Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
243
views
Comment:
Comment: featureCounts: ERROR: failed to find the gene identifier attribute
8 days ago by
v.berriosfarias
▴ 100
2
votes
2
replies
243
views
featureCounts: ERROR: failed to find the gene identifier attribute
gtf
featureCounts
subread
updated 8 days ago by
GenoMax
129k • written 8 days ago by
v.berriosfarias
▴ 100
0
votes
0
replies
126
views
Error when converting hmmsearch output to gff file
hmmer2gff
gff
hmmer
23 days ago by
v.berriosfarias
▴ 100
1
vote
1
reply
230
views
error when converting hmmer table to off table
hmmer2gff
gff
hmmer
updated 23 days ago by
GenoMax
129k • written 24 days ago by
v.berriosfarias
▴ 100
0
votes
0
replies
80
views
Trying to use hmmer to search genes over metagenome assembled genomes
MAGs
genes
hmmer
29 days ago by
v.berriosfarias
▴ 100
0
votes
0
replies
439
views
Comment:
Comment: Any way to retrieve the annotation information of genomes under a bioproject ? (
7 weeks ago by
v.berriosfarias
▴ 100
4
votes
3
replies
825
views
How to retrieve fastq files from NCBI using SRA accessions?
SRA
fastq-dump
updated 7 weeks ago by
Ram
39k • written 13 months ago by
v.berriosfarias
▴ 100
2
votes
3
replies
439
views
Any way to retrieve the annotation information of genomes under a bioproject ? (NCBI)
NCBI
PGAP
Bioproject
annotation
7 weeks ago by
v.berriosfarias
▴ 100
1
vote
1
reply
274
views
Assembly at lineage level from shotgun data ?
fungus
MAGs
assembly
lineage
10 weeks ago by
v.berriosfarias
▴ 100
0
votes
0
replies
972
views
Comment:
Comment: how to remove a substring for multiple file names?
4 months ago by
v.berriosfarias
▴ 100
0
votes
1
reply
346
views
Comment:
Comment: trying to look the version of the programs under miniconda3 directory
4 months ago by
v.berriosfarias
▴ 100
1
vote
4
replies
346
views
trying to look the version of the programs under miniconda3 directory
miniconda3
versions
updated 4 months ago by
ATpoint
72k • written 4 months ago by
v.berriosfarias
▴ 100
1
vote
0
replies
242
views
Calculating read abundances across MAGs (question)
abundance
Metagenomics
paired-reads
4 months ago by
v.berriosfarias
▴ 100
0
votes
2
replies
4.4k
views
OpenBLAS Warning : Detect OpenMP Loop and this application may hang. Please rebuild the library with USE_OPENMP=1 option
metawrap
concoct
conda
openblas
updated 4 months ago by
shengweima
▴ 60 • written 2.1 years ago by
v.berriosfarias
▴ 100
0
votes
0
replies
221
views
Problem with Autometa binning tool
autometa
7 months ago by
v.berriosfarias
▴ 100
2
votes
2
replies
619
views
megahit error exit code 6
megahit
updated 7 months ago by
Mensur Dlakic
★ 23k • written 7 months ago by
v.berriosfarias
▴ 100
7
votes
6
replies
2.5k
views
How to cat 2 paired end reads files together in one file using loops for multiple libraries ?
paired-end-reads
cat
loops
bash
updated 7 months ago by
ben@f
• 0 • written 2.1 years ago by
v.berriosfarias
▴ 100
2
votes
0
replies
791
views
Answer:
Answer: Antismash on Fasta files
8 months ago by
v.berriosfarias
▴ 100
4
votes
3
replies
543
views
Does ASVs IDs from dada2 have specific taxonomic assignments?
dada2
R
ASVs
updated 8 months ago by
Asaf
9.6k • written 8 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
543
views
Comment:
Comment: Does ASVs IDs from dada2 have specific taxonomic assignments?
8 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
1.2k
views
Comment:
Comment: Has anybody managed to install and run GroopM lately?
9 months ago by
v.berriosfarias
▴ 100
2
votes
2
replies
1.2k
views
Answer:
Answer: Has anybody managed to install and run GroopM lately?
9 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
221
views
any way to merge functions of kegg orthologs database?
functional-profile
metagenomics
data-wrangling
10 months ago by
v.berriosfarias
▴ 100
2
votes
1
reply
743
views
How to import conda environments to Rstudio?
