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Answer: Answer: Trimming tool
18 months ago by ntsopoul ▴ 60
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1.2k
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Comment: Comment: ggrepel function: geom_text_repel()
updated 18 months ago by 45k • written 18 months ago by ▴ 60
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485
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select set of intervals that cover a genomic region
GRanges bed
18 months ago by ntsopoul ▴ 60
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2.6k
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Comment: Comment: Overlapping Ranges within Granges object
18 months ago by ntsopoul ▴ 60
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1
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2.6k
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Comment: Comment: Overlapping Ranges within Granges object
18 months ago by ntsopoul ▴ 60
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2.6k
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Comment: Comment: Overlapping Ranges within Granges object
18 months ago by ntsopoul ▴ 60
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0
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1.2k
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Answer: Answer: RNAseq RNA content
18 months ago by ntsopoul ▴ 60
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1
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2.6k
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Comment: Comment: Overlapping Ranges within Granges object
18 months ago by ntsopoul ▴ 60
1
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8
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2.6k
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Overlapping Ranges within Granges object
Genomicranges IRanges GRanges
updated 18 months ago by 36k • written 18 months ago by ▴ 60
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1.6k
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
19 months ago by ntsopoul ▴ 60
3
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7
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1.6k
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Integration of transcriptomics and proteomics: difficult matching names
rna-seq tmt nomenclature proteomics
19 months ago by ntsopoul ▴ 60
0
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0
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1.6k
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Answer: Answer: Integration of transcriptomics and proteomics: difficult matching names
19 months ago by ntsopoul ▴ 60
0
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1
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1.6k
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matchin names
19 months ago by ntsopoul ▴ 60
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0
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2.5k
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Comment: Comment: fragments file generation via Sinto from CellRanger output
2.1 years ago by ntsopoul ▴ 60
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9
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2.5k
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fragments file generation via Sinto from CellRanger output
scATAC alignment scRNA Sinto 10x
2.1 years ago by ntsopoul ▴ 60
0
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1
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2.5k
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Comment: Comment: fragments file generation via Sinto from CellRanger output
2.1 years ago by ntsopoul ▴ 60
0
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1
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2.5k
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Comment: Comment: fragments file generation via Sinto from CellRanger output
2.1 years ago by ntsopoul ▴ 60
0
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2
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2.5k
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Comment: Comment: fragments file generation via Sinto from CellRanger output
2.1 years ago by ntsopoul ▴ 60
0
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1
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2.5k
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Comment: Comment: fragments file generation via Sinto from CellRanger output
2.1 years ago by ntsopoul ▴ 60
0
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1
reply
1.1k
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How to import bigwig files into igvR
bigwig igvr
updated 2.1 years ago by ★ 1.9k • written 2.1 years ago by ▴ 60
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0
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3.5k
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Comment: Comment: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
2.7 years ago by ntsopoul ▴ 60
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0
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2.3k
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Comment: Comment: What is exactly meant by "GENCODE TSS"?
2.7 years ago by ntsopoul ▴ 60
4
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3
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3.5k
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Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq data
splicing RNA-seq
2.7 years ago by ntsopoul ▴ 60
0
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1
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2.1k
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Answer: Answer: My fastq files(paired end) have different read number
2.7 years ago by ntsopoul ▴ 60
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1
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2.9k
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Answer: Answer: Can I use abundance from Tximport to compare the expression level of transcript
2.7 years ago by ntsopoul ▴ 60
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1
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3.0k
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Comment: Comment: Fastqc report analysis
2.7 years ago by ntsopoul ▴ 60
2
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1
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3.0k
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Answer: Answer: Fastqc report analysis
2.7 years ago by ntsopoul ▴ 60
3
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5
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3.3k
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10x scRNAseq from just R1 and R2
scRNA alignment 10x
updated 2.9 years ago by ★ 4.7k • written 2.9 years ago by ▴ 60
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1
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3.3k
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Comment: Comment: 10x scRNAseq from just R1 and R2
2.9 years ago by ntsopoul ▴ 60
1
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1
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806
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comparison of conditions scRNA-seq
scRNA-seq seurat 10x
updated 3.0 years ago by 4.2k • written 3.0 years ago by ▴ 60
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2
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1.5k
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Comment: Comment: Gene Tracks from 10x Data
3.0 years ago by ntsopoul ▴ 60
1
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4
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1.5k
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Gene Tracks from 10x Data
scRNA-seq polyadenylation 10x
updated 3.0 years ago by 5.2k • written 3.0 years ago by ▴ 60
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1
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2.1k
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Comment: Comment: scRNA-seq from SRA
3.0 years ago by ntsopoul ▴ 60
0
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1
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2.1k
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Comment: Comment: scRNA-seq from SRA
3.0 years ago by ntsopoul ▴ 60
1
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5
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2.1k
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scRNA-seq from SRA
sra-tools cellranger scRNA-seq fastq-dump SRA
updated 2.4 years ago by 45k • written 3.0 years ago by ▴ 60
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1
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2.8k
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Comment: Comment: Low alignment score for microRNA
3.1 years ago by ntsopoul ▴ 60
1
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0
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2.8k
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Comment: Comment: Low alignment score for microRNA
3.1 years ago by ntsopoul ▴ 60
0
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1
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2.8k
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Comment: Comment: Low alignment score for microRNA
3.1 years ago by ntsopoul ▴ 60
0
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1
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2.8k
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Comment: Comment: Low alignment score for microRNA
3.1 years ago by ntsopoul ▴ 60
4
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8
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2.8k
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Low alignment score for microRNA
small-RNA microRNA bowtie alignment
updated 3.1 years ago by 154k • written 3.1 years ago by ▴ 60
0
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0
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913
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Adapter sequences left after trimming small RNA seq data with TrimGalore!
Trim small miRNA RNA Galore
3.2 years ago by ntsopoul ▴ 60
0
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0
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830
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Comment: C: SNPs in 3UTR
5.5 years ago by ntsopoul ▴ 60
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0
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1.4k
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Comment: C: Do I have adapters in my reads?
5.5 years ago by ntsopoul ▴ 60
0
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2
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830
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SNPs in 3UTR
SNP RNA-Seq sequencing
5.5 years ago by ntsopoul ▴ 60
1
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2
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1.4k
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Do I have adapters in my reads?
rna-seq alignment Assembly
updated 5.5 years ago by 12k • written 5.5 years ago by ▴ 60
0
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1
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2.2k
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Comment: C: RNA-seq of 3'-UTRs
5.5 years ago by ntsopoul ▴ 60
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1
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2.2k
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Comment: A: RNA-seq of 3'-UTRs
5.5 years ago by ntsopoul ▴ 60
0
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7
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2.2k
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RNA-seq of 3'-UTRs
RNA-Seq Assembly rna-seq alignment
5.5 years ago by ntsopoul ▴ 60
0
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0
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2.2k
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Comment: A: RNA-seq of 3'-UTRs
5.5 years ago by ntsopoul ▴ 60
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