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questions
0
votes
2
replies
762
views
Viral taxonomic classification question
taxonomic-classification
viral-metagenomics
2.9 years ago by
v.berriosfarias
▴ 140
4
votes
1
reply
567
views
Does anyone know if there is an implementation of overlaping kmeans algorithm in R ?
r
partitional-clustering
kmeans
updated 2.9 years ago by
Mensur Dlakic
★ 27k • written 2.9 years ago by
v.berriosfarias
▴ 140
0
votes
1
reply
552
views
how to import multiple fastq files from NCBI without using fastq-dump?
curl
wget
multi-samples
importing
updated 3.0 years ago by
GenoMax
142k • written 3.0 years ago by
v.berriosfarias
▴ 140
0
votes
1
reply
1.4k
views
Maxbin2 usage for paired end reads
binning
paired-end-reads
updated 2.8 years ago by
serene.s
• 0 • written 3.0 years ago by
v.berriosfarias
▴ 140
0
votes
0
replies
476
views
should I scale a MASH matrix ?
scale
MASH
3.0 years ago by
v.berriosfarias
▴ 140
9
votes
4
replies
12k
views
Installing perl modules on a conda environment produce changes out of the environment?
conda
perl
updated 3.0 years ago by
Philipp Bayer
8.4k • written 3.0 years ago by
v.berriosfarias
▴ 140
2
votes
2
replies
1.3k
views
making a PCA from MASH distance result
MASH
R
PCA
3.0 years ago by
v.berriosfarias
▴ 140
1
vote
2
replies
1.2k
views
multiqc report, should I care for "Per Base Sequence Content" module if using metagenomic datasets?
fastqc
multiqc
updated 3.1 years ago by
Ram
43k • written 3.1 years ago by
v.berriosfarias
▴ 140
2
votes
4
replies
3.1k
views
How to extract sequences from fasta that have a certain length ?
minlength
fasta
updated 3.1 years ago by
shenwei356
8.5k • written 3.1 years ago by
v.berriosfarias
▴ 140
1
vote
4
replies
1.4k
views
BAM file's reference sequence IDs doesnt match contigs ID's
metagenomics
alignment
bam
updated 13 months ago by
Ram
43k • written 3.1 years ago by
v.berriosfarias
▴ 140
4
votes
3
replies
1.3k
views
K-mer usage in metagenome assemblies
Assembly
metagenomics
k-mer
3.1 years ago by
v.berriosfarias
▴ 140
1
vote
1
reply
882
views
On read sequencing libraries, the opposite strands are considered on the files? (and how are they handled on assembly?)
reads
sequencing
Assembly
3.2 years ago by
v.berriosfarias
▴ 140
1
vote
1
reply
1.1k
views
fastp issue (trimming and read filtering tool)
fastp
trimming
adapter
3.2 years ago by
v.berriosfarias
▴ 140
18
votes
13
replies
5.4k
views
How to extract a sequence below a fasta header (">") from a fasta file ?
fasta
bash
updated 3.3 years ago by
ATpoint
82k • written 3.3 years ago by
v.berriosfarias
▴ 140
1
vote
4
replies
2.9k
views
Is it possible to work with paired-end reads for assembly purposes using metaspades?
metaspades
assembly
paired-end reads
3.3 years ago by
v.berriosfarias
▴ 140
3
votes
8
replies
1.6k
views
Tools for hard trimming?
bbmap
trimming
3.0 years ago by
v.berriosfarias
▴ 140
3
votes
6
replies
949
views
bowtie2 giving 0% alignment rato across all samples
bowtie2
alignment
paired-end reads
3.5 years ago by
v.berriosfarias
▴ 140
0
votes
0
replies
592
views
DeepMAsED installation and dependencies
DeepMAsED
bash
tensorflow
scipy
3.5 years ago by
v.berriosfarias
▴ 140
1
vote
6
replies
4.6k
views
bowtie2 using loop on bash with paired-ended reads
alignment
sequence
bowtie2
bash
updated 3.5 years ago by
swbarnes2
14k • written 3.5 years ago by
v.berriosfarias
▴ 140
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