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Comment: Comment: Creating a Trinity assembly
9 months ago by langziv ▴ 50
1
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1
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472
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Quantifying genes' expression with Trinity
De-novo-transcriptome-assembly Trinity RNA-seq-analysis
updated 9 months ago by ★ 1.1k • written 9 months ago by ▴ 50
0
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1
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826
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Comment: Comment: Creating a Trinity assembly
9 months ago by langziv ▴ 50
3
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5
replies
826
views
Creating a Trinity assembly
De-novo-transcriptome-assembly Trinity RNA-seq-analysis
updated 9 months ago by ★ 1.1k • written 9 months ago by ▴ 50
4
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2
replies
647
views
RNA-seq analysis with contigs instead of an assembled genome
rna-seq
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 50
0
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0
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1.5k
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Comment: Comment: Problems when trying to use ensembl-vep
9 months ago by langziv ▴ 50
0
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1
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1.5k
views
Comment: Comment: Problems when trying to use ensembl-vep
9 months ago by langziv ▴ 50
2
votes
6
replies
1.5k
views
Problems when trying to use ensembl-vep
ensembl ensembl-vep docker
updated 9 months ago by ★ 2.4k • written 9 months ago by ▴ 50
0
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0
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1.5k
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Comment: Comment: Problems when trying to use ensembl-vep
9 months ago by langziv ▴ 50
0
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0
replies
1.3k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
11 months ago by langziv ▴ 50
3
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12
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1.3k
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Check if blastn gene matches are of entire genes or of parts of genes
blastx blastn bacteria
11 months ago by langziv ▴ 50
0
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0
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1.3k
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Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
11 months ago by langziv ▴ 50
0
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2
replies
1.3k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
11 months ago by langziv ▴ 50
0
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1
reply
1.3k
views
Comment: Comment: Check if blastn gene matches are of entire genes or of parts of genes
11 months ago by langziv ▴ 50
0
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1
reply
1.3k
views
Comment: Comment: Check if blastn gene matches are of entire genes or not
11 months ago by langziv ▴ 50
0
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0
replies
291
views
Tools for network enrichment analysis in bacteria
network-enrichment-analysis
12 months ago by langziv ▴ 50
0
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0
replies
416
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Using RAST's API or as a command line tool‏‏
RAST command-line API
14 months ago by langziv ▴ 50
0
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1
reply
566
views
Get KEGG's functional annotation by KEGG organism ID and gene name
kegg kegg-api
updated 14 months ago by ★ 1.8k • written 14 months ago by ▴ 50
0
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2
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937
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Comment: Comment: MAFFT freezes and nothing happens for over 2 hours
16 months ago by langziv ▴ 50
2
votes
3
replies
937
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MAFFT freezes and nothing happens for over 2 hours
multiple-sequence-alignment maft
16 months ago by langziv ▴ 50
2
votes
2
replies
1.3k
views
Running blastn results in "Error: NCBI C++ Exception"
blastn blast command-line
updated 17 months ago by 142k • written 17 months ago by ▴ 50
3
votes
4
replies
859
views
Command-line blastn results in "Too many positional arguments" error
blastn command-line
updated 17 months ago by ▴ 360 • written 17 months ago by ▴ 50
0
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1
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859
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Comment: Comment: Command-line blastn results in "Too many positional arguments" error
