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32
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34
replies
19k
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How To Randomly Sample A Subset Of Lines From A Bed File
bed chip-seq
updated 4.0 years ago by 45k • written 12.0 years ago by ▴ 540
1
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1
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3.3k
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Answer: A: Are HOMER aggregate proflles normalized to the read depth of each ChIP-seq sampl
updated 5.8 years ago by 45k • written 9.7 years ago by ▴ 540
0
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1
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2.6k
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Comment: C: Plot of intergenomic distances between all bound TF sites?
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 540
0
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1
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18k
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
updated 6.1 years ago by 45k • written 11.7 years ago by ▴ 540
14
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8
replies
18k
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Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sam sra chip-seq samtools
updated 7.7 years ago by 20 • written 11.7 years ago by ▴ 540
4
votes
4
replies
2.6k
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Plot of intergenomic distances between all bound TF sites?
ChIP-Seq peaks
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 540
0
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0
replies
2.8k
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Comment: Comment: why only small fraction of reads from control sample of chip-seq are mapping int
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 540
4
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0
replies
9.2k
views
Answer: Answer: what is the motivation behind Pol2 chip-seq data?
updated 3.5 years ago by 45k • written 10.6 years ago by ▴ 540
1
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0
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2.5k
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Answer: Answer: Clearly formed IgG Peaks in CLIP-Seq
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 540
0
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1
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3.5k
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Answer: Answer: Query related to generating plots from HOMER output
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 540
2
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0
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2.7k
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Answer: Answer: upscaling ChIP-seq data
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 540
0
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0
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3.0k
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Comment: C: How to avoid problem using -size, -hist and -ghist for annotatePeaks.pl in HOMER
11.0 years ago by bede.portz ▴ 540
2
votes
1
reply
2.4k
views
How to transform Peakzilla output to one that can be displayed in the UCSC Browser
UCSC calling peakzilla ChIP-Seq browser peak
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 540
0
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1
reply
7.8k
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Comment: Comment: chip-seq low signal vs background
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 540
1
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1
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7.8k
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Answer: Answer: chip-seq low signal vs background
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 540
6
votes
4
replies
10k
views
How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Instances Of The Motif?
motif chip-seq
updated 11.5 years ago by ★ 4.7k • written 11.8 years ago by ▴ 540
0
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0
replies
6.4k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
11.6 years ago by bede.portz ▴ 540
0
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0
replies
18k
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
11.7 years ago by bede.portz ▴ 540
0
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0
replies
4.3k
views
Comment: C: Double Peaks For Both Forward And Reverse Tags In Macs2 Model Of Chip-Seq Data -
11.8 years ago by bede.portz ▴ 540
2
votes
0
replies
11k
views
Answer: A: Chip Seq Data Analysis
11.8 years ago by bede.portz ▴ 540
2
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0
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7.6k
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Comment: C: Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal Wit
11.8 years ago by bede.portz ▴ 540
4
votes
0
replies
4.4k
views
Answer: A: Aligning Chip-Seq Reads To Custom Tss Files Using Homer
11.9 years ago by bede.portz ▴ 540
4
votes
1
reply
4.4k
views
Aligning Chip-Seq Reads To Custom Tss Files Using Homer
chip-seq clustering
11.9 years ago by bede.portz ▴ 540
1
vote
0
replies
5.9k
views
Answer: A: Number Of Transcription Factor Binding Sites In The Promoter Of A Gene
11.9 years ago by bede.portz ▴ 540
0
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0
replies
4.5k
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Comment: C: When Normalizing Chip-Seq Replicates, Is It Better To Normalize All Reads, Or On
12.0 years ago by bede.portz ▴ 540
0
votes
0
replies
4.5k
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Answer: A: Occurrence Of "Dead" Bioinformatics Servers/Tools
12.0 years ago by bede.portz ▴ 540
0
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1
reply
4.3k
views
Comment: C: Viewing Chip-Chip Data Within A Genome Browser
12.0 years ago by bede.portz ▴ 540
2
votes
2
replies
4.5k
views
When Normalizing Chip-Seq Replicates, Is It Better To Normalize All Reads, Or Only Reads In A Window Of Interst?
chip-seq rna-seq normalization
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 540
4
votes
1
reply
3.8k
views
Answer: A: What Are Good Phd Programs In The Us Oriented Towards Algorithm Development?
12.0 years ago by bede.portz ▴ 540
0
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0
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9.4k
views
Comment: C: Why Are Transcription Termination Sites (Tts) Included In The Results Of A Trans
12.0 years ago by bede.portz ▴ 540
8
votes
3
replies
9.4k
views
Why Are Transcription Termination Sites (Tts) Included In The Results Of A Transcription Start Site (Tss) Query From Ucsc?
chip-seq
updated 12.0 years ago by 103k • written 12.0 years ago by ▴ 540
0
votes
1
reply
6.2k
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Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
0
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1
reply
6.2k
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Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
0
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1
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6.2k
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Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
0
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1
reply
6.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
1
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0
replies
7.6k
views
Answer: A: In The Various Dna Sequencing Methods What Restricts The Process From Sequencing
12.0 years ago by bede.portz ▴ 540
0
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1
reply
6.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
3
votes
15
replies
6.2k
views
Filtering Tss List To Remove Tss Within X #Bp From One Another
chip-seq rna-seq
updated 12.0 years ago by 36k • written 12.0 years ago by ▴ 540
0
votes
0
replies
6.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
12.0 years ago by bede.portz ▴ 540
1
vote
0
replies
19k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
12.0 years ago by bede.portz ▴ 540
1
vote
1
reply
19k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
12.0 years ago by bede.portz ▴ 540
0
votes
1
reply
19k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
12.0 years ago by bede.portz ▴ 540
0
votes
0
replies
19k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
12.0 years ago by bede.portz ▴ 540
0
votes
0
replies
16k
views
Answer: A: Plotting Reads Around Tss
12.0 years ago by bede.portz ▴ 540
0
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1
reply
3.3k
views
Comment: C: Does Windowbed Extend Reads?
12.0 years ago by bede.portz ▴ 540
0
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1
reply
3.3k
views
Comment: C: Does Windowbed Extend Reads?
12.0 years ago by bede.portz ▴ 540
7
votes
5
replies
3.3k
views
Does Windowbed Extend Reads?
bedtools chip-seq
updated 12.0 years ago by 105k • written 12.0 years ago by ▴ 540
8
votes
0
replies
5.5k
views
Answer: A: Improved Peer Review Of Rna-Seq Bioinformatics In Science Publications
12.1 years ago by bede.portz ▴ 540
1
vote
1
reply
4.0k
views
Answer: A: Tool For Binning Windowbed Output For K-Means Clustering
updated 12.1 years ago by 103k • written 12.1 years ago by ▴ 540
5
votes
7
replies
4.0k
views
Tool For Binning Windowbed Output For K-Means Clustering
bedtools chip-seq clustering heatmap
12.1 years ago by bede.portz ▴ 540
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