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questions
1
vote
1
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123
views
The total expressed genes in RNA-Seq data
RNA-SEQ
updated 17 hours ago by
ATpoint
82k • written 22 hours ago by
Pegasus
▴ 100
0
votes
2
replies
422
views
Alternative tool or website of PathogenFinder
WGS
bacteria
updated 10 weeks ago by
GenoMax
142k • written 3 months ago by
Pegasus
▴ 100
2
votes
3
replies
617
views
Contigs number vs NNN gap % in WGS
WGS
updated 11 weeks ago by
GenoMax
142k • written 3 months ago by
Pegasus
▴ 100
6
votes
7
replies
663
views
Finding EntreZ IDs for refseq IDs
RNA-SEQ
3 months ago by
Pegasus
▴ 100
1
vote
2
replies
730
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
11 months ago by
Pegasus
▴ 100
2
votes
6
replies
793
views
Find data-based Gene_IDs for unknown gene_IDs in gtf.file
RNA-SEQ
annotation
GO-term
11 months ago by
Pegasus
▴ 100
2
votes
2
replies
715
views
Gene Ontology / Hypothetical proteins
RNA-SEQ
terms
GO
12 months ago by
Pegasus
▴ 100
1
vote
5
replies
1.2k
views
GFF/GTF file error / featureCounts
RNA-SEQ
updated 13 months ago by
barslmn
★ 2.1k • written 13 months ago by
Pegasus
▴ 100
0
votes
0
replies
416
views
Link products to their genes
RNA-SEQ
GO
edgeR
13 months ago by
Pegasus
▴ 100
1
vote
3
replies
831
views
How to extract/find the actual names of the gene_IDs if they are not fully presented in gtf.file, and link them to the Count.matrix
featureCounts
gtf
RNA-Seq
updated 14 months ago by
GenoMax
142k • written 14 months ago by
Pegasus
▴ 100
2
votes
4
replies
1.0k
views
FeatureCounts >edgeR > GO
RNA-SEQ
13 months ago by
Pegasus
▴ 100
1
vote
2
replies
732
views
RNA-seq data analysis (prokaryotes) featurecounts with
featureCounts
RNA-Seq
14 months ago by
Pegasus
▴ 100
5
votes
6
replies
1.1k
views
Trimmomatic generated two (reverse-forward) paired-files with different number of reads
Trimmomatic
RNA-Seq
14 months ago by
Pegasus
▴ 100
4
votes
3
replies
978
views
R removes 1st column (gene-id) from featureCounts count.txt table
featureCounts
RNA-Seq
R
14 months ago by
Pegasus
▴ 100
4
votes
9
replies
1.9k
views
PROKKA.gff file is not compatible with featureCounts
featureCounts
RNA-seq
15 months ago by
Pegasus
▴ 100
0
votes
0
replies
408
views
why count_matrix.csv generated by "prepDE.py3" showed unidentified IDs
Stringtie
RNA-seq
15 months ago by
Pegasus
▴ 100
2
votes
11
replies
2.7k
views
bedGraph to bigwig
IGV
RNA-seq
updated 15 months ago by
Ram
43k • written 15 months ago by
Pegasus
▴ 100
1
vote
4
replies
1.5k
views
Stringtie issue. "Error: no valid ID found for GFF record"
Stringtie
RNA-seq
updated 16 months ago by
GenoMax
142k • written 16 months ago by
Pegasus
▴ 100
2
votes
2
replies
722
views
Hisat2
Hisat2
RNA-seq
16 months ago by
Pegasus
▴ 100
5
votes
2
replies
750
views
HISAT2_linux
RNA-SEQ
18 months ago by
Pegasus
▴ 100
0
votes
0
replies
335
views
biosynthesis gene clusters comparison
comparison
genome
21 months ago by
Pegasus
▴ 100
5
votes
6
replies
3.5k
views
Trimmomatic/ linux system
Illumina
sequencing
RNA-Seq
Trimmomatic
updated 16 months ago by
GenoMax
142k • written 2.1 years ago by
Pegasus
▴ 100
1
vote
5
replies
2.6k
views
NCBI PGAP yami file
genome
updated 20 months ago by
ahmer
• 0 • written 3.8 years ago by
Pegasus
▴ 100
0
votes
0
replies
461
views
vecscreen results of bacterial scaffolds
genome
3.8 years ago by
Pegasus
▴ 100
2
votes
5
replies
1.1k
views
Missing pseudogenes in annotation report
Assembly
3.8 years ago by
Pegasus
▴ 100
3
votes
5
replies
977
views
NCBI Contamination Screen
next-gen
genome
3.9 years ago by
Pegasus
▴ 100
6
votes
10
replies
1.2k
views
QC prior to bacterial genome assembly
sequencing
genome
next-gen
3.9 years ago by
Pegasus
▴ 100
16
votes
16
replies
5.6k
views
how to run a tool (package) installed into anaconda environment ..using mac terminal
genome
updated 11 months ago by
Ram
43k • written 4.0 years ago by
Pegasus
▴ 100
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