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Comment: Comment: Making heatmaps of ATACseq annotation data in R?
15 months ago by Ming Tommy Tang ★ 4.7k
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0
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1.1k
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Comment: Comment: Clusters in Differential Gene Expression Data
15 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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924
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Tutorial: SingleCellExperiment object explained with a real-world example
bioconductor scRNA-seq single-cell
updated 15 months ago by 45k • written 15 months ago by ★ 4.7k
7
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5
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2.1k
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Tutorial: how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix RNAseq R
updated 16 months ago by • 0 • written 17 months ago by ★ 4.7k
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0
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2.4k
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Comment: Comment: Transcription Start Site
18 months ago by Ming Tommy Tang ★ 4.7k
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0
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1.3k
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Comment: Comment: scRNAseq normalization
18 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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6.0k
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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
18 months ago by Ming Tommy Tang ★ 4.7k
6
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0
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1.4k
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Tutorial: 12 useful command line tools and tricks for genomics data science
unix
updated 19 months ago by 12k • written 19 months ago by ★ 4.7k
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1
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881
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Comment: Comment: Deleting cells from seurat object
19 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.0k
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Tutorial: How to convert sra files to fastq files using parallelized fastq-dump
fastq sra
20 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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777
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Tutorial: How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cell dataset
seurat single-cell ggplot2
20 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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885
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Tutorial: How to Use Biomart to Find Mouse Orthologs for Human Genes
ids gene bioconductor
20 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.2k
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Comment: Comment: How to get enhancer regions
20 months ago by Ming Tommy Tang ★ 4.7k
0
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1
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2.2k
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Comment: Comment: How to get enhancer regions
20 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.3k
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Comment: Comment: How to covert my gene IDs to gene Symbols
20 months ago by Ming Tommy Tang ★ 4.7k
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0
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2.4k
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Comment: Comment: Mapping FASTQ files of scRNA-seq to reference genome
20 months ago by Ming Tommy Tang ★ 4.7k
2
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0
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1.9k
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Comment: Comment: How to get started in bioinformatics
20 months ago by Ming Tommy Tang ★ 4.7k
2
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2
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2.2k
views
Answer: Answer: How to get enhancer regions
20 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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854
views
Comment: Comment: annotation before integration
21 months ago by Ming Tommy Tang ★ 4.7k
3
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2
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1.9k
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Answer: Answer: How to rename multiple fasq files
21 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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781
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Tutorial: 4 CITE-seq tutorials
CTIE-seq
21 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.8k
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Comment: Comment: multi-omics data integration: a case study with transcriptomics and genomics mut
21 months ago by Ming Tommy Tang ★ 4.7k
3
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3
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1.8k
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Tutorial: multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation RNAseq multiomics
updated 20 months ago by ▴ 60 • written 2.1 years ago by ★ 4.7k
0
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0
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888
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Tutorial: download metadata using GEOquery
computational-biology GEO metadata
updated 21 months ago by 45k • written 21 months ago by ★ 4.7k
1
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0
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704
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Tutorial: CITEseq tutorial
CITEseq Alevin Seurat
21 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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5.1k
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Comment: Comment: New ebook: From cell line to Command line to learn computational biology
22 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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626
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Blog: How to use random forest for clustering
computational-biology random-forest
updated 22 months ago by 45k • written 22 months ago by ★ 4.7k
4
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2
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5.1k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
22 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
1.7k
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Comment: Comment: FPKM values for DE analysis - Why?
23 months ago by Ming Tommy Tang ★ 4.7k
2
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0
replies
1.0k
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Answer: Answer: Ensembl transcript IDs
23 months ago by Ming Tommy Tang ★ 4.7k
0
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1
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2.2k
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
23 months ago by Ming Tommy Tang ★ 4.7k
2
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1
reply
1.1k
views
Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
23 months ago by Ming Tommy Tang ★ 4.7k
2
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1
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1.2k
views
Answer: Answer: Downstream analysis during sc-ATAC seq
23 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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945
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Tutorial: How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq heatmap rstats TCGA
23 months ago by Ming Tommy Tang ★ 4.7k
6
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0
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9.2k
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Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
23 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.7k
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Comment: Comment: 10X scRNA-seq v2 odd fastq format
2.0 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
1.5k
views
Comment: Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
2.0 years ago by Ming Tommy Tang ★ 4.7k
3
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0
replies
1.2k
views
Comment: Comment: Seeking a real project
2.0 years ago by Ming Tommy Tang ★ 4.7k
3
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0
replies
1.4k
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Answer: Answer: Bulk and Single cell TCRSeq analysis
2.1 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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1.2k
views
Answer: Answer: Blocky p300 ChIP-seq reads
2.1 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.0k
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Comment: Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
2.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.1k
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Tutorial: T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq TCR single-cell computational biology
2.1 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.0k
views
Tutorial: cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome rstats spatial single-cell
2.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.6k
views
Comment: Comment: DMR Analysis for RRBS: what annotation file to I use?
2.1 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
1000
views
Comment: Comment: How to resample contacts data to lower bins
2.1 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.5k
views
Answer: Answer: Phasing Classical HLA Alleles
2.1 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
922
views
Tutorial: common mistakes in using spreadsheets
excel spreadsheet structured-data
updated 2.1 years ago by 45k • written 2.1 years ago by ★ 4.7k
0
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0
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3.1k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
2.1 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.1k
views
Tutorial: How to convert gene ids in R
computational-biology gene-id rstats
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 4.7k
0
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0
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2.1k
views
Comment: Comment: How to use UCSC genome browser to check the transcription factor binding at your
2.2 years ago by Ming Tommy Tang ★ 4.7k
477 results • Page 2 of 10
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