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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
11 months ago by ev97 ▴ 40
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1.5k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
11 months ago by ev97 ▴ 40
0
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1.5k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
11 months ago by ev97 ▴ 40
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2
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1.5k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
11 months ago by ev97 ▴ 40
9
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10
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1.5k
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How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen rRNA DESeq2 RNAseq DGE
updated 11 months ago by 9.0k • written 11 months ago by ▴ 40
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5.5k
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Answer: Answer: Remove column from Seurat metadata
13 months ago by ev97 ▴ 40
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536
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Should I focus on genes with MGI symbols when they have several Ensembl/Entrez IDs?
biomart entrez mgi Ensembl ncbi
14 months ago by ev97 ▴ 40
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2.3k
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Comment: Comment: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
15 months ago by ev97 ▴ 40
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2
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2.3k
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Should I normalize and scale my data again after doing subset(seu, idents=" ") in Seurat?
normalization seurat scRNA-seq
15 months ago by ev97 ▴ 40
2
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3
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2.5k
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Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat scRNA-seq single-cell dotplot
updated 15 months ago by 45k • written 15 months ago by ▴ 40
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2.5k
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Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
15 months ago by ev97 ▴ 40
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0
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2.5k
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Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
15 months ago by ev97 ▴ 40
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0
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939
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Comment: Comment: Is there any minimum number of counts in scRNAseq to consider that a gene is exp
15 months ago by ev97 ▴ 40
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2
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939
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Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scRNAseq single-cell seurat scanpy UMI
15 months ago by ev97 ▴ 40
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0
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560
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Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat single-cell scRNA-seq
updated 16 months ago by 45k • written 16 months ago by ▴ 40
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1.7k
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
16 months ago by ev97 ▴ 40
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1
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1.7k
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
16 months ago by ev97 ▴ 40
2
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4
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1.7k
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Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10XGenomics scRNAseq
updated 16 months ago by ▴ 820 • written 16 months ago by ▴ 40
2
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2
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750
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Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt RNAseq
updated 17 months ago by ★ 7.7k • written 17 months ago by ▴ 40
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0
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1.8k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
18 months ago by ev97 ▴ 40
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1
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1.8k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
18 months ago by ev97 ▴ 40
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1
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1.8k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
18 months ago by ev97 ▴ 40
2
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7
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1.8k
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Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq contamination
updated 18 months ago by ▴ 420 • written 18 months ago by ▴ 40
1
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1.4k
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
19 months ago by ev97 ▴ 40
1
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3
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1.4k
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Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scRNAseq transcriptomics
19 months ago by ev97 ▴ 40
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0
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1.4k
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
20 months ago by ev97 ▴ 40
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1
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1.4k
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
20 months ago by ev97 ▴ 40
2
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5
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1.4k
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Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA PoliA DGE RNAseq DESeq2
updated 20 months ago by 22k • written 20 months ago by ▴ 40
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1
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862
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Comment: Comment: What do you usually use for QC using DNBseq?
20 months ago by ev97 ▴ 40
1
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3
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862
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What do you usually use for QC using DNBseq?
DNBseq fastqc qc Illumina RNA-seq
updated 20 months ago by 153k • written 20 months ago by ▴ 40
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0
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829
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Job: PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics PhD RNA-seq Single-Cell
updated 21 months ago by 45k • written 21 months ago by ▴ 40
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0
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490
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Having different % aligned reads in RPF and mRNA for TE analysis
RPF Ribo-Seq Translation TE RNA-seq
21 months ago by ev97 ▴ 40
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0
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2.8k
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Comment: Comment: DNBseq vs Illumina
2.1 years ago by ev97 ▴ 40
6
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5
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2.8k
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DNBseq vs Illumina
DNBseq fastq sequencing Illumina RNA-seq
2.1 years ago by ev97 ▴ 40
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0
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2.8k
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Comment: Comment: DNBseq vs Illumina
2.1 years ago by ev97 ▴ 40
2
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2
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1.0k
views
Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM SAM RNA-seq STAR
updated 2.2 years ago by 153k • written 2.2 years ago by ▴ 40
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1
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1.1k
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Comment: Comment: How to check if the total million of reads that I have are the ones that I bough
2.2 years ago by ev97 ▴ 40
2
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3
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1.1k
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How to check if the total million of reads that I have are the ones that I bought?
fastq RNA-seq
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 40
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1
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1.8k
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Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
2.3 years ago by ev97 ▴ 40
2
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3
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1.8k
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Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit fastq RNA-seq SRA
updated 2.3 years ago by 153k • written 2.3 years ago by ▴ 40
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0
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3.8k
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Comment: Comment: Negative values after batch correction using removeBatchEffect from Limma
3.1 years ago by ev97 ▴ 40
0
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0
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577
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Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq combat-seq batch removeBatchEffect limma
3.1 years ago by ev97 ▴ 40
0
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0
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786
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How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq combat-seq batch removeBatchEffect limma
3.1 years ago by ev97 ▴ 40
2
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4
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3.8k
views
Negative values after batch correction using removeBatchEffect from Limma
batch limma removeBatchEffect rna-seq batch-effect
updated 17 months ago by 45k • written 3.1 years ago by ▴ 40
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0
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1.3k
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
3.1 years ago by ev97 ▴ 40
1
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2
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1.3k
views
What type of normalization does removeBatchEffect function require as the input?
batch limma removeBatchEffect rna-seq batch-effect
updated 17 months ago by 45k • written 3.1 years ago by ▴ 40
7
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4
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2.3k
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Is there any journal article to reference removeBatchEffect function from Limma?
batch removebatcheffect limma rna-seq batch-effect
updated 17 months ago by 45k • written 3.2 years ago by ▴ 40
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0
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2.3k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
3.2 years ago by ev97 ▴ 40
0
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1
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4.1k
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Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
3.2 years ago by ev97 ▴ 40
0
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1
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4.1k
views
Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
3.2 years ago by ev97 ▴ 40
55 results • Page 1 of 2
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