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Advice on telling if two SNPs are on the same haplotype
ldpair halplotype co-occurance gnomad snp
9 weeks ago by amy__ ▴ 160
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
9 weeks ago by amy__ ▴ 160
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
9 weeks ago by amy__ ▴ 160
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
9 weeks ago by amy__ ▴ 160
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
9 weeks ago by amy__ ▴ 160
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1
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
10 weeks ago by amy__ ▴ 160
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924
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
10 weeks ago by amy__ ▴ 160
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13
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924
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Help with the new nomenclature of multi-nucleotide variants
bam igv multinucleotide
9 weeks ago by amy__ ▴ 160
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623
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Comment: Comment: If the mane transcript isn't available should you use the canonical transcript?
10 weeks ago by amy__ ▴ 160
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4
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623
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If the mane transcript isn't available should you use the canonical transcript?
ensembl mane gnomad canonical
10 weeks ago by amy__ ▴ 160
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623
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Comment: Comment: If the mane transcript isn't available should you use the canonical transcript?
11 weeks ago by amy__ ▴ 160
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1
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301
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LOFTEE flag on GnomAD - END_TRUNC
loftee gnomad
updated 3 months ago by 161k • written 3 months ago by ▴ 160
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1
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229
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Extracting LOF variants and incidence from GnomAD for a list of genes
Gnomad LOF genes
updated 4 months ago by 4.2k • written 4 months ago by ▴ 160
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0
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859
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Comment: Comment: Genotypes in vcf files
5 months ago by amy__ ▴ 160
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859
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Comment: Comment: Genotypes in vcf files
5 months ago by amy__ ▴ 160
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1
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859
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Comment: Comment: Genotypes in vcf files
5 months ago by amy__ ▴ 160
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6
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859
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Genotypes in vcf files
genotypes vcf
updated 5 months ago by 22k • written 5 months ago by ▴ 160
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318
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Filtering vcf by strand bias / annotating strand bias on
Vcf
updated 6 months ago by 43k • written 6 months ago by ▴ 160
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1
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392
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How to find the most representative protein data base ID for your protein?
modelling protein database
updated 7 months ago by 142k • written 7 months ago by ▴ 160
2
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1
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821
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Answer: Answer: Why do the same genetic variants sometimes result in different amino acids in th
9 months ago by amy__ ▴ 160
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1
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527
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Comment: Comment: Classification for low quality variant on IGV
9 months ago by amy__ ▴ 160
1
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3
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527
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Classification for low quality variant on IGV
bam igv
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 160
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890
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Comment: Comment: IGV - is it possible to tell what allele a read is from?
9 months ago by amy__ ▴ 160
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2
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890
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IGV - is it possible to tell what allele a read is from?
WES reads IGV
9 months ago by amy__ ▴ 160
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0
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1.8k
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Comment: Comment: Deepvariant variant calling by singularity
10 months ago by amy__ ▴ 160
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649
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Comment: Comment: With cutadapt, is it possible to completely trim reads to empty reads instead of
10 months ago by amy__ ▴ 160
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513
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Comment: Comment: Low coverage in specific exons of genes - sequencing errors?
10 months ago by amy__ ▴ 160
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1
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2.0k
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Answer: Answer: Don't choose Novogene for your sequencing projects
10 months ago by amy__ ▴ 160
1
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2
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513
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Low coverage in specific exons of genes - sequencing errors?
coverage
10 months ago by amy__ ▴ 160
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1
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1.8k
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Comment: Comment: Deepvariant variant calling by singularity
10 months ago by amy__ ▴ 160
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1
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1.8k
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Comment: Comment: Deepvariant variant calling by singularity
10 months ago by amy__ ▴ 160
2
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0
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1.8k
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Comment: Comment: Exome alignment and preprocessing: When I perform an exome alignment, should I u
11 months ago by amy__ ▴ 160
2
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1
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1.8k
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Answer: Answer: Exome alignment and preprocessing: When I perform an exome alignment, should I u
11 months ago by amy__ ▴ 160
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0
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873
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Comment: Comment: Difference between USCS exon coordinates and ensembl
11 months ago by amy__ ▴ 160
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1
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873
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Comment: Comment: Difference between USCS exon coordinates and ensembl
11 months ago by amy__ ▴ 160
0
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4
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873
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Difference between USCS exon coordinates and ensembl
exons Ensembl
11 months ago by amy__ ▴ 160
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0
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353
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GC content of WES cohort
WES FASTQC GC-content
updated 12 months ago by 43k • written 12 months ago by ▴ 160
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1.8k
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Answer: Answer: How to calculate the coverage of list of genes in whole exome data
13 months ago by amy__ ▴ 160
1
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1
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485
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Variant depth cut off - justification
VCF depth variant
updated 13 months ago by ★ 2.0k • written 13 months ago by ▴ 160
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1
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1.1k
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Comment: Comment: Linux command to edit CHROM column in VCF file
15 months ago by amy__ ▴ 160
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0
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696
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Comment: Comment: Is it possible to do bedtools multicov across the entire genome?
15 months ago by amy__ ▴ 160
4
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3
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696
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Is it possible to do bedtools multicov across the entire genome?
bedtools
updated 11 months ago by 43k • written 15 months ago by ▴ 160
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0
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326
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Haloplex HS - should you remove duplicates?
deduplicate Haloplex duplicates
15 months ago by amy__ ▴ 160
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1
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758
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Comment: Comment: liftover output column help
16 months ago by amy__ ▴ 160
3
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3
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758
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liftover output column help
liftover
updated 16 months ago by 161k • written 16 months ago by ▴ 160
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1
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1.6k
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Comment: Comment: Vep results for a protein
18 months ago by amy__ ▴ 160
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2
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1.6k
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Answer: Answer: Vep results for a protein
18 months ago by amy__ ▴ 160
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1
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2.8k
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Comment: Comment: Understanding the VCF files
18 months ago by amy__ ▴ 160
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1
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2.8k
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Comment: Comment: Understanding the VCF files
18 months ago by amy__ ▴ 160
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0
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294
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GQ score - what do the numbers mean? How can this be interpreted?
vcf GQ
18 months ago by amy__ ▴ 160
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