Estudio
conda
updated 10 months ago by
LChart
2.6k • written 10 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
217
views
Is it normal that my amplicon sequence variants (ASVs) have gaps ?
ASVs
DADA2
fasta
11 months ago by
v.berriosfarias
▴ 100
0
votes
3
replies
475
views
How to add taxonomic information to fasta headers
MAGs
taxonomy
fasta
updated 11 months ago by
Joe
21k • written 11 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
546
views
Comment:
Comment: How to remove [ACTG] from file names in bash
11 months ago by
v.berriosfarias
▴ 100
3
votes
5
replies
546
views
How to remove [ACTG] from file names in bash
bash
substring
updated 11 months ago by
cpad0112
21k • written 11 months ago by
v.berriosfarias
▴ 100
2
votes
3
replies
435
views
any tool for searching duplicated or redundant sequences in a database?
fasta
database
updated 11 months ago by
Hugo
▴ 370 • written 13 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
178
views
problem with gene abundance calculation
bam
gtf
bash
R
GFF
11 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
360
views
Comment:
Comment: Problem when converting from blast output table to GTF file.
11 months ago by
v.berriosfarias
▴ 100
3
votes
2
replies
360
views
Problem when converting from blast output table to GTF file.
gene
GTF
GFF
updated 11 months ago by
Juke34
7.9k • written 11 months ago by
v.berriosfarias
▴ 100
0
votes
1
reply
485
views
How to normalize gene abundance from metagenomic data?
gene-abundance
normalization
R
metagenomics
updated 11 months ago by
Asaf
9.6k • written 11 months ago by
v.berriosfarias
▴ 100
3
votes
4
replies
528
views
Struggling with some data visualization in R
ggplot2
visualization
R
updated 12 months ago by
seidel
11k • written 12 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
493
views
Comment:
Comment: gene abundance profiling from metagenomes
12 months ago by
v.berriosfarias
▴ 100
1
vote
2
replies
493
views
gene abundance profiling from metagenomes
gene-abundance
mapping
metagenomics
12 months ago by
v.berriosfarias
▴ 100
0
votes
1
reply
391
views
GRanges strand identification
GRanges
R
bam
updated 12 months ago by
benformatics
3.6k • written 12 months ago by
v.berriosfarias
▴ 100
1
vote
1
reply
445
views
statistical question (different number of gene orthologs on database)
database
statistics
updated 12 months ago by
Asaf
9.6k • written 12 months ago by
v.berriosfarias
▴ 100
0
votes
1
reply
574
views
Comment:
Comment: How to rearrange fasta headers
12 months ago by
v.berriosfarias
▴ 100
2
votes
4
replies
574
views
How to rearrange fasta headers
fasta
R
bash
string
updated 12 months ago by
cpad0112
21k • written 12 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
327
views
MMseqs2 with paired end reads?
protein-profiling
mmseqs2
13 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
692
views
Comment:
Comment: retrieving paired end sequencing data with fasts-dump
13 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
692
views
Comment:
Comment: retrieving paired end sequencing data with fasts-dump
13 months ago by
v.berriosfarias
▴ 100
3
votes
5
replies
692
views
retrieving paired end sequencing data with fasts-dump
NCBI
fastq
sra-toolkit
updated 13 months ago by
Istvan Albert
98k • written 13 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
209
views
How to perform a biplot having a genomic distance matrix and environmental metadata
PCoA
ampvis2
R
biplot
vegan
13 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
842
views
Comment:
Comment: how to create a custom database (GTDB) ?
15 months ago by
v.berriosfarias
▴ 100
3
votes
3
replies
730
views
retrieveing gene list from NCBI
NCBI
gene
perl
updated 17 months ago by
GenoMax
129k • written 17 months ago by
v.berriosfarias
▴ 100
2
votes
3
replies
2.5k
views
Could NOT find ZLIB while running cmake
zlib
cmake
conda
racon
updated 17 months ago by
Sam
★ 4.6k • written 17 months ago by
v.berriosfarias
▴ 100
0
votes
0
replies
327
views
Pacbio and illumina assembly question
Pacbio
assembly
racon
illumina
17 months ago by
v.berriosfarias
▴ 100
0
votes
1
reply
1000
views
Comment:
Comment: How to add taxonomic information for each fasta header ?
updated 17 months ago by
shenwei356
8.1k • written 17 months ago by
v.berriosfarias
▴ 100
105 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6