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Recommendations for extending contigs from denovo assembly to identify SV insertion sites on chromosome
Nanopore WGS Long-Read SV Assembly
updated 2.1 years ago by 20k • written 2.1 years ago by ▴ 70
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0
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843
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Recommended workflow for identifying the genomic location and copy-number of an insert with a known sequence from WGS Nanopore fastq files
Nanopore WGS Long-Read
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 70
3
votes
8
replies
7.7k
views
8 follow
Using AWS for Bioinformatics
unix Cluster
updated 2.7 years ago by 2.9k • written 4.1 years ago by ▴ 70
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0
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1.8k
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Comment: Comment: Handling Multiple Sequencing Runs in scRNA-seq
3.1 years ago by dk0319 ▴ 70
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1
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1.8k
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Comment: Comment: Handling Multiple Sequencing Runs in scRNA-seq
3.1 years ago by dk0319 ▴ 70
0
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2
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1.8k
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Comment: Comment: Handling Multiple Sequencing Runs in scRNA-seq
3.1 years ago by dk0319 ▴ 70
1
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6
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1.8k
views
Handling Multiple Sequencing Runs in scRNA-seq
scRNA-seq
3.1 years ago by dk0319 ▴ 70
0
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1
reply
945
views
Harmonized RNA-Seq Analysis of Different GDC Queried Projects
GDC Normalization DGE RNA-Seq
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 70
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0
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10k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.4 years ago by dk0319 ▴ 70
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1
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3.8k
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Comment: Comment: Genome Size Estimation with Jellyfish and Genome Scope is Unexpectedly Small
4.0 years ago by dk0319 ▴ 70
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2
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3.8k
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Comment: Comment: Genome Size Estimation with Jellyfish and Genome Scope is Unexpectedly Small
4.0 years ago by dk0319 ▴ 70
6
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7
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3.8k
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Genome Size Estimation with Jellyfish and Genome Scope is Unexpectedly Small
genome ChIP-Seq jellyfish
updated 4.0 years ago by 56k • written 4.0 years ago by ▴ 70
0
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0
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716
views
How best to handle multiple probes for single genes in survival analysis of Geo data
expression microarray gene
4.1 years ago by dk0319 ▴ 70
4
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4
replies
2.9k
views
Database for Enhancers with Coordinates
ChIP-Seq genome
updated 4.2 years ago by ★ 3.1k • written 4.2 years ago by ▴ 70
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1
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1.5k
views
Forum: Opinions on SLAM-Seq for Differential Gene Analysis
DGE RNA-Seq htseq
updated 4.4 years ago by ★ 7.8k • written 4.4 years ago by ▴ 70
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0
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1.1k
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Comment: Comment: Package to predict genomic variants from rna-seq read data
4.6 years ago by dk0319 ▴ 70
0
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3
replies
1.1k
views
Package to predict genomic variants from rna-seq read data
Genomics rna-seq
4.6 years ago by dk0319 ▴ 70
0
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1
reply
1.1k
views
Altering bioawk script to take list.txt file as a command line parameter
bash shell-script
updated 2.9 years ago by 45k • written 4.7 years ago by ▴ 70
3
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6
replies
2.1k
views
Selecting genotypes for a specific chromosome belonging to a specific patient from a multi patient VCF file
sequence
4.7 years ago by dk0319 ▴ 70
0
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1
reply
2.1k
views
Answer: Answer: Selecting genotypes for a specific chromosome belonging to a specific patient fr
4.7 years ago by dk0319 ▴ 70
0
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1
reply
2.1k
views
Comment: Comment: Selecting genotypes for a specific chromosome belonging to a specific patient fr
4.7 years ago by dk0319 ▴ 70
0
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1
reply
1.4k
views
Altering a python script to calculate GC content
sequence
updated 4.7 years ago by ★ 30k • written 4.7 years ago by ▴ 70
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0
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666
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Altering a python script to calculate GC content
sequence
4.7 years ago by dk0319 ▴ 70
0
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0
replies
899
views
Comment: C: How much sequencing coverage do you need in order to detect SNP's across the who
4.7 years ago by dk0319 ▴ 70
0
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2
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899
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How much sequencing coverage do you need in order to detect SNP's across the whole genome
sequencing SNP ChIP-Seq next-gen
4.7 years ago by dk0319 ▴ 70
1
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1
reply
1.0k
views
Bionano Saphyr Structural Variant ID and Genome Assembly
Assembly genome
updated 2.7 years ago by 45k • written 4.8 years ago by ▴ 70
0
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1
reply
3.5k
views
Comment: C: Pacific Bio Long Reads vs Illumina Short Reads
4.8 years ago by dk0319 ▴ 70
6
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5
replies
3.5k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 2.7 years ago by 45k • written 4.8 years ago by ▴ 70
1
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0
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4.1k
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Answer: A: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
5
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11
replies
4.1k
views
Large Count Discrepancy of Key Gene Between STAR and HISAT2
RNA-Seq alignment
4.9 years ago by dk0319 ▴ 70
0
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0
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4.1k
views
Comment: C: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
3
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2
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2.6k
views
Best way to get gene IDs for Salmon transcript output
RNA-Seq R
4.9 years ago by dk0319 ▴ 70
1
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0
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2.6k
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Answer: A: Best way to get gene IDs for Salmon transcript output
4.9 years ago by dk0319 ▴ 70
0
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0
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2.1k
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Comment: C: Using bedtools to identify genes that have overlapping chip-seq peaks
4.9 years ago by dk0319 ▴ 70
1
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0
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2.7k
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Comment: C: Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
updated 4.9 years ago by 154k • written 4.9 years ago by ▴ 70
1
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1
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2.7k
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Comment: C: Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
4.9 years ago by dk0319 ▴ 70
10
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6
replies
2.7k
views
Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
RNA-Seq alignment
updated 4.9 years ago by 15k • written 4.9 years ago by ▴ 70
0
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1
reply
4.1k
views
Comment: C: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
0
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1
reply
4.1k
views
Comment: C: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
0
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0
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4.1k
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Comment: C: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
0
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0
replies
4.1k
views
Comment: C: Large Count Discrepancy of Key Gene Between STAR and HISAT2
4.9 years ago by dk0319 ▴ 70
0
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0
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2.5k
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Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
0
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1
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2.5k
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Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
0
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1
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2.5k
views
Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
0
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1
reply
2.5k
views
Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
0
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1
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2.5k
views
Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
0
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1
reply
2.5k
views
Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
5.0 years ago by dk0319 ▴ 70
3
votes
13
replies
2.5k
views
Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
rna-seq
updated 5.0 years ago by ★ 3.9k • written 5.0 years ago by ▴ 70
0
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0
replies
1.8k
views
Comment: C: Tools for generating a list of known DNA binding motifs for a DNA binding protei
5.0 years ago by dk0319 ▴ 70
2
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5
replies
1.8k
views
Tools for generating a list of known DNA binding motifs for a DNA binding protein
ChIP-Seq
updated 5.0 years ago by 36k • written 5.0 years ago by ▴ 70
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