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0
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0
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243
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Comment: Comment: featureCounts: ERROR: failed to find the gene identifier attribute
8 days ago by v.berriosfarias ▴ 100
2
votes
2
replies
243
views
featureCounts: ERROR: failed to find the gene identifier attribute
gtf featureCounts subread
updated 8 days ago by 129k • written 8 days ago by ▴ 100
0
votes
0
replies
126
views
Error when converting hmmsearch output to gff file
hmmer2gff gff hmmer
23 days ago by v.berriosfarias ▴ 100
1
vote
1
reply
230
views
error when converting hmmer table to off table
hmmer2gff gff hmmer
updated 23 days ago by 129k • written 24 days ago by ▴ 100
0
votes
0
replies
80
views
Trying to use hmmer to search genes over metagenome assembled genomes
MAGs genes hmmer
29 days ago by v.berriosfarias ▴ 100
0
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0
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439
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Comment: Comment: Any way to retrieve the annotation information of genomes under a bioproject ? (
7 weeks ago by v.berriosfarias ▴ 100
4
votes
3
replies
825
views
How to retrieve fastq files from NCBI using SRA accessions?
SRA fastq-dump
updated 7 weeks ago by 39k • written 13 months ago by ▴ 100
2
votes
3
replies
439
views
Any way to retrieve the annotation information of genomes under a bioproject ? (NCBI)
NCBI PGAP Bioproject annotation
7 weeks ago by v.berriosfarias ▴ 100
1
vote
1
reply
274
views
Assembly at lineage level from shotgun data ?
fungus MAGs assembly lineage
10 weeks ago by v.berriosfarias ▴ 100
0
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0
replies
972
views
Comment: Comment: how to remove a substring for multiple file names?
4 months ago by v.berriosfarias ▴ 100
0
votes
1
reply
346
views
Comment: Comment: trying to look the version of the programs under miniconda3 directory
4 months ago by v.berriosfarias ▴ 100
1
vote
4
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346
views
trying to look the version of the programs under miniconda3 directory
miniconda3 versions
updated 4 months ago by 72k • written 4 months ago by ▴ 100
1
vote
0
replies
242
views
Calculating read abundances across MAGs (question)
abundance Metagenomics paired-reads
4 months ago by v.berriosfarias ▴ 100
0
votes
2
replies
4.4k
views
OpenBLAS Warning : Detect OpenMP Loop and this application may hang. Please rebuild the library with USE_OPENMP=1 option
metawrap concoct conda openblas
updated 4 months ago by ▴ 60 • written 2.1 years ago by ▴ 100
0
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0
replies
221
views
Problem with Autometa binning tool
autometa
7 months ago by v.berriosfarias ▴ 100
2
votes
2
replies
619
views
megahit error exit code 6
megahit
updated 7 months ago by ★ 23k • written 7 months ago by ▴ 100
7
votes
6
replies
2.5k
views
How to cat 2 paired end reads files together in one file using loops for multiple libraries ?
paired-end-reads cat loops bash
updated 7 months ago by • 0 • written 2.1 years ago by ▴ 100
2
votes
0
replies
791
views
Answer: Answer: Antismash on Fasta files
8 months ago by v.berriosfarias ▴ 100
4
votes
3
replies
543
views
Does ASVs IDs from dada2 have specific taxonomic assignments?
dada2 R ASVs
updated 8 months ago by 9.6k • written 8 months ago by ▴ 100
0
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0
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543
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Comment: Comment: Does ASVs IDs from dada2 have specific taxonomic assignments?
8 months ago by v.berriosfarias ▴ 100
0
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0
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1.2k
views
Comment: Comment: Has anybody managed to install and run GroopM lately?
9 months ago by v.berriosfarias ▴ 100
2
votes
2
replies
1.2k
views
Answer: Answer: Has anybody managed to install and run GroopM lately?
9 months ago by v.berriosfarias ▴ 100
0
votes
0
replies
221
views
any way to merge functions of kegg orthologs database?
functional-profile metagenomics data-wrangling
10 months ago by v.berriosfarias ▴ 100
2
votes
1
reply
743
views
How to import conda environments to Rstudio?
Estudio conda
updated 10 months ago by 2.6k • written 10 months ago by ▴ 100
0
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0
replies
217
views
Is it normal that my amplicon sequence variants (ASVs) have gaps ?
