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Job: Bioinformatics Analyst/Post-Doctoral Associate (UT MD Anderson Cancer Center)
Genomics Immuno-Oncology Cancer-Bioinformatics Single-Cell
written 2.6 years ago by ▴ 300
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CNV loss and high expression
Copy expression number
updated 3.0 years ago by 6.2k • written 3.0 years ago by ▴ 300
8
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8
replies
11k
views
7 follow
Extract Reads In Fastq Using A Bed File.
fastq bed
updated 3.2 years ago by • 0 • written 11.9 years ago by ▴ 300
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3
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1.6k
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TCGA Copy Number Data in Rdata format
TCGA Copy Number R Format
updated 4.4 years ago by • 0 • written 6.9 years ago by ▴ 300
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6
replies
5.6k
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Whole Exome From Whole Genome
exome genome
updated 5.1 years ago by 20 • written 13.3 years ago by ▴ 300
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1
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1.1k
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Driver analysis MutPanning trouble
Driver-Passenger Analysis next-gen
updated 5.1 years ago by • 0 • written 5.2 years ago by ▴ 300
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1
reply
1.8k
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deepTools white dots on black background
deeptools
updated 5.2 years ago by 20 • written 8.1 years ago by ▴ 300
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1
reply
4.0k
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Comment: C: KeyError in MACS2
updated 5.4 years ago by 45k • written 9.3 years ago by ▴ 300
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4.0k
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Comment: C: KeyError in MACS2
updated 5.4 years ago by 45k • written 9.3 years ago by ▴ 300
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0
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20k
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Comment: C: Vcf To Maf (Mutation Annotation Format) Conversion ?
updated 5.6 years ago by 45k • written 13.4 years ago by ▴ 300
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Comment: C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.8 years ago by Kasthuri ▴ 300
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1.5k
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Comment: C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.8 years ago by Kasthuri ▴ 300
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4
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1.5k
views
Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
ChIP-Seq Enhancer
5.8 years ago by Kasthuri ▴ 300
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1.9k
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Comment: C: EdgeR differential expression and heatmap
6.3 years ago by Kasthuri ▴ 300
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2
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1.9k
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EdgeR differential expression and heatmap
RNA-Seq
6.3 years ago by Kasthuri ▴ 300
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1
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8.4k
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Comment: C: Error in GDCprepare
6.3 years ago by Kasthuri ▴ 300
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1
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8.4k
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Comment: C: Error in GDCprepare
6.3 years ago by Kasthuri ▴ 300
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1
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8.4k
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Comment: C: Error in GDCprepare
6.3 years ago by Kasthuri ▴ 300
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1
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8.4k
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Comment: C: Error in GDCprepare
6.3 years ago by Kasthuri ▴ 300
5
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10
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8.4k
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Error in GDCprepare
TCGA
6.3 years ago by Kasthuri ▴ 300
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1
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1.1k
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Comment: C: Does mitotic activity inversely correlate with HiC interactions data?
6.7 years ago by Kasthuri ▴ 300
3
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3
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1.1k
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Does mitotic activity inversely correlate with HiC interactions data?
next-gen
updated 6.7 years ago by 27k • written 6.7 years ago by ▴ 300
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1.1k
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Comment: C: Expanding bed format into single nucleotide resolution
6.7 years ago by Kasthuri ▴ 300
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2
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1.1k
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Expanding bed format into single nucleotide resolution
genome
updated 6.7 years ago by 36k • written 6.7 years ago by ▴ 300
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1
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874
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Whole exomes - More than 3 time points
next-gen
6.8 years ago by Kasthuri ▴ 300
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0
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1.6k
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Comment: C: TCGA Copy Number Data in Rdata format
6.9 years ago by Kasthuri ▴ 300
0
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5
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5.5k
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Allele frequency of a gene from a .bam file.
allele frequency
updated 7.4 years ago by • 0 • written 8.1 years ago by ▴ 300
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0
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4.0k
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Comment: C: sciClone + clonEvol on WES
7.9 years ago by Kasthuri ▴ 300
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2
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4.0k
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sciClone + clonEvol on WES
Clonality Analysis
updated 7.9 years ago by ▴ 330 • written 7.9 years ago by ▴ 300
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0
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Comment: C: ATAC data analysis
7.9 years ago by Kasthuri ▴ 300
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1
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3.5k
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Comment: C: ATAC data analysis
7.9 years ago by Kasthuri ▴ 300
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1
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3.5k
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Answer: A: ATAC data analysis
7.9 years ago by Kasthuri ▴ 300
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1
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3.5k
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Comment: C: .clc to fastq
8.0 years ago by Kasthuri ▴ 300
2
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3
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3.5k
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.clc to fastq
RNA-Seq clc work bench
8.0 years ago by Kasthuri ▴ 300
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0
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2.3k
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Comment: C: Do I have to realign from scratch?
8.1 years ago by Kasthuri ▴ 300
8
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5
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2.3k
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Do I have to realign from scratch?
GATK incompatible contigs
updated 8.1 years ago by 151k • written 8.1 years ago by ▴ 300
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0
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5.5k
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Comment: C: Allele frequency of a gene from a .bam file.
8.1 years ago by Kasthuri ▴ 300
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0
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5.5k
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Comment: C: Allele frequency of a gene from a .bam file.
8.1 years ago by Kasthuri ▴ 300
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0
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1.8k
views
Answer: A: deepTools white dots on black background
8.1 years ago by Kasthuri ▴ 300
0
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1
reply
2.2k
views
Running MSigDB locally *without* expression data
MSigDB command-line
updated 8.3 years ago by ★ 2.1k • written 9.3 years ago by ▴ 300
1
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0
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4.0k
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Comment: C: KeyError in MACS2
9.3 years ago by Kasthuri ▴ 300
5
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6
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4.0k
views
KeyError in MACS2
ChIP-Seq MACS2
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 300
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0
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3.3k
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Comment: Comment: Identifying germline and tumor samples
updated 4.1 years ago by 45k • written 10.6 years ago by ▴ 300
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1
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3.3k
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Comment: Comment: Identifying germline and tumor samples
updated 4.1 years ago by 45k • written 10.6 years ago by ▴ 300
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1
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3.3k
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Comment: Comment: Identifying germline and tumor samples
updated 4.1 years ago by 45k • written 10.6 years ago by ▴ 300
2
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9
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3.3k
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Identifying germline and tumor samples
Germline Tumor Normal
updated 4.1 years ago by 45k • written 10.6 years ago by ▴ 300
0
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1
reply
3.3k
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Comment: Comment: Question about CREST
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 300
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0
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5.7k
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Comment: C: Tools For Structural Variants
11.1 years ago by Kasthuri ▴ 300
8
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4
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5.7k
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Tools For Structural Variants
structural breakdancer
updated 11.1 years ago by ▴ 230 • written 11.1 years ago by ▴ 300
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0
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5.7k
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Comment: C: Tools For Structural Variants
11.1 years ago by Kasthuri ▴ 300
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