Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
4
votes
3
replies
660
views
where to find GRCh38 for 1000 Genomes
VCF GRCh38 1000Genomes
updated 17 months ago by 10k • written 18 months ago by ▴ 100
9
votes
6
replies
1.9k
views
where can i find the GRCh38 genetic map for IMPUTE2
map GRCh38 IMPUTE2
18 months ago by raalsuwaidi ▴ 100
2
votes
0
replies
1.9k
views
Answer: Answer: where can i find the GRCh38 genetic map for IMPUTE2
18 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.9k
views
Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
18 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
18 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
660
views
Comment: Comment: where to find GRCh38 for 1000 Genomes
18 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
226
views
How does IMPUTE2 calculate concordance
concordance IMPUTE2
19 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
548
views
Comment: Comment: How to perform imputation analysis between masked SNPs and ground truth
19 months ago by raalsuwaidi ▴ 100
2
votes
3
replies
548
views
How to perform imputation analysis between masked SNPs and ground truth
GWAS SNPs IMPUTE2
updated 19 months ago by 3.7k • written 19 months ago by ▴ 100
0
votes
0
replies
284
views
How to calculate r2 for IMPUTE2
r2 IMPUTE2
19 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
906
views
Comment: Comment: how to remove positions in VCF based on rsID
19 months ago by raalsuwaidi ▴ 100
6
votes
6
replies
906
views
how to remove positions in VCF based on rsID
vcf plink bcftools
updated 3 months ago by 40k • written 19 months ago by ▴ 100
0
votes
1
reply
906
views
Comment: Comment: how to remove positions in VCF based on rsID
19 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
264
views
How does IMPUTE2 assigns snp_id
SNP VCF IMPUTE2 bcftools PLINK
19 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
840
views
Comment: Comment: help with CrossMap
19 months ago by raalsuwaidi ▴ 100
3
votes
1
reply
1.1k
views
how to convert from hap/legend to VCF
-merge_ref_panels_output_ref VCF IMPUTE2
updated 19 months ago by 10k • written 19 months ago by ▴ 100
0
votes
0
replies
887
views
Comment: Comment: how to loop and select values from a python dataframe
20 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
887
views
Comment: Comment: how to loop and select values from a python dataframe
20 months ago by raalsuwaidi ▴ 100
1
vote
4
replies
887
views
how to loop and select values from a python dataframe
dataframe python
20 months ago by raalsuwaidi ▴ 100
2
votes
1
reply
663
views
understand and how to plot the PLINK mdist file
plink mdist plot
20 months ago by raalsuwaidi ▴ 100
2
votes
0
replies
663
views
Answer: Answer: understand and how to plot the PLINK mdist file
20 months ago by raalsuwaidi ▴ 100
0
votes
2
replies
840
views
help with CrossMap
VCF hg38 hg19 CrossMap
19 months ago by raalsuwaidi ▴ 100
6
votes
2
replies
2.0k
views
struggling in using bcftools to set variants to missing
missing2ref setGT bcftools vcf
updated 7 months ago by • 0 • written 22 months ago by ▴ 100
0
votes
0
replies
332
views
map files
genome impute2 map
22 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
340
views
IMPUTE2 -merge_ref_panels output
IMPUTE2
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
410
views
Distance matrix PCA
HAP PCA distance
23 months ago by raalsuwaidi ▴ 100
3
votes
0
replies
1.7k
views
Answer: Answer: IMPUTE2 -merge_ref_panels
2.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
2.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
2.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
2.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
2.0 years ago by raalsuwaidi ▴ 100
3
votes
9
replies
1.7k
views
IMPUTE2 -merge_ref_panels
IMPUTE2 -merge_ref_panels
updated 2.0 years ago by 86k • written 2.0 years ago by ▴ 100
0
votes
0
replies
1.4k
views
Comment: Comment: Mask a SNP before imputation
2.0 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
581
views
Comment: Comment: custom reference panel
2.0 years ago by raalsuwaidi ▴ 100
1
vote
0
replies
492
views
Comment: Comment: What is the best way to generate snp list from reference genomes from NCBI?
2.0 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
581
views
custom reference panel
sample impute GWAS
2.0 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.7k
views
Comment: Comment: color coded PCA plot in R for a combined set
2.2 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: color coded PCA plot in R for a combined set
2.2 years ago by raalsuwaidi ▴ 100
3
votes
4
replies
1.7k
views
color coded PCA plot in R for a combined set
plink pca plot
2.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: PCA for combined set
2.2 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: PCA for combined set
2.2 years ago by raalsuwaidi ▴ 100
3
votes
4
replies
1.1k
views
PCA for combined set
plink bcftools vcf PCA
2.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
526
views
Comment: Comment: Combining two vcf files
2.2 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
526
views
Combining two vcf files
Vcf GWAS
2.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
524
views
Combining data sets for PCA
Plink 1000genome PCA genotype
2.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: setting genotypes to missing
2.2 years ago by raalsuwaidi ▴ 100
4
votes
4
replies
1.1k
views
setting genotypes to missing
genotype vcf impute
2.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: setting genotypes to missing
2.3 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
848
views
Comment: Comment: missing REF and ALT in vcf
2.3 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
848
views
missing REF and ALT in vcf
REF SNP VCF ALT
2.3 years ago by raalsuwaidi ▴ 100
63 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6