ASVs DADA2 fasta
11 months ago by v.berriosfarias ▴ 100
0
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3
replies
475
views
How to add taxonomic information to fasta headers
MAGs taxonomy fasta
updated 11 months ago by 21k • written 11 months ago by ▴ 100
0
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0
replies
546
views
Comment: Comment: How to remove [ACTG] from file names in bash
11 months ago by v.berriosfarias ▴ 100
3
votes
5
replies
546
views
How to remove [ACTG] from file names in bash
bash substring
updated 11 months ago by 21k • written 11 months ago by ▴ 100
2
votes
3
replies
435
views
any tool for searching duplicated or redundant sequences in a database?
fasta database
updated 11 months ago by ▴ 370 • written 13 months ago by ▴ 100
0
votes
0
replies
178
views
problem with gene abundance calculation
bam gtf bash R GFF
11 months ago by v.berriosfarias ▴ 100
0
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0
replies
360
views
Comment: Comment: Problem when converting from blast output table to GTF file.
11 months ago by v.berriosfarias ▴ 100
3
votes
2
replies
360
views
Problem when converting from blast output table to GTF file.
gene GTF GFF
updated 11 months ago by 7.9k • written 11 months ago by ▴ 100
0
votes
1
reply
485
views
How to normalize gene abundance from metagenomic data?
gene-abundance normalization R metagenomics
updated 11 months ago by 9.6k • written 11 months ago by ▴ 100
3
votes
4
replies
528
views
Struggling with some data visualization in R
ggplot2 visualization R
updated 12 months ago by 11k • written 12 months ago by ▴ 100
0
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0
replies
493
views
Comment: Comment: gene abundance profiling from metagenomes
12 months ago by v.berriosfarias ▴ 100
1
vote
2
replies
493
views
gene abundance profiling from metagenomes
gene-abundance mapping metagenomics
12 months ago by v.berriosfarias ▴ 100
0
votes
1
reply
391
views
GRanges strand identification
GRanges R bam
updated 12 months ago by 3.6k • written 12 months ago by ▴ 100
1
vote
1
reply
445
views
statistical question (different number of gene orthologs on database)
database statistics
updated 12 months ago by 9.6k • written 12 months ago by ▴ 100
0
votes
1
reply
574
views
Comment: Comment: How to rearrange fasta headers
12 months ago by v.berriosfarias ▴ 100
2
votes
4
replies
574
views
How to rearrange fasta headers
fasta R bash string
updated 12 months ago by 21k • written 12 months ago by ▴ 100
0
votes
0
replies
327
views
MMseqs2 with paired end reads?
protein-profiling mmseqs2
13 months ago by v.berriosfarias ▴ 100
0
votes
0
replies
692
views
Comment: Comment: retrieving paired end sequencing data with fasts-dump
13 months ago by v.berriosfarias ▴ 100
0
votes
0
replies
692
views
Comment: Comment: retrieving paired end sequencing data with fasts-dump
13 months ago by v.berriosfarias ▴ 100
3
votes
5
replies
692
views
retrieving paired end sequencing data with fasts-dump
NCBI fastq sra-toolkit
updated 13 months ago by 98k • written 13 months ago by ▴ 100
0
votes
0
replies
209
views
How to perform a biplot having a genomic distance matrix and environmental metadata
PCoA ampvis2 R biplot vegan
13 months ago by v.berriosfarias ▴ 100
0
votes
0
replies
842
views
Comment: Comment: how to create a custom database (GTDB) ?
15 months ago by v.berriosfarias ▴ 100
3
votes
3
replies
730
views
retrieveing gene list from NCBI
NCBI gene perl
updated 17 months ago by 129k • written 17 months ago by ▴ 100
2
votes
3
replies
2.5k
views
Could NOT find ZLIB while running cmake
zlib cmake conda racon
updated 17 months ago by ★ 4.6k • written 17 months ago by ▴ 100
0
votes
0
replies
327
views
Pacbio and illumina assembly question
Pacbio assembly racon illumina
17 months ago by v.berriosfarias ▴ 100
0
votes
1
reply
1000
views
Comment: Comment: How to add taxonomic information for each fasta header ?
updated 17 months ago by 8.1k • written 17 months ago by ▴ 100
105 results • Page 1 of 3
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