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0
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767
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Viral taxonomic classification question
taxonomic-classification viral-metagenomics
2.9 years ago by v.berriosfarias ▴ 140
4
votes
1
reply
571
views
Does anyone know if there is an implementation of overlaping kmeans algorithm in R ?
r partitional-clustering kmeans
updated 2.9 years ago by ★ 27k • written 2.9 years ago by ▴ 140
0
votes
1
reply
565
views
how to import multiple fastq files from NCBI without using fastq-dump?
curl wget multi-samples importing
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 140
0
votes
1
reply
1.4k
views
Maxbin2 usage for paired end reads
binning paired-end-reads
updated 2.9 years ago by • 0 • written 3.1 years ago by ▴ 140
0
votes
0
replies
479
views
should I scale a MASH matrix ?
scale MASH
3.1 years ago by v.berriosfarias ▴ 140
9
votes
4
replies
12k
views
Installing perl modules on a conda environment produce changes out of the environment?
conda perl
updated 3.1 years ago by 8.5k • written 3.1 years ago by ▴ 140
2
votes
2
replies
1.3k
views
making a PCA from MASH distance result
MASH R PCA
3.1 years ago by v.berriosfarias ▴ 140
1
vote
2
replies
1.2k
views
multiqc report, should I care for "Per Base Sequence Content" module if using metagenomic datasets?
fastqc multiqc
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 140
2
votes
4
replies
3.2k
views
How to extract sequences from fasta that have a certain length ?
minlength fasta
updated 3.1 years ago by 8.5k • written 3.1 years ago by ▴ 140
1
vote
4
replies
1.5k
views
BAM file's reference sequence IDs doesnt match contigs ID's
metagenomics alignment bam
updated 14 months ago by 43k • written 3.1 years ago by ▴ 140
4
votes
3
replies
1.3k
views
K-mer usage in metagenome assemblies
Assembly metagenomics k-mer
3.1 years ago by v.berriosfarias ▴ 140
1
vote
1
reply
886
views
On read sequencing libraries, the opposite strands are considered on the files? (and how are they handled on assembly?)
reads sequencing Assembly
3.2 years ago by v.berriosfarias ▴ 140
1
vote
1
reply
1.1k
views
fastp issue (trimming and read filtering tool)
fastp trimming adapter
3.3 years ago by v.berriosfarias ▴ 140
18
votes
13
replies
5.6k
views
How to extract a sequence below a fasta header (">") from a fasta file ?
fasta bash
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 140
1
vote
4
replies
2.9k
views
Is it possible to work with paired-end reads for assembly purposes using metaspades?
metaspades assembly paired-end reads
3.4 years ago by v.berriosfarias ▴ 140
3
votes
8
replies
1.6k
views
Tools for hard trimming?
bbmap trimming
3.1 years ago by v.berriosfarias ▴ 140
3
votes
6
replies
968
views
bowtie2 giving 0% alignment rato across all samples
bowtie2 alignment paired-end reads
3.5 years ago by v.berriosfarias ▴ 140
0
votes
0
replies
595
views
DeepMAsED installation and dependencies
DeepMAsED bash tensorflow scipy
3.6 years ago by v.berriosfarias ▴ 140
1
vote
6
replies
4.7k
views
bowtie2 using loop on bash with paired-ended reads
alignment sequence bowtie2 bash
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 140
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