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Using Bowtie for hsa-miRNA Reads: Should I Restrict Reverse-Complement Mapping?
hsa-miR miRNA Bowtie mapping
3 months ago by MH85 ▴ 10
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587
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Comment: Comment: miRNAseq - over-presented sequence in negative control
7 months ago by MH85 ▴ 10
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2
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587
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miRNAseq - over-presented sequence in negative control
miRNAseq adaptor dimer
7 months ago by MH85 ▴ 10
0
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1
reply
440
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Bowtie - multiple alignments and seed length vs read length in miRNA mapping
miRNA hsa-miR Bowtie
updated 9 months ago by 43k • written 9 months ago by ▴ 10
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0
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288
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AD sum about half of DP in vcf file
vcf SNP read-depth Allelic-depth
updated 9 months ago by 43k • written 9 months ago by ▴ 10
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0
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319
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PheWAS - risk/effect allele
GWAS PheWAS Open_Targets_Genetics
11 months ago by MH85 ▴ 10
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0
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372
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Minimal insert size for Illumina MiniSeq
insert-size MiniSeq amplicon Illumina
updated 22 months ago by 43k • written 22 months ago by ▴ 10
1
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1
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426
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Libraries with different size in the same MiniSeq cartridge
Illumina MiniSeq UMI
updated 13 months ago by 43k • written 2.0 years ago by ▴ 10
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0
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379
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fgbio read structure
fgbio UMI ExtractUmisFromBam
2.3 years ago by MH85 ▴ 10
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0
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431
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Simulate offspring's genotype from parental genotypes (SNPs)
SNPs Simulation Pedigree Parentage
2.5 years ago by MH85 ▴ 10
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0
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639
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Comment: Comment: Sample reads across mapping
2.8 years ago by MH85 ▴ 10
2
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2
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639
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Sample reads across mapping
bam2fasta mapping extract_reads
2.8 years ago by MH85 ▴ 10
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669
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Comment: Comment: Supernova 10X Genomics - estimation of gap length
2.8 years ago by MH85 ▴ 10
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1
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669
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Supernova 10X Genomics - estimation of gap length
gap_length_estimation 10X_Genomics genome_assembly Supernova_assembler
2.8 years ago by MH85 ▴ 10
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1
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1.6k
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Comment: Comment: genome assembly - size of gaps
2.9 years ago by MH85 ▴ 10
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1
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1.6k
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Comment: Comment: genome assembly - size of gaps
2.9 years ago by MH85 ▴ 10
3
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6
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1.6k
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genome assembly - size of gaps
PBJelly assembly_genome linked_reads gaps
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 10
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0
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625
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Comment: C: Maker Annotation - multiple gene models give same blastp match
3.2 years ago by MH85 ▴ 10
2
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2
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625
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Maker Annotation - multiple gene models give same blastp match
genome annotation Maker
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 10
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