17 months ago by langziv ▴ 50
7
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3
replies
1.9k
views
Using a Docker image with ensembl-vep
Linux ensembl-vep Docker
updated 17 months ago by ★ 2.2k • written 17 months ago by ▴ 50
0
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0
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1.8k
views
Comment: Comment: Splitting CRAM files
17 months ago by langziv ▴ 50
0
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1
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1.8k
views
Comment: Comment: Splitting CRAM files
18 months ago by langziv ▴ 50
0
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1
reply
1.8k
views
Comment: Comment: Splitting CRAM files
18 months ago by langziv ▴ 50
0
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1
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1.8k
views
Comment: Comment: Splitting CRAM files
18 months ago by langziv ▴ 50
0
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0
replies
1.8k
views
Comment: Comment: Splitting CRAM files
18 months ago by langziv ▴ 50
0
votes
1
reply
1.8k
views
Comment: Comment: Splitting CRAM files
18 months ago by langziv ▴ 50
0
votes
12
replies
1.8k
views
Splitting CRAM files
CRAM-files sequence-alignment
17 months ago by langziv ▴ 50
0
votes
1
reply
972
views
Comment: Comment: Getting information on CRAM files from headers inside the files
18 months ago by langziv ▴ 50
0
votes
1
reply
972
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Comment: Comment: Getting information on CRAM files from headers inside the files
18 months ago by langziv ▴ 50
0
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0
replies
1.8k
views
Comment: Comment: mauve alignment results meaning
18 months ago by langziv ▴ 50
1
vote
5
replies
972
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Getting information on CRAM files from headers inside the files
cram-file
updated 18 months ago by 142k • written 18 months ago by ▴ 50
2
votes
1
reply
459
views
Reference doesn't match the input's build in variant calling pipe line
variant-calling DeepVariant
updated 18 months ago by 44k • written 18 months ago by ▴ 50
0
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0
replies
1.1k
views
Comment: Comment: Getting "ValueError: NOT_FOUND: Could not open" when running the DeepVariant pip
18 months ago by langziv ▴ 50
1
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3
replies
1.1k
views
Getting "ValueError: NOT_FOUND: Could not open" when running the DeepVariant pipeline
variant-calling DeepVariant docker
updated 18 months ago by ▴ 610 • written 18 months ago by ▴ 50
1
vote
2
replies
662
views
The meaning of greter than character (>) in gene position in Genbank files
genbank
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 50
0
votes
0
replies
317
views
Getting a negative values when calculating gene expression
RNA-seq EDGE-pro gene-expression
2.3 years ago by langziv ▴ 50
0
votes
0
replies
393
views
Error when trying to use the R package BOG for GSEA and COG
RNA-seq R cluster-of-orthologous-genes bog Gene-Set-Enrichment-Analysis
2.3 years ago by langziv ▴ 50
3
votes
8
replies
2.0k
views
Getting genes' sequences by querying gene symbols/names
gene-sequence gene-id human gene-symbol
updated 2.5 years ago by ▴ 720 • written 2.5 years ago by ▴ 50
0
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1
reply
1.7k
views
Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
2.5 years ago by langziv ▴ 50
0
votes
5
replies
1.7k
views
API for retrieving genes' sequences from genes' symbols in a single call
gene-sequence linux API gene-symbol
updated 2.5 years ago by 35k • written 2.5 years ago by ▴ 50
0
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1
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2.0k
views
Comment: Comment: Getting genes' sequences by querying gene symbols/names
2.5 years ago by langziv ▴ 50
0
votes
0
replies
1.7k
views
Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
2.5 years ago by langziv ▴ 50
2
votes
7
replies
3.0k
views
"Input file does not exist" error message when using the Windows version of ensembl-vep with Docker‏‏‏‏
vep emsembl docker ensembl-vep
2.5 years ago by langziv ▴ 50
0
votes
1
reply
3.0k
views
Comment: Comment: "Input file does not exist" error message when using the Windows version of ense
2.5 years ago by langziv ▴ 50
0
votes
1
reply
1.2k
views
Running a Linux command for "Ubuntu on Windows" with WSL from a python script
ensembl-vep windows-subsystem-for-linux wsl python ubuntu
updated 2.5 years ago by • 0 • written 2.5 years ago by ▴ 50
0
votes
0
replies
1.3k
views
Comment: Comment: Error when trying to use Ensembl virtual machine
2.5 years ago by langziv ▴ 50
174 results • Page 2 of 4
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