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1
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16
replies
6.9k
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PRS in UK Biobank - no covariate file and no phenotype file
UK Biobank PRS
4.1 years ago by Jalil Sharif ▴ 80
1
vote
0
replies
17k
views
Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
17 months ago by Jalil Sharif ▴ 80
1
vote
3
replies
986
views
differential gene expression gene names/id vs transcript id
volcano-plot
updated 2.3 years ago by 89k • written 2.3 years ago by ▴ 80
3
votes
3
replies
1.1k
views
DESeq2: "model matrix is not full rank"
deseq2
updated 2.3 years ago by 10k • written 2.3 years ago by ▴ 80
0
votes
0
replies
516
views
extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
2.4 years ago by Jalil Sharif ▴ 80
0
votes
9
replies
2.6k
views
Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated 2.4 years ago by ★ 1.7k • written 2.4 years ago by ▴ 80
0
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0
replies
2.6k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
2.4 years ago by Jalil Sharif ▴ 80
0
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1
reply
2.6k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
2.4 years ago by Jalil Sharif ▴ 80
0
votes
2
replies
2.6k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
2.4 years ago by Jalil Sharif ▴ 80
0
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0
replies
2.4k
views
Comment: Comment: samtools and Rsamtools in r
2.4 years ago by Jalil Sharif ▴ 80
0
votes
6
replies
2.4k
views
samtools and Rsamtools in r
samtools
updated 2.3 years ago by 45k • written 2.4 years ago by ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: samtools and Rsamtools in r
2.4 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
2.4k
views
Comment: Comment: samtools and Rsamtools in r
2.4 years ago by Jalil Sharif ▴ 80
6
votes
7
replies
2.0k
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 2.4 years ago by 103k • written 2.4 years ago by ▴ 80
2
votes
0
replies
2.0k
views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
2.4 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
2.0k
views
Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
2.4 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.7k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
2.5 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
1.7k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
2.5 years ago by Jalil Sharif ▴ 80
2
votes
4
replies
1.7k
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
2.5 years ago by Jalil Sharif ▴ 80
6
votes
12
replies
4.6k
views
6 follow
gtf2bed not converting to bed
bed gtf
updated 2.6 years ago by 9.3k • written 2.6 years ago by ▴ 80
0
votes
0
replies
4.6k
views
Comment: Comment: gtf2bed not converting to bed
2.6 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
2.6 years ago by Jalil Sharif ▴ 80
3
votes
4
replies
1.5k
views
Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
2.6 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
1.5k
views
short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment read short
updated 2.7 years ago by 8.0k • written 2.7 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: differential gene expression pipelines rnaflow vs rnaseq
2.7 years ago by Jalil Sharif ▴ 80
0
votes
2
replies
1.1k
views
differential gene expression pipelines rnaflow vs rnaseq
differential expression gene
2.7 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
564
views
bowtie2 code to bwa-mem2
bwa-mem2 bowtie2
2.8 years ago by Jalil Sharif ▴ 80
1
vote
1
reply
2.2k
views
Extracting Beta, SE and P-Value from GLM model
beta glm r
updated 3.2 years ago by 5.1k • written 3.2 years ago by ▴ 80
0
votes
1
reply
707
views
Annotation SNP's with their Gene names
Gene annotations
updated 3.4 years ago by 2.9k • written 3.4 years ago by ▴ 80
0
votes
0
replies
788
views
PLINK - PRS/GRS .fam file has fewer tokens
plink fam PRS
updated 2.6 years ago by 45k • written 3.5 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Comment: Comment: How to find top-hit SNP from gwas.
3.6 years ago by Jalil Sharif ▴ 80
1
vote
3
replies
1.3k
views
How to find top-hit SNP from gwas.
SNP GWAS tophits
3.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
3.7k
views
Comment: Comment: Clumping error Plink
3.7 years ago by Jalil Sharif ▴ 80
0
votes
3
replies
3.7k
views
Clumping error Plink
clumping plink biobank uk
updated 3.7 years ago by ★ 4.8k • written 3.7 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
3.7 years ago by Jalil Sharif ▴ 80
0
votes
2
replies
1.5k
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field Diagnosis UK Biobank
3.7 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.7k
views
Comment: Comment: Averaging across multiple columns
3.9 years ago by Jalil Sharif ▴ 80
2
votes
1
reply
1.7k
views
Answer: Answer: Averaging across multiple columns
3.9 years ago by Jalil Sharif ▴ 80
4
votes
5
replies
1.7k
views
Averaging across multiple columns
awk bash column
3.9 years ago by Jalil Sharif ▴ 80
3
votes
0
replies
11k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.9 years ago by Jalil Sharif ▴ 80
4
votes
6
replies
11k
views
merging multiple .bed /.bgen files uk biobank using plink
plink uk biobank merge-list
3.9 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
11k
views
Answer: Answer: merging multiple .bed /.bgen files uk biobank using plink
3.9 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
11k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.9 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.0 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.0 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.0 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.0 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.1 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
4.1 years ago by Jalil Sharif ▴ 80
53 results • Page 1 of 2
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