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0
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14k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
4 weeks ago by Jalil Sharif ▴ 80
1
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3
replies
574
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differential gene expression gene names/id vs transcript id
volcano-plot
updated 10 months ago by 83k • written 10 months ago by ▴ 80
3
votes
3
replies
557
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DESeq2: "model matrix is not full rank"
deseq2
updated 10 months ago by 10k • written 10 months ago by ▴ 80
0
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0
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323
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extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
12 months ago by Jalil Sharif ▴ 80
0
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9
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1.5k
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Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated 12 months ago by ▴ 920 • written 12 months ago by ▴ 80
0
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0
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1.5k
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Comment: Comment: Intersecting transcriptome bam file with GTF file
12 months ago by Jalil Sharif ▴ 80
0
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1
reply
1.5k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
12 months ago by Jalil Sharif ▴ 80
0
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2
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1.5k
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Comment: Comment: Intersecting transcriptome bam file with GTF file
12 months ago by Jalil Sharif ▴ 80
0
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0
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1.2k
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Comment: Comment: samtools and Rsamtools in r
12 months ago by Jalil Sharif ▴ 80
0
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6
replies
1.2k
views
samtools and Rsamtools in r
samtools
updated 11 months ago by 44k • written 12 months ago by ▴ 80
0
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1
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1.2k
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Comment: Comment: samtools and Rsamtools in r
12 months ago by Jalil Sharif ▴ 80
0
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0
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1.2k
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Comment: Comment: samtools and Rsamtools in r
12 months ago by Jalil Sharif ▴ 80
6
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7
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1.0k
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 12 months ago by 100k • written 12 months ago by ▴ 80
2
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0
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1.0k
views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
12 months ago by Jalil Sharif ▴ 80
0
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0
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1.0k
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Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
12 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
897
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Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
14 months ago by Jalil Sharif ▴ 80
0
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1
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897
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Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
14 months ago by Jalil Sharif ▴ 80
2
votes
4
replies
897
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
14 months ago by Jalil Sharif ▴ 80
6
votes
12
replies
2.2k
views
6 follow
gtf2bed not converting to bed
bed gtf
updated 14 months ago by 8.6k • written 14 months ago by ▴ 80
0
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0
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2.2k
views
Comment: Comment: gtf2bed not converting to bed
14 months ago by Jalil Sharif ▴ 80
0
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0
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798
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
15 months ago by Jalil Sharif ▴ 80
3
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4
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798
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Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
15 months ago by Jalil Sharif ▴ 80
0
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0
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798
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Comment: Comment: Ensembl equivalent of refseq transcript fasta
15 months ago by Jalil Sharif ▴ 80
0
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1
reply
926
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short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment read short
updated 16 months ago by 6.4k • written 16 months ago by ▴ 80
0
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0
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751
views
Comment: Comment: differential gene expression pipelines rnaflow vs rnaseq
16 months ago by Jalil Sharif ▴ 80
0
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2
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751
views
differential gene expression pipelines rnaflow vs rnaseq
differential expression gene
16 months ago by Jalil Sharif ▴ 80
0
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0
replies
415
views
bowtie2 code to bwa-mem2
bwa-mem2 bowtie2
16 months ago by Jalil Sharif ▴ 80
1
vote
1
reply
1.4k
views
Extracting Beta, SE and P-Value from GLM model
beta glm r
updated 22 months ago by 3.9k • written 22 months ago by ▴ 80
0
votes
1
reply
437
views
Annotation SNP's with their Gene names
Gene annotations
updated 2.0 years ago by 2.8k • written 2.0 years ago by ▴ 80
0
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0
replies
424
views
PLINK - PRS/GRS .fam file has fewer tokens
plink fam PRS
updated 14 months ago by 44k • written 2.2 years ago by ▴ 80
0
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0
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848
views
Comment: Comment: How to find top-hit SNP from gwas.
2.2 years ago by Jalil Sharif ▴ 80
1
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3
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848
views
How to find top-hit SNP from gwas.
SNP GWAS tophits
2.2 years ago by Jalil Sharif ▴ 80
0
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1
reply
2.6k
views
Comment: Comment: Clumping error Plink
2.4 years ago by Jalil Sharif ▴ 80
0
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3
replies
2.6k
views
Clumping error Plink
clumping plink biobank uk
updated 2.4 years ago by ★ 4.7k • written 2.4 years ago by ▴ 80
0
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0
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982
views
Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
2.4 years ago by Jalil Sharif ▴ 80
0
votes
2
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982
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field Diagnosis UK Biobank
2.4 years ago by Jalil Sharif ▴ 80
0
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0
replies
1.2k
views
Comment: Comment: Averaging across multiple columns
2.5 years ago by Jalil Sharif ▴ 80
2
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1
reply
1.2k
views
Answer: Answer: Averaging across multiple columns
2.5 years ago by Jalil Sharif ▴ 80
4
votes
5
replies
1.2k
views
Averaging across multiple columns
awk bash column
2.5 years ago by Jalil Sharif ▴ 80
3
votes
0
replies
6.9k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
2.5 years ago by Jalil Sharif ▴ 80
4
votes
6
replies
6.9k
views
merging multiple .bed /.bgen files uk biobank using plink
plink uk biobank merge-list
2.5 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Answer: Answer: merging multiple .bed /.bgen files uk biobank using plink
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
6.9k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
2.6 years ago by Jalil Sharif ▴ 80
1
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15
replies
4.2k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK Biobank PRS
2.6 years ago by Jalil Sharif ▴ 80
0
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0
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4.2k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.2k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.7 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.2k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.7 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.2k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.7 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.2k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.7 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.2k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.7 years ago by Jalil Sharif ▴ 80
53 results • Page 1 of 2
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