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160
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Advice on telling if two SNPs are on the same haplotype
ldpair
halplotype
co-occurance
gnomad
snp
5 weeks ago by
amy__
▴ 160
0
votes
0
replies
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
1
reply
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
1
reply
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
1
reply
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
1
reply
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
0
replies
859
views
Comment:
Comment: Help with the new nomenclature of multi-nucleotide variants
6 weeks ago by
amy__
▴ 160
0
votes
13
replies
859
views
Help with the new nomenclature of multi-nucleotide variants
bam
igv
multinucleotide
6 weeks ago by
amy__
▴ 160
0
votes
0
replies
571
views
Comment:
Comment: If the mane transcript isn't available should you use the canonical transcript?
7 weeks ago by
amy__
▴ 160
2
votes
4
replies
571
views
If the mane transcript isn't available should you use the canonical transcript?
ensembl
mane
gnomad
canonical
7 weeks ago by
amy__
▴ 160
0
votes
0
replies
571
views
Comment:
Comment: If the mane transcript isn't available should you use the canonical transcript?
8 weeks ago by
amy__
▴ 160
0
votes
1
reply
274
views
LOFTEE flag on GnomAD - END_TRUNC
loftee
gnomad
updated 10 weeks ago by
Pierre Lindenbaum
161k • written 10 weeks ago by
amy__
▴ 160
0
votes
1
reply
207
views
Extracting LOF variants and incidence from GnomAD for a list of genes
Gnomad
LOF
genes
updated 3 months ago by
LauferVA
4.2k • written 3 months ago by
amy__
▴ 160
1
vote
0
replies
808
views
Comment:
Comment: Genotypes in vcf files
5 months ago by
amy__
▴ 160
0
votes
0
replies
808
views
Comment:
Comment: Genotypes in vcf files
5 months ago by
amy__
▴ 160
0
votes
1
reply
808
views
Comment:
Comment: Genotypes in vcf files
5 months ago by
amy__
▴ 160
2
votes
6
replies
808
views
Genotypes in vcf files
genotypes
vcf
updated 5 months ago by
Jeremy Leipzig
22k • written 5 months ago by
amy__
▴ 160
0
votes
0
replies
305
views
Filtering vcf by strand bias / annotating strand bias on
Vcf
updated 5 months ago by
Ram
43k • written 5 months ago by
amy__
▴ 160
0
votes
1
reply
380
views
How to find the most representative protein data base ID for your protein?
modelling
protein
database
updated 7 months ago by
GenoMax
141k • written 7 months ago by
amy__
▴ 160
2
votes
1
reply
798
views
Answer:
Answer: Why do the same genetic variants sometimes result in different amino acids in th
8 months ago by
amy__
▴ 160
0
votes
1
reply
502
views
Comment:
Comment: Classification for low quality variant on IGV
8 months ago by
amy__
▴ 160
1
vote
3
replies
502
views
Classification for low quality variant on IGV
bam
igv
updated 8 months ago by
dthorbur
★ 1.9k • written 8 months ago by
amy__
▴ 160
0
votes
0
replies
848
views
Comment:
Comment: IGV - is it possible to tell what allele a read is from?
9 months ago by
amy__
▴ 160
6
votes
2
replies
848
views
IGV - is it possible to tell what allele a read is from?
WES
reads
IGV
9 months ago by
amy__
▴ 160
0
votes
0
replies
1.7k
views
Comment:
Comment: Deepvariant variant calling by singularity
9 months ago by
amy__
▴ 160
0
votes
0
replies
612
views
Comment:
Comment: With cutadapt, is it possible to completely trim reads to empty reads instead of
9 months ago by
amy__
▴ 160
0
votes
0
replies
497
views
Comment:
Comment: Low coverage in specific exons of genes - sequencing errors?
9 months ago by
amy__
▴ 160
3
votes
1
reply
1.9k
views
Answer:
Answer: Don't choose Novogene for your sequencing projects
9 months ago by
amy__
▴ 160
1
vote
2
replies
497
views
Low coverage in specific exons of genes - sequencing errors?
coverage
9 months ago by
amy__
▴ 160
0
votes
1
reply
1.7k
views
Comment:
Comment: Deepvariant variant calling by singularity
9 months ago by
amy__
▴ 160
0
votes
1
reply
1.7k
views
Comment:
Comment: Deepvariant variant calling by singularity
9 months ago by
amy__
▴ 160
2
votes
0
replies
1.7k
views
Comment:
Comment: Exome alignment and preprocessing: When I perform an exome alignment, should I u
10 months ago by
amy__
▴ 160
2
votes
1
reply
1.7k
views
Answer:
Answer: Exome alignment and preprocessing: When I perform an exome alignment, should I u
10 months ago by
amy__
▴ 160
0
votes
0
replies
854
views
Comment:
Comment: Difference between USCS exon coordinates and ensembl
10 months ago by
amy__
▴ 160
0
votes
1
reply
854
views
Comment:
Comment: Difference between USCS exon coordinates and ensembl
10 months ago by
amy__
▴ 160
0
votes
4
replies
854
views
Difference between USCS exon coordinates and ensembl
exons
Ensembl
10 months ago by
amy__
▴ 160
0
votes
0
replies
340
views
GC content of WES cohort
WES
FASTQC
GC-content
updated 11 months ago by
Ram
43k • written 11 months ago by
amy__
▴ 160
0
votes
0
replies
1.7k
views
Answer:
Answer: How to calculate the coverage of list of genes in whole exome data
12 months ago by
amy__
▴ 160
1
vote
1
reply
475
views
Variant depth cut off - justification
VCF
depth
variant
updated 12 months ago by
dthorbur
★ 1.9k • written 12 months ago by
amy__
▴ 160
0
votes
1
reply
1.0k
views
Comment:
Comment: Linux command to edit CHROM column in VCF file
14 months ago by
amy__
▴ 160
0
votes
0
replies
677
views
Comment:
Comment: Is it possible to do bedtools multicov across the entire genome?
14 months ago by
amy__
▴ 160
4
votes
3
replies
677
views
Is it possible to do bedtools multicov across the entire genome?
bedtools
updated 10 months ago by
Ram
43k • written 14 months ago by
amy__
▴ 160
0
votes
0
replies
320
views
Haloplex HS - should you remove duplicates?
deduplicate
Haloplex
duplicates
15 months ago by
amy__
▴ 160
0
votes
1
reply
742
views
Comment:
Comment: liftover output column help
15 months ago by
amy__
▴ 160
3
votes
3
replies
742
views
liftover output column help
liftover
updated 15 months ago by
Pierre Lindenbaum
161k • written 15 months ago by
amy__
▴ 160
0
votes
1
reply
1.5k
views
Comment:
Comment: Vep results for a protein
17 months ago by
amy__
▴ 160
0
votes
2
replies
1.5k
views
Answer:
Answer: Vep results for a protein
17 months ago by
amy__
▴ 160
0
votes
1
reply
2.7k
views
Comment:
Comment: Understanding the VCF files
17 months ago by
amy__
▴ 160
0
votes
1
reply
2.7k
views
Comment:
Comment: Understanding the VCF files
17 months ago by
amy__
▴ 160
0
votes
0
replies
288
views
GQ score - what do the numbers mean? How can this be interpreted?
vcf
GQ
18 months ago by
amy__
▴ 160
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