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Comment: Comment: Quantification after transcriptome assembly with Trinity
2.2 years ago by langziv ▴ 70
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Comment: Comment: Quantification after transcriptome assembly with Trinity
2.2 years ago by langziv ▴ 70
1
vote
11
replies
2.4k
views
Quantification after transcriptome assembly with Trinity
De-novo-transcriptome-assembly Trinity RNA-seq-analysis
updated 2.1 years ago by 154k • written 2.2 years ago by ▴ 70
1
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1
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1.7k
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Comment: Comment: Creating a Trinity assembly
2.2 years ago by langziv ▴ 70
1
vote
1
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909
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Quantifying genes' expression with Trinity
De-novo-transcriptome-assembly Trinity RNA-seq-analysis
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by ▴ 70
0
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1
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1.7k
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Comment: Comment: Creating a Trinity assembly
2.2 years ago by langziv ▴ 70
3
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5
replies
1.7k
views
Creating a Trinity assembly
De-novo-transcriptome-assembly Trinity RNA-seq-analysis
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by ▴ 70
4
votes
2
replies
1.1k
views
RNA-seq analysis with contigs instead of an assembled genome
rna-seq
updated 2.2 years ago by ★ 3.1k • written 2.2 years ago by ▴ 70
0
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0
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4.9k
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Comment: Comment: Problems when trying to use ensembl-vep
2.3 years ago by langziv ▴ 70
0
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2
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4.9k
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Comment: Comment: Problems when trying to use ensembl-vep
2.3 years ago by langziv ▴ 70
3
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8
replies
4.9k
views
6 follow
Problems when trying to use ensembl-vep
ensembl ensembl-vep docker
updated 3 months ago by • 0 • written 2.3 years ago by ▴ 70
0
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0
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4.9k
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Comment: Comment: Problems when trying to use ensembl-vep
2.3 years ago by langziv ▴ 70
0
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0
replies
2.5k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
2.4 years ago by langziv ▴ 70
3
votes
12
replies
2.5k
views
Check if blastn gene matches are of entire genes or of parts of genes
blastx blastn bacteria
2.4 years ago by langziv ▴ 70
0
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0
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2.5k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
2.4 years ago by langziv ▴ 70
0
votes
2
replies
2.5k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
2.4 years ago by langziv ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
2.4 years ago by langziv ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Check if blastn gene matches are of entire genes or not
2.4 years ago by langziv ▴ 70
0
votes
0
replies
504
views
Tools for network enrichment analysis in bacteria
network-enrichment-analysis
2.5 years ago by langziv ▴ 70
0
votes
0
replies
655
views
Using RAST's API or as a command line tool‏‏
RAST command-line API
2.7 years ago by langziv ▴ 70
0
votes
1
reply
938
views
Get KEGG's functional annotation by KEGG organism ID and gene name
kegg kegg-api
updated 2.7 years ago by ★ 1.9k • written 2.7 years ago by ▴ 70
0
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2
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1.7k
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Comment: Comment: MAFFT freezes and nothing happens for over 2 hours
2.9 years ago by langziv ▴ 70
2
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3
replies
1.7k
views
MAFFT freezes and nothing happens for over 2 hours
multiple-sequence-alignment maft
2.8 years ago by langziv ▴ 70
2
votes
2
replies
2.1k
views
Running blastn results in "Error: NCBI C++ Exception"
blastn blast command-line
updated 2.9 years ago by 154k • written 2.9 years ago by ▴ 70
3
votes
4
replies
1.7k
views
Command-line blastn results in "Too many positional arguments" error
blastn command-line
updated 2.9 years ago by ▴ 450 • written 2.9 years ago by ▴ 70
0
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1
reply
1.7k
views
Comment: Comment: Command-line blastn results in "Too many positional arguments" error
2.9 years ago by langziv ▴ 70
8
votes
3
replies
3.1k
views
Using a Docker image with ensembl-vep
Linux ensembl-vep Docker
updated 2.9 years ago by ★ 2.5k • written 2.9 years ago by ▴ 70
0
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0
replies
2.7k
views
Comment: Comment: Splitting CRAM files
2.9 years ago by langziv ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: Splitting CRAM files
2.9 years ago by langziv ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: Splitting CRAM files
2.9 years ago by langziv ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: Splitting CRAM files
3.0 years ago by langziv ▴ 70
0
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0
replies
2.7k
views
Comment: Comment: Splitting CRAM files
3.0 years ago by langziv ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: Splitting CRAM files
3.0 years ago by langziv ▴ 70
0
votes
12
replies
2.7k
views
Splitting CRAM files
CRAM-files sequence-alignment
2.9 years ago by langziv ▴ 70
0
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1
reply
1.6k
views
Comment: Comment: Getting information on CRAM files from headers inside the files
3.0 years ago by langziv ▴ 70
0
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1
reply
1.6k
views
Comment: Comment: Getting information on CRAM files from headers inside the files
3.0 years ago by langziv ▴ 70
0
votes
0
replies
2.6k
views
Comment: Comment: mauve alignment results meaning
3.0 years ago by langziv ▴ 70
1
vote
5
replies
1.6k
views
Getting information on CRAM files from headers inside the files
cram-file
updated 3.0 years ago by 154k • written 3.0 years ago by ▴ 70
2
votes
1
reply
812
views
Reference doesn't match the input's build in variant calling pipe line
variant-calling DeepVariant
updated 3.0 years ago by 45k • written 3.0 years ago by ▴ 70
0
votes
0
replies
1.7k
views
Comment: Comment: Getting "ValueError: NOT_FOUND: Could not open" when running the DeepVariant pip
3.0 years ago by langziv ▴ 70
1
vote
3
replies
1.7k
views
Getting "ValueError: NOT_FOUND: Could not open" when running the DeepVariant pipeline
variant-calling DeepVariant docker
updated 3.0 years ago by ▴ 650 • written 3.0 years ago by ▴ 70
1
vote
2
replies
1.3k
views
The meaning of greter than character (>) in gene position in Genbank files
genbank
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 70
0
votes
0
replies
503
views
Getting a negative values when calculating gene expression
RNA-seq EDGE-pro gene-expression
3.8 years ago by langziv ▴ 70
0
votes
0
replies
599
views
Error when trying to use the R package BOG for GSEA and COG
RNA-seq R cluster-of-orthologous-genes bog Gene-Set-Enrichment-Analysis
3.8 years ago by langziv ▴ 70
3
votes
8
replies
3.7k
views
Getting genes' sequences by querying gene symbols/names
gene-sequence gene-id human gene-symbol
updated 3.9 years ago by ▴ 800 • written 4.0 years ago by ▴ 70
0
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1
reply
4.4k
views
Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
3.9 years ago by langziv ▴ 70
0
votes
5
replies
4.4k
views
API for retrieving genes' sequences from genes' symbols in a single call
gene-sequence linux API gene-symbol
updated 3.9 years ago by 36k • written 3.9 years ago by ▴ 70
0
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1
reply
3.7k
views
Comment: Comment: Getting genes' sequences by querying gene symbols/names
3.9 years ago by langziv ▴ 70
0
votes
0
replies
4.4k
views
Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
3.9 years ago by langziv ▴ 70
2
votes
7
replies
4.1k
views
"Input file does not exist" error message when using the Windows version of ensembl-vep with Docker‏‏‏‏
vep emsembl docker ensembl-vep
3.9 years ago by langziv ▴ 70
177 results • Page 2 of 4
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