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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by ev97 ▴ 40
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1.7k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by ev97 ▴ 40
0
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1
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1.7k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by ev97 ▴ 40
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2
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1.7k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by ev97 ▴ 40
9
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10
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1.7k
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How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen rRNA DESeq2 RNAseq DGE
updated 12 months ago by 9.0k • written 12 months ago by ▴ 40
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5.8k
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Answer: Answer: Remove column from Seurat metadata
15 months ago by ev97 ▴ 40
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0
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597
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Should I focus on genes with MGI symbols when they have several Ensembl/Entrez IDs?
biomart entrez mgi Ensembl ncbi
15 months ago by ev97 ▴ 40
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2.5k
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Comment: Comment: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
16 months ago by ev97 ▴ 40
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2
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2.5k
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Should I normalize and scale my data again after doing subset(seu, idents=" ") in Seurat?
normalization seurat scRNA-seq
16 months ago by ev97 ▴ 40
2
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3
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2.8k
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Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat scRNA-seq single-cell dotplot
updated 17 