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0
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0
replies
107
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GC content of WES cohort
WES FASTQC GC-content
updated 19 days ago by 39k • written 19 days ago by ▴ 50
0
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0
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759
views
Answer: Answer: How to calculate the coverage of list of genes in whole exome data
5 weeks ago by amy__ ▴ 50
1
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1
reply
217
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Variant depth cut off - justification
VCF depth variant
updated 5 weeks ago by ▴ 450 • written 5 weeks ago by ▴ 50
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1
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413
views
Comment: Comment: Linux command to edit CHROM column in VCF file
3 months ago by amy__ ▴ 50
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0
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343
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Comment: Comment: Is it possible to do bedtools multicov across the entire genome?
3 months ago by amy__ ▴ 50
4
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3
replies
343
views
Is it possible to do bedtools multicov across the entire genome?
bedtools depth hg38
3 months ago by amy__ ▴ 50
0
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0
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152
views
Haloplex HS - should you remove duplicates?
deduplicate Haloplex duplicates
3 months ago by amy__ ▴ 50
0
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1
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403
views
Comment: Comment: liftover output column help
4 months ago by amy__ ▴ 50
3
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3
replies
403
views
liftover output column help
liftover
updated 4 months ago by 154k • written 4 months ago by ▴ 50
0
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1
reply
962
views
Comment: Comment: Vep results for a protein
6 months ago by amy__ ▴ 50
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2
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962
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Answer: Answer: Vep results for a protein
6 months ago by amy__ ▴ 50
0
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1
reply
1.1k
views
Comment: Comment: Understanding the VCF files
6 months ago by amy__ ▴ 50
0
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1
reply
1.1k
views
Comment: Comment: Understanding the VCF files
6 months ago by amy__ ▴ 50
0
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0
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158
views
GQ score - what do the numbers mean? How can this be interpreted?
vcf GQ
6 months ago by amy__ ▴ 50
0
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0
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1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
6 months ago by amy__ ▴ 50
0
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1
reply
325
views
Comment: Comment: Add absolute colours to heat map depending on range
7 months ago by amy__ ▴ 50
0
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3
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325
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Add absolute colours to heat map depending on range
heatmap pheatmap
updated 7 months ago by 3.7k • written 7 months ago by ▴ 50
2
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1
reply
497
views
Answer: Answer: Best practices and programs tu run a WGS genetic analysis
7 months ago by amy__ ▴ 50
0
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0
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790
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Comment: Comment: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
8 months ago by amy__ ▴ 50
0
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0
replies
790
views
Comment: Comment: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
8 months ago by amy__ ▴ 50
2
votes
3
replies
790
views
bcftools split-vep -- how to split the INFO column up and also assign the ensembl vep headers
split-up bcftools ensembl-vep
8 months ago by amy__ ▴ 50
0
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0
replies
3.0k
views
Comment: Comment: How to extract all columns of CSQ using split-vep plugin of bcftools?
8 months ago by amy__ ▴ 50
0
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1
reply
770
views
Comment: Comment: Missing reads in fastp
9 months ago by amy__ ▴ 50
0
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1
reply
447
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Answer: Answer: Getting BED file
9 months ago by amy__ ▴ 50
0
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1
reply
770
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Comment: Comment: Missing reads in fastp
9 months ago by amy__ ▴ 50
0
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6
replies
770
views
Missing reads in fastp
fastp filtering trimming
updated 9 months ago by 98k • written 9 months ago by ▴ 50
0
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0
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1.7k
views
Comment: Comment: Which hg38 file?
10 months ago by amy__ ▴ 50
0
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1
reply
1.7k
views
Comment: Comment: Which hg38 file?
10 months ago by amy__ ▴ 50
0
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1
reply
1.7k
views
Comment: Comment: Which hg38 file?
10 months ago by amy__ ▴ 50
0
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0
replies
1.7k
views
Comment: Comment: Which hg38 file?
10 months ago by amy__ ▴ 50
9
votes
9
replies
1.7k
views
Which hg38 file?
reference hg38 NCBI
updated 9 months ago by ▴ 80 • written 10 months ago by ▴ 50
0
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1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
0
replies
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
15
replies
1.4k
views
Chromosome accession numbers correspond to which chromosome?
bam chromosome bed
6 months ago by amy__ ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: Chromosome accession numbers correspond to which chromosome?
10 months ago by amy__ ▴ 50
0
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0
replies
1.0k
views
Comment: Comment: fastp ERROR: igzip: encountered while decompressing file:
10 months ago by amy__ ▴ 50
1
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2
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1.0k
views
fastp ERROR: igzip: encountered while decompressing file:
fastp igzip trimming
updated 10 months ago by 129k • written 10 months ago by ▴ 50
0
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1
reply
1.2k
views
Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
11 months ago by amy__ ▴ 50
0
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1
reply
1.2k
views
Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
11 months ago by amy__ ▴ 50
3
votes
5
replies
1.2k
views
qualimap - bed file error - BED format error, there should be at least 6 fields.
qualimap
updated 11 months ago by 35k • written 11 months ago by ▴ 50
0
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1
reply
705
views
Comment: Comment: bedcov output meaning
11 months ago by amy__ ▴ 50
2
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3
replies
705
views
bedcov output meaning
coverage read bedcov
updated 11 months ago by 154k • written 11 months ago by ▴ 50
0
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0
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1.0k
views
Comment: Comment: How to work out coverage (100X) of WES using exome bed file?
12 months ago by amy__ ▴ 50
0
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1
reply
1.0k
views
Comment: Comment: How to work out coverage (100X) of WES using exome bed file?
12 months ago by amy__ ▴ 50
0
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0
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483
views
Answer: Answer: FASTA sequence retrieval
12 months ago by amy__ ▴ 50
0
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0
replies
842
views
Comment: Comment: Do you need to define adapter sequences for trimming and QC tools?
12 months ago by amy__ ▴ 50
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