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votes
3
replies
1.2k
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Job:
Bioinformatics Analyst/Post-Doctoral Associate (UT MD Anderson Cancer Center)
Genomics
Immuno-Oncology
Cancer-Bioinformatics
Single-Cell
written 23 months ago by
Kasthuri
▴ 300
0
votes
1
reply
542
views
CNV loss and high expression
Copy
expression
number
updated 2.3 years ago by
iraun
6.2k • written 2.3 years ago by
Kasthuri
▴ 300
7
votes
8
replies
9.8k
views
7 follow
Extract Reads In Fastq Using A Bed File.
fastq
bed
updated 2.5 years ago by
fenrir.sivar
• 0 • written 11.2 years ago by
Kasthuri
▴ 300
0
votes
3
replies
1.4k
views
TCGA Copy Number Data in Rdata format
TCGA Copy Number
R Format
updated 3.7 years ago by
zhoujun.nmu
• 0 • written 6.2 years ago by
Kasthuri
▴ 300
11
votes
6
replies
5.3k
views
Whole Exome From Whole Genome
exome
genome
updated 4.4 years ago by
Biostar
20 • written 12.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
975
views
Driver analysis MutPanning trouble
Driver-Passenger Analysis
next-gen
updated 4.4 years ago by
android89
• 0 • written 4.5 years ago by
Kasthuri
▴ 300
0
votes
1
reply
1.7k
views
deepTools white dots on black background
deeptools
updated 4.5 years ago by
Biostar
20 • written 7.4 years ago by
Kasthuri
▴ 300
1
vote
1
reply
3.6k
views
Comment:
C: KeyError in MACS2
updated 4.7 years ago by
Ram
44k • written 8.6 years ago by
Kasthuri
▴ 300
0
votes
0
replies
3.6k
views
Comment:
C: KeyError in MACS2
updated 4.7 years ago by
Ram
44k • written 8.6 years ago by
Kasthuri
▴ 300
0
votes
0
replies
19k
views
Comment:
C: Vcf To Maf (Mutation Annotation Format) Conversion ?
updated 4.9 years ago by
Ram
44k • written 12.6 years ago by
Kasthuri
▴ 300
0
votes
0
replies
1.3k
views
Comment:
C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.0 years ago by
Kasthuri
▴ 300
0
votes
1
reply
1.3k
views
Comment:
C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.0 years ago by
Kasthuri
▴ 300
0
votes
4
replies
1.3k
views
Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
ChIP-Seq
Enhancer
5.0 years ago by
Kasthuri
▴ 300
0
votes
0
replies
1.7k
views
Comment:
C: EdgeR differential expression and heatmap
5.6 years ago by
Kasthuri
▴ 300
1
vote
2
replies
1.7k
views
EdgeR differential expression and heatmap
RNA-Seq
5.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
7.2k
views
Comment:
C: Error in GDCprepare
5.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
7.2k
views
Comment:
C: Error in GDCprepare
5.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
7.2k
views
Comment:
C: Error in GDCprepare
5.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
7.2k
views
Comment:
C: Error in GDCprepare
5.6 years ago by
Kasthuri
▴ 300
5
votes
10
replies
7.2k
views
Error in GDCprepare
TCGA
5.6 years ago by
Kasthuri
▴ 300
0
votes
1
reply
954
views
Comment:
C: Does mitotic activity inversely correlate with HiC interactions data?
6.0 years ago by
Kasthuri
▴ 300
3
votes
3
replies
954
views
Does mitotic activity inversely correlate with HiC interactions data?
next-gen
updated 6.0 years ago by
Jean-Karim Heriche
27k • written 6.0 years ago by
Kasthuri
▴ 300
0
votes
0
replies
903
views
Comment:
C: Expanding bed format into single nucleotide resolution
6.0 years ago by
Kasthuri
▴ 300
1
vote
2
replies
903
views
Expanding bed format into single nucleotide resolution
genome
updated 6.0 years ago by
Alex Reynolds
35k • written 6.0 years ago by
Kasthuri
▴ 300
0
votes
1
reply
794
views
Whole exomes - More than 3 time points
next-gen
6.1 years ago by
Kasthuri
▴ 300
0
votes
0
replies
1.4k
views
Comment:
C: TCGA Copy Number Data in Rdata format
6.2 years ago by
Kasthuri
▴ 300
0
votes
5
replies
5.1k
views
Allele frequency of a gene from a .bam file.
allele frequency
updated 6.6 years ago by
azmanr
• 0 • written 7.4 years ago by
Kasthuri
▴ 300
0
votes
0
replies
3.7k
views
Comment:
C: sciClone + clonEvol on WES
7.1 years ago by
Kasthuri
▴ 300
1
vote
2
replies
3.7k
views
sciClone + clonEvol on WES
Clonality Analysis
updated 7.1 years ago by
Samuel Brady
▴ 330 • written 7.2 years ago by
Kasthuri
▴ 300
1
vote
0
replies
3.2k
views
Comment:
C: ATAC data analysis
7.2 years ago by
Kasthuri
▴ 300
0
votes
1
reply
3.2k
views
Comment:
C: ATAC data analysis
7.2 years ago by
Kasthuri
▴ 300
2
votes
1
reply
3.2k
views
Answer:
A: ATAC data analysis
7.2 years ago by
Kasthuri
▴ 300
0
votes
1
reply
3.1k
views
Comment:
C: .clc to fastq
7.3 years ago by
Kasthuri
▴ 300
2
votes
3
replies
3.1k
views
.clc to fastq
RNA-Seq
clc work bench
7.3 years ago by
Kasthuri
▴ 300
0
votes
0
replies
2.0k
views
Comment:
C: Do I have to realign from scratch?
7.4 years ago by
Kasthuri
▴ 300
8
votes
5
replies
2.0k
views
Do I have to realign from scratch?
GATK
incompatible contigs
updated 7.4 years ago by
GenoMax
145k • written 7.4 years ago by
Kasthuri
▴ 300
0
votes
0
replies
5.1k
views
Comment:
C: Allele frequency of a gene from a .bam file.
7.4 years ago by
Kasthuri
▴ 300
0
votes
0
replies
5.1k
views
Comment:
C: Allele frequency of a gene from a .bam file.
7.4 years ago by
Kasthuri
▴ 300
0
votes
0
replies
1.7k
views
Answer:
A: deepTools white dots on black background
7.4 years ago by
Kasthuri
▴ 300
0
votes
1
reply
2.1k
views
Running MSigDB locally *without* expression data
MSigDB
command-line
updated 7.6 years ago by
predeus
★ 2.0k • written 8.6 years ago by
Kasthuri
▴ 300
1
vote
0
replies
3.6k
views
Comment:
C: KeyError in MACS2
8.6 years ago by
Kasthuri
▴ 300
5
votes
6
replies
3.6k
views
KeyError in MACS2
ChIP-Seq
MACS2
updated 2.1 years ago by
Ram
44k • written 8.6 years ago by
Kasthuri
▴ 300
0
votes
0
replies
3.0k
views
Comment:
Comment: Identifying germline and tumor samples
updated 3.4 years ago by
Ram
44k • written 9.9 years ago by
Kasthuri
▴ 300
0
votes
1
reply
3.0k
views
Comment:
Comment: Identifying germline and tumor samples
updated 3.4 years ago by
Ram
44k • written 9.9 years ago by
Kasthuri
▴ 300
0
votes
1
reply
3.0k
views
Comment:
Comment: Identifying germline and tumor samples
updated 3.4 years ago by
Ram
44k • written 9.9 years ago by
Kasthuri
▴ 300
2
votes
9
replies
3.0k
views
Identifying germline and tumor samples
Germline
Tumor
Normal
updated 3.4 years ago by
Ram
44k • written 9.9 years ago by
Kasthuri
▴ 300
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about CREST
updated 2.6 years ago by
Ram
44k • written 9.9 years ago by
Kasthuri
▴ 300
0
votes
0
replies
5.4k
views
Comment:
C: Tools For Structural Variants
10.4 years ago by
Kasthuri
▴ 300
8
votes
4
replies
5.4k
views
Tools For Structural Variants
structural
breakdancer
updated 10.4 years ago by
mdm-two
▴ 230 • written 10.4 years ago by
Kasthuri
▴ 300
0
votes
0
replies
5.4k
views
Comment:
C: Tools For Structural Variants
10.4 years ago by
Kasthuri
▴ 300
64 results • Page
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