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3
votes
6
replies
1.5k
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How to remove duplicated SNPs based on MAF with Plink?
SNPs Plink2 duplication maf
updated 3 hours ago by 89k • written 11 months ago by ▴ 30
0
votes
0
replies
466
views
Does Beagle use the reference genome for both phasing AND imputing genotypes?
beagle genotypes phasing imputation
5 months ago by giulia.trauzzi ▴ 30
1
vote
2
replies
1.3k
views
Installing ggpubr in Docker container rocker/r-base??
ggpubr dockerfile docker r
updated 8 months ago by 45k • written 8 months ago by ▴ 30
0
votes
1
reply
1.5k
views
Comment: Comment: How to remove duplicated SNPs based on MAF with Plink?
9 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.5k
views
Comment: Comment: How to remove duplicated SNPs based on MAF with Plink?
9 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
387
views
GWAS() function error rrBLUP package for GWAS
R Rstudio rrBLUP GWAS
updated 12 months ago by 45k • written 12 months ago by ▴ 30
0
votes
1
reply
1.1k
views
Answer: Answer: Somatic Variant Calling from Nanopore Data
14 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.4k
views
Comment: Comment: AWK for replacing the content of a column in a csv file with the content of anot
14 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.4k
views
Comment: Comment: AWK for replacing the content of a column in a csv file with the content of anot
14 months ago by giulia.trauzzi ▴ 30
2
votes
4
replies
1.4k
views
AWK for replacing the content of a column in a csv file with the content of another column from another csv WITHOUT USING THE COLUMN NUMBER
bash awk csv
updated 14 months ago by 154k • written 14 months ago by ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
1
vote
0
replies
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
14
votes
15
replies
3.9k
views
How to give 2 input files (one from the process before and one from 3 processes before) in nextflow pipeline?
nextflow nf-core processes channels
updated 14 months ago by 8.1k • written 14 months ago by ▴ 30
0
votes
2
replies
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
1
vote
1
reply
3.9k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
14 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
3.2k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
14 months ago by giulia.trauzzi ▴ 30
2
votes
10
replies
3.2k
views
bcl-convert cannot create output directory structure at the path specified
illumina reads bcl-convert index demultiplexing
14 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
3.2k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
17 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
3.2k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
17 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
3.2k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
17 months ago by giulia.trauzzi ▴ 30
0
votes
3
replies
2.8k
views
Running STRUCTURE from command line
STRUCTURE
updated 17 months ago by 45k • written 4.5 years ago by ▴ 30
0
votes
2
replies
2.7k
views
Comment: Comment: Porechop output?
20 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
2.7k
views
Comment: Comment: Porechop output?
20 months ago by giulia.trauzzi ▴ 30
5
votes
9
replies
2.7k
views
Porechop output?
porechop Nanopore
updated 20 months ago by 154k • written 20 months ago by ▴ 30
0
votes
1
reply
2.7k
views
Comment: Comment: Porechop output?
20 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
69k
views
Comment: Comment: Subsampling Bam File With Samtools
22 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
69k
views
Comment: Comment: Subsampling Bam File With Samtools
22 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
2.0k
views
Comment: Comment: Ipyrad de novo for variant calling
22 months ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.8k
views
Comment: Comment: Run metrics of Oxford Nanopore reads and visualisation of alignment
22 months ago by giulia.trauzzi ▴ 30
2
votes
2
replies
1.8k
views
Run metrics of Oxford Nanopore reads and visualisation of alignment
Nanopore alignment sequencing
22 months ago by giulia.trauzzi ▴ 30
1
vote
7
replies
7.6k
views
Plink1.9 error -chr not recognised
unix plink
updated 3.0 years ago by • 0 • written 4.5 years ago by ▴ 30
0
votes
3
replies
2.0k
views
Ipyrad de novo for variant calling
snps
22 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
7.6k
views
Comment: Comment: Plink1.9 error -chr not recognised
4.0 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
2.7k
views
Comment: Comment: Tajima'D and low-density SNP data
4.2 years ago by giulia.trauzzi ▴ 30
1
vote
0
replies
944
views
Why does STRUCTURE v2.3.4 (command line) does not work?
STRUCTURE SNPs bash
4.3 years ago by giulia.trauzzi ▴ 30
0
votes
4
replies
2.1k
views
Genepop for LD testing SNPs dataset
linkage genepop SNPs
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 30
0
votes
2
replies
2.1k
views
Comment: Comment: Genepop for LD testing SNPs dataset
4.5 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
7.6k
views
Comment: Comment: Plink1.9 error -chr not recognised
4.5 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
9.9k
views
Comment: C: Extremely low mapping rates with bowtie2
4.6 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
923
views
How many GBS derived reads pass filters after demultiplexing, adapter removal, trimming and filtering?
GBS SNP Stacks Cutadapt
4.7 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
938
views
Can I use FLEXBAR to detect and remove barcodes out of my short reads without demultiplexing ?
short reads Illumina barcodes removal FLEXBAR
4.7 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
1.2k
views
Trimming Illumina Seq with TRIMMOMATIC
trimmomatic GBS Illumina
4.7 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.8k
views
Comment: C: Merging .fq files per sample using a big loop - BASH?
4.7 years ago by giulia.trauzzi ▴ 30
3
votes
8
replies
1.8k
views
Merging .fq files per sample using a big loop - BASH?
fastq bash genomics
updated 2.6 years ago by 45k • written 4.7 years ago by ▴ 30
1
vote
2
replies
1.0k
views
Mean sample depth?
depth SNP
4.7 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.5k
views
Pairwise Fst values derived from different algorithms?
Fst pairwise Fst population genetics statistics
4.8 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.3k
views
csv file format conversion to arp bash command line
bash population-genetics
updated 2.6 years ago by 45k • written 4.9 years ago by ▴ 30
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