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questions
0
votes
0
replies
255
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SeqSQC can be used for sample QC of Whole Genome Sequencing Data
SeqSQC
WGS
6 months ago by
ttom
▴ 220
3
votes
3
replies
924
views
How to choose LiftOver chain file
hg38tohg19
picard
LiftOver
updated 6 months ago by
Giulio Genovese
▴ 390 • written 6 months ago by
ttom
▴ 220
0
votes
3
replies
777
views
bcftoold guess ploidy
bcftools
guess-ploidy
updated 8 months ago by
bk11
★ 2.4k • written 8 months ago by
ttom
▴ 220
0
votes
1
reply
620
views
Annovar Error
annovar
10 months ago by
ttom
▴ 220
0
votes
1
reply
459
views
SnpEff output VCF in `.gz` format
snpeff
updated 10 months ago by
Pierre Lindenbaum
161k • written 10 months ago by
ttom
▴ 220
1
vote
2
replies
649
views
Snpeff run with downloaded genome database
snpeff
updated 10 months ago by
estpallag
▴ 10 • written 10 months ago by
ttom
▴ 220
1
vote
4
replies
927
views
GATK CombineGVCFs with genotypes './.'
GATK
CombineGVCFs
22 months ago by
ttom
▴ 220
1
vote
3
replies
1.4k
views
How to subset a GVCF using GATK SelectVariants
GATK
SelectVariants
22 months ago by
ttom
▴ 220
3
votes
3
replies
2.1k
views
Workflow Error - "list indices must be integers, not str"
CWL
5.8 years ago by
ttom
▴ 220
3
votes
2
replies
2.5k
views
Input type array and Output type file, possible in CWL ?
CWL
5.8 years ago by
ttom
▴ 220
3
votes
6
replies
4.8k
views
CWL passing secondary files in a workflow
CWL
updated 5.8 years ago by
biokcb
▴ 170 • written 5.8 years ago by
ttom
▴ 220
6
votes
9
replies
2.1k
views
String editing for output file name
CWL
5.9 years ago by
ttom
▴ 220
2
votes
9
replies
2.2k
views
Capture Output files using glob
CWL
updated 5.9 years ago by
biokcb
▴ 170 • written 5.9 years ago by
ttom
▴ 220
5
votes
5
replies
1.8k
views
String concatenation for output
CWL
updated 5.9 years ago by
drkennetz
▴ 560 • written 5.9 years ago by
ttom
▴ 220
1
vote
1
reply
3.2k
views
Escape character usage in YML file - running tool in CWL
CWL
YML
YAML
5.9 years ago by
ttom
▴ 220
1
vote
2
replies
3.3k
views
Problems connecting to NCBI using NCBI edirect
ncbi
edirect
esearch
6.0 years ago by
ttom
▴ 220
0
votes
1
reply
2.3k
views
cramtools Java NoClassDefFoundError
cram
cramtools
7.9 years ago by
ttom
▴ 220
0
votes
1
reply
2.5k
views
Understanding SomaticSniper output
somaticsniper
8.1 years ago by
ttom
▴ 220
5
votes
2
replies
5.5k
views
Tool or Script to convert MAF file to VCF ?
MAF
VCF
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
ttom
▴ 220
14
votes
5
replies
9.9k
views
Split a multisample bam using RG tag information
samtools
bam
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
ttom
▴ 220
1
vote
4
replies
8.0k
views
GATK-Depth of Coverage - Issue with per gene coverage
GATK
DepthOfCoverage
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
ttom
▴ 220
6
votes
10
replies
5.6k
views
Bwa Run With Fastq File With Different Read Length
bwa
fastq
updated 10.3 years ago by
Devon Ryan
104k • written 10.3 years ago by
ttom
▴ 220
6
votes
3
replies
10k
views
Vcftools --Geno And --Hwe Filter Options -No Output File Created
vcftools
updated 10.4 years ago by
Biostar
20 • written 11.0 years ago by
ttom
▴ 220
6
votes
16
replies
14k
views
R : File Do Not Exists Error. Isilon File Path Not Recognized In R
r
updated 10.4 years ago by
Biostar
20 • written 10.6 years ago by
ttom
▴ 220
6
votes
5
replies
6.6k
views
Why Does Vcftools Vcf-Annotate Produce An Empty File
vcftools
11.1 years ago by
ttom
▴ 220
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