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Showing :
questions
4
votes
6
replies
3.9k
views
IDT vs primer 3 - PCR dimerisation
PCR
primer3
IDT
primer
updated 14 months ago by
Emrah
• 0 • written 4.2 years ago by
timothy.kirkwood
▴ 140
2
votes
4
replies
1.0k
views
remote tblastn database name(s)
blast
database
tblastn
updated 18 months ago by
Mensur Dlakic
★ 28k • written 18 months ago by
timothy.kirkwood
▴ 140
0
votes
3
replies
663
views
HSP of length 0
alignment
blastp
updated 20 months ago by
GenoMax
147k • written 20 months ago by
timothy.kirkwood
▴ 140
2
votes
2
replies
857
views
All vs all blast - unexpected results
alignment
seg
blastp
21 months ago by
timothy.kirkwood
▴ 140
5
votes
6
replies
1.6k
views
NCBI - incomplete protein annotations
ncbi
blast
refseq
21 months ago by
timothy.kirkwood
▴ 140
0
votes
0
replies
508
views
homology and protein function inference
homology
evolution
function
2.3 years ago by
timothy.kirkwood
▴ 140
2
votes
2
replies
726
views
pfam functional redundancy
redundancy
protein
pfam
domain
function
2.5 years ago by
timothy.kirkwood
▴ 140
0
votes
0
replies
463
views
Nucleotide codes - gap vs low quality basecalls
assembly
ncbi
gap
basecall
nucleotide
2.5 years ago by
timothy.kirkwood
▴ 140
2
votes
3
replies
1.1k
views
BLAST+ v2.10.1 file accessibility
python
blastp
3.0 years ago by
timothy.kirkwood
▴ 140
4
votes
3
replies
1.3k
views
Inferring homology from BLAST scores/statistics
statistics
blast
updated 3.1 years ago by
Mensur Dlakic
★ 28k • written 3.1 years ago by
timothy.kirkwood
▴ 140
1
vote
2
replies
1.5k
views
Remote blast query limit
remote
blast
3.2 years ago by
timothy.kirkwood
▴ 140
0
votes
4
replies
2.6k
views
BLAST masking
masking
database
blastp
3.2 years ago by
timothy.kirkwood
▴ 140
0
votes
0
replies
592
views
BLASTP - parameters for soft filtering and smith-waterman alignment
seg
soft-filtering
blastp
updated 3.3 years ago by
Ram
44k • written 3.3 years ago by
timothy.kirkwood
▴ 140
0
votes
0
replies
583
views
Visualising SeqRecords with compound locations
genbank
snapgene
benchling
biopython
3.4 years ago by
timothy.kirkwood
▴ 140
2
votes
1
reply
997
views
Biopython SeqRecord alphabet compatibility
alphabet
biopython
3.4 years ago by
timothy.kirkwood
▴ 140
3
votes
2
replies
2.8k
views
What are the makeblastdb database files doing?
blastp
database
3.4 years ago by
timothy.kirkwood
▴ 140
17
votes
14
replies
2.2k
views
6 follow
Orthologs vs PFAM
ortholog
pfam
updated 3.3 years ago by
lieven.sterck
15k • written 3.4 years ago by
timothy.kirkwood
▴ 140
0
votes
2
replies
857
views
Building a phylogenetic tree from different ortholog groups
COGs
phylogenetics
msa
3.4 years ago by
timothy.kirkwood
▴ 140
1
vote
2
replies
935
views
BLASTP local vs website
blastp
3.4 years ago by
timothy.kirkwood
▴ 140
3
votes
2
replies
1.6k
views
Nucleotide BLAST
BLAST
updated 3.5 years ago by
lieven.sterck
15k • written 3.5 years ago by
timothy.kirkwood
▴ 140
8
votes
9
replies
2.3k
views
BLASTP - HSPs and bitscores
BLASTP
hsp
bit-score
updated 3.7 years ago by
lieven.sterck
15k • written 3.7 years ago by
timothy.kirkwood
▴ 140
7
votes
4
replies
4.3k
views
BLAST parallelisation best practices
multiprocessing
python3.7
num_threads
BLASTP
updated 20 months ago by
Ram
44k • written 3.8 years ago by
timothy.kirkwood
▴ 140
2
votes
2
replies
1.9k
views
Building a BLAST database with the python subprocess module
python3.7
subprocess
makeblastdb
updated 20 months ago by
Ram
44k • written 4.0 years ago by
timothy.kirkwood
▴ 140
5
votes
6
replies
2.8k
views
Joining multiple query keys in entrez Efetch
entrez
Efetch
biopython
NCBI
4.0 years ago by
timothy.kirkwood
▴ 140
2
votes
6
replies
1.6k
views
MultiGeneBlast gui vs command prompt
MultiGeneBlast
antiSMASH v5
4.0 years ago by
timothy.kirkwood
▴ 140
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