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0
votes
0
replies
490
views
How to plot the gap distribution of contigs wrt to reference genome
minia
distribution
minimap2
fasta
plot
2.6 years ago by
Ashi
▴ 20
2
votes
1
reply
574
views
How to create a new file containing contigs of a certain length from another contigs file
fasta
minia
updated 13 months ago by
Ram
43k • written 2.6 years ago by
Ashi
▴ 20
0
votes
1
reply
650
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 12 days ago by
Ram
43k • written 2.7 years ago by
Ashi
▴ 20
0
votes
0
replies
882
views
Comment:
Comment: Error while installing Minia on Linux
2.8 years ago by
Ashi
▴ 20
4
votes
3
replies
882
views
Error while installing Minia on Linux
minia
install
error
linux
2.8 years ago by
Ashi
▴ 20
3
votes
2
replies
783
views
How to know the positions of contigs in a reference genome
mapping
positions
alignment
reference
genome
contigs
updated 2.8 years ago by
GenoMax
141k • written 2.8 years ago by
Ashi
▴ 20
0
votes
0
replies
22k
views
Comment:
C: Tool for calculating sequence statistic values (e.g. N50) for multiple bins
3.1 years ago by
Ashi
▴ 20
0
votes
1
reply
2.5k
views
Comment:
C: How to count frequency of kmers for different values of k from fasta file
3.2 years ago by
Ashi
▴ 20
0
votes
1
reply
2.5k
views
Comment:
C: How to count frequency of kmers for different values of k from fasta file
3.2 years ago by
Ashi
▴ 20
0
votes
1
reply
2.5k
views
Comment:
C: How to count frequency of kmers for different values of k from fasta file
updated 3.2 years ago by
GenoMax
141k • written 3.2 years ago by
Ashi
▴ 20
0
votes
0
replies
2.5k
views
Comment:
C: How to count frequency of kmers for different values of k from fasta file
3.2 years ago by
Ashi
▴ 20
0
votes
1
reply
2.5k
views
Comment:
C: How to count frequency of kmers for different values of k from fasta file
3.2 years ago by
Ashi
▴ 20
0
votes
12
replies
2.5k
views
How to count frequency of kmers for different values of k from fasta file
fasta
kmers
count
frequency
genome
updated 3.2 years ago by
GenoMax
141k • written 3.2 years ago by
Ashi
▴ 20
0
votes
0
replies
1.2k
views
Comment:
C: How does long reads help in the repeated regions of the genome
3.6 years ago by
Ashi
▴ 20
0
votes
0
replies
1.2k
views
Comment:
C: How does long reads help in the repeated regions of the genome
3.6 years ago by
Ashi
▴ 20
6
votes
4
replies
1.2k
views
How does long reads help in the repeated regions of the genome
Illumina
short-reads
long-reads
ONT
updated 10 months ago by
Ram
43k • written 3.6 years ago by
Ashi
▴ 20
0
votes
0
replies
762
views
How to find all positions of one particular contig to which the short reads have been mapped?
bwa
sam
mapping
longreads
shortreads
3.7 years ago by
Ashi
▴ 20
0
votes
0
replies
612
views
How to check contiguity of reads mapped in BWA
Long-reads
contiguity
mapping
BWA
updated 12 months ago by
Ram
43k • written 3.7 years ago by
Ashi
▴ 20
1
vote
1
reply
1.6k
views
What are best Long read simulator generating Oxford Nanopore Reads
Long-reads
Simulator
ONT
updated 10 months ago by
Ram
43k • written 3.7 years ago by
Ashi
▴ 20
0
votes
1
reply
747
views
Comment:
C: How to see set of short reads mapped to a particular long read
3.8 years ago by
Ashi
▴ 20
3
votes
4
replies
747
views
How to see set of short reads mapped to a particular long read
Mapping
BWA
updated 10 months ago by
Ram
43k • written 3.8 years ago by
Ashi
▴ 20
0
votes
0
replies
1.1k
views
Comment:
C: How to find mapped regions in the reference genome
3.8 years ago by
Ashi
▴ 20
0
votes
1
reply
1.1k
views
Comment:
C: How to find mapped regions in the reference genome
3.8 years ago by
Ashi
▴ 20
0
votes
4
replies
1.1k
views
How to find mapped regions in the reference genome
alignment
sequencing
genome
LongReads
BWA
3.8 years ago by
Ashi
▴ 20
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