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1
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0
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14k
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Answer:
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
17 hours ago by
Jalil Sharif
▴ 80
1
vote
3
replies
544
views
differential gene expression gene names/id vs transcript id
volcano-plot
updated 9 months ago by
ATpoint
82k • written 9 months ago by
Jalil Sharif
▴ 80
3
votes
3
replies
526
views
DESeq2: "model matrix is not full rank"
deseq2
updated 9 months ago by
Asaf
10k • written 9 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
313
views
extracting gencode 3utr and 5utr as part of R pipeline
5utr
3utr
11 months ago by
Jalil Sharif
▴ 80
0
votes
9
replies
1.4k
views
Intersecting transcriptome bam file with GTF file
findoverlaps
bedtools
transcriptome
updated 11 months ago by
rfran010
▴ 900 • written 11 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
1.4k
views
Comment:
Comment: Intersecting transcriptome bam file with GTF file
11 months ago by
Jalil Sharif
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: Intersecting transcriptome bam file with GTF file
11 months ago by
Jalil Sharif
▴ 80
0
votes
2
replies
1.4k
views
Comment:
Comment: Intersecting transcriptome bam file with GTF file
11 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
1.1k
views
Comment:
Comment: samtools and Rsamtools in r
11 months ago by
Jalil Sharif
▴ 80
0
votes
6
replies
1.1k
views
samtools and Rsamtools in r
samtools
updated 10 months ago by
Ram
43k • written 11 months ago by
Jalil Sharif
▴ 80
0
votes
1
reply
1.1k
views
Comment:
Comment: samtools and Rsamtools in r
11 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
1.1k
views
Comment:
Comment: samtools and Rsamtools in r
11 months ago by
Jalil Sharif
▴ 80
6
votes
7
replies
956
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 11 months ago by
Istvan Albert
100k • written 11 months ago by
Jalil Sharif
▴ 80
2
votes
0
replies
956
views
Answer:
Answer: extracting data from single end aligned bam file - chromosome, strand, start and
11 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
956
views
Comment:
Comment: extracting data from single end aligned bam file - chromosome, strand, start and
11 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
828
views
Comment:
Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
13 months ago by
Jalil Sharif
▴ 80
0
votes
1
reply
828
views
Comment:
Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
13 months ago by
Jalil Sharif
▴ 80
2
votes
4
replies
828
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
13 months ago by
Jalil Sharif
▴ 80
6
votes
12
replies
2.1k
views
6 follow
gtf2bed not converting to bed
bed
gtf
updated 13 months ago by
Juke34
8.5k • written 13 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
2.1k
views
Comment:
Comment: gtf2bed not converting to bed
13 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
758
views
Comment:
Comment: Ensembl equivalent of refseq transcript fasta
14 months ago by
Jalil Sharif
▴ 80
3
votes
4
replies
758
views
Ensembl equivalent of refseq transcript fasta
ensembl
transcriptome
refseq
14 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
758
views
Comment:
Comment: Ensembl equivalent of refseq transcript fasta
14 months ago by
Jalil Sharif
▴ 80
0
votes
1
reply
876
views
short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment
read
short
updated 15 months ago by
colindaven
6.4k • written 15 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
722
views
Comment:
Comment: differential gene expression pipelines rnaflow vs rnaseq
15 months ago by
Jalil Sharif
▴ 80
0
votes
2
replies
722
views
differential gene expression pipelines rnaflow vs rnaseq
differential
expression
gene
15 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
399
views
bowtie2 code to bwa-mem2
bwa-mem2
bowtie2
15 months ago by
Jalil Sharif
▴ 80
1
vote
1
reply
1.3k
views
Extracting Beta, SE and P-Value from GLM model
beta
glm
r
updated 21 months ago by
LChart
3.9k • written 21 months ago by
Jalil Sharif
▴ 80
0
votes
1
reply
422
views
Annotation SNP's with their Gene names
Gene
annotations
updated 23 months ago by
4galaxy77
2.8k • written 23 months ago by
Jalil Sharif
▴ 80
0
votes
0
replies
404
views
PLINK - PRS/GRS .fam file has fewer tokens
plink
fam
PRS
updated 13 months ago by
Ram
43k • written 2.1 years ago by
Jalil Sharif
▴ 80
0
votes
0
replies
815
views
Comment:
Comment: How to find top-hit SNP from gwas.
2.2 years ago by
Jalil Sharif
▴ 80
1
vote
3
replies
815
views
How to find top-hit SNP from gwas.
SNP
GWAS
tophits
2.2 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
2.5k
views
Comment:
Comment: Clumping error Plink
2.3 years ago by
Jalil Sharif
▴ 80
0
votes
3
replies
2.5k
views
Clumping error Plink
clumping
plink
biobank
uk
updated 2.3 years ago by
Sam
★ 4.7k • written 2.3 years ago by
Jalil Sharif
▴ 80
0
votes
0
replies
951
views
Comment:
Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
2.3 years ago by
Jalil Sharif
▴ 80
0
votes
2
replies
951
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field
Diagnosis
UK
Biobank
2.3 years ago by
Jalil Sharif
▴ 80
0
votes
0
replies
1.2k
views
Comment:
Comment: Averaging across multiple columns
2.4 years ago by
Jalil Sharif
▴ 80
2
votes
1
reply
1.2k
views
Answer:
Answer: Averaging across multiple columns
2.4 years ago by
Jalil Sharif
▴ 80
4
votes
5
replies
1.2k
views
Averaging across multiple columns
awk
bash
column
2.4 years ago by
Jalil Sharif
▴ 80
3
votes
0
replies
6.5k
views
Comment:
Comment: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by
Jalil Sharif
▴ 80
4
votes
6
replies
6.5k
views
merging multiple .bed /.bgen files uk biobank using plink
plink
uk
biobank
merge-list
2.5 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
6.5k
views
Answer:
Answer: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
6.5k
views
Comment:
Comment: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by
Jalil Sharif
▴ 80
1
vote
15
replies
4.1k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK
Biobank
PRS
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
0
replies
4.1k
views
Answer:
Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
4.1k
views
Comment:
Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
4.1k
views
Comment:
Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
4.1k
views
Answer:
Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
4.1k
views
Comment:
Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
0
votes
1
reply
4.1k
views
Comment:
Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by
Jalil Sharif
▴ 80
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