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comments
2
votes
2
replies
240
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 14 days ago by
dsull
★ 5.8k • written 15 days ago by
ev97
▴ 20
0
votes
0
replies
626
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
5 weeks ago by
ev97
▴ 20
0
votes
1
reply
626
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
5 weeks ago by
ev97
▴ 20
0
votes
1
reply
626
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
5 weeks ago by
ev97
▴ 20
2
votes
7
replies
626
views
Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq
contamination
updated 5 weeks ago by
Chris Dean
▴ 390 • written 5 weeks ago by
ev97
▴ 20
1
vote
0
replies
555
views
Comment:
Comment: 1 Bioinformatician position in San Sebastian (Spain)
8 weeks ago by
ev97
▴ 20
1
vote
3
replies
555
views
Job:
1 Bioinformatician position in San Sebastian (Spain)
postdoc
phd
proteomics
scRNAseq
transcriptomics
8 weeks ago by
ev97
▴ 20
0
votes
0
replies
394
views
Comment:
Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
12 weeks ago by
ev97
▴ 20
0
votes
1
reply
394
views
Comment:
Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
12 weeks ago by
ev97
▴ 20
2
votes
5
replies
394
views
Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA
PoliA
DGE
RNAseq
DESeq2
updated 12 weeks ago by
i.sudbery
19k • written 12 weeks ago by
ev97
▴ 20
0
votes
1
reply
361
views
Comment:
Comment: What do you usually use for QC using DNBseq?
3 months ago by
ev97
▴ 20
1
vote
3
replies
361
views
What do you usually use for QC using DNBseq?
DNBseq
fastqc
qc
Illumina
RNA-seq
updated 3 months ago by
GenoMax
141k • written 3 months ago by
ev97
▴ 20
0
votes
0
replies
447
views
Job:
PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics
PhD
RNA-seq
Single-Cell
updated 4 months ago by
Ram
43k • written 4 months ago by
ev97
▴ 20
0
votes
0
replies
230
views
Having different % aligned reads in RPF and mRNA for TE analysis
RPF
Ribo-Seq
Translation
TE
RNA-seq
4 months ago by
ev97
▴ 20
0
votes
0
replies
1.3k
views
Comment:
Comment: DNBseq vs Illumina
8 months ago by
ev97
▴ 20
6
votes
5
replies
1.3k
views
DNBseq vs Illumina
DNBseq
fastq
sequencing
Illumina
RNA-seq
8 months ago by
ev97
▴ 20
0
votes
0
replies
1.3k
views
Comment:
Comment: DNBseq vs Illumina
8 months ago by
ev97
▴ 20
2
votes
2
replies
556
views
Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM
SAM
RNA-seq
STAR
updated 9 months ago by
GenoMax
141k • written 9 months ago by
ev97
▴ 20
0
votes
1
reply
503
views
Comment:
Comment: How to check if the total million of reads that I have are the ones that I bough
9 months ago by
ev97
▴ 20
2
votes
3
replies
503
views
How to check if the total million of reads that I have are the ones that I bought?
fastq
RNA-seq
updated 9 months ago by
Ram
43k • written 9 months ago by
ev97
▴ 20
0
votes
1
reply
955
views
Comment:
Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
10 months ago by
ev97
▴ 20
2
votes
3
replies
955
views
Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit
fastq
RNA-seq
SRA
updated 10 months ago by
GenoMax
141k • written 10 months ago by
ev97
▴ 20
0
votes
0
replies
2.2k
views
Comment:
Comment: Negative values after batch correction using removeBatchEffect from Limma
20 months ago by
ev97
▴ 20
0
votes
0
replies
355
views
Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq
combat-seq
batch
removeBatchEffect
limma
20 months ago by
ev97
▴ 20
0
votes
0
replies
445
views
How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq
combat-seq
batch
removeBatchEffect
limma
20 months ago by
ev97
▴ 20
2
votes
4
replies
2.2k
views
Negative values after batch correction using removeBatchEffect from Limma
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 1 day ago by
Ram
43k • written 20 months ago by
ev97
▴ 20
0
votes
0
replies
801
views
Comment:
Comment: What type of normalization does removeBatchEffect function require as the input?
20 months ago by
ev97
▴ 20
1
vote
2
replies
801
views
What type of normalization does removeBatchEffect function require as the input?
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 1 day ago by
Ram
43k • written 20 months ago by
ev97
▴ 20
7
votes
4
replies
1.4k
views
Is there any journal article to reference removeBatchEffect function from Limma?
batch
removebatcheffect
limma
rna-seq
batch-effect
updated 1 day ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
0
votes
0
replies
1.4k
views
Comment:
Comment: Is there any journal article to reference removeBatchEffect function from Limma?
21 months ago by
ev97
▴ 20
0
votes
1
reply
2.4k
views
Comment:
Comment: How to adjust by multiple variables using ComBat-Seq?
21 months ago by
ev97
▴ 20
0
votes
1
reply
2.4k
views
Comment:
Comment: How to adjust by multiple variables using ComBat-Seq?
21 months ago by
ev97
▴ 20
3
votes
6
replies
2.4k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 1 day ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
0
votes
0
replies
404
views
How Combat-Seq handles the biological covariables?
combat
CombatSeq
sva
rnaseq
2.2 years ago by
ev97
▴ 20
0
votes
0
replies
3.4k
views
Comment:
Comment: Is there a manual to understand STAR output files?
2.9 years ago by
ev97
▴ 20
0
votes
0
replies
3.4k
views
Comment:
Comment: Is there a manual to understand STAR output files?
2.9 years ago by
ev97
▴ 20
2
votes
4
replies
3.4k
views
Is there a manual to understand STAR output files?
STAR
RNAseq
alignment
2.9 years ago by
ev97
▴ 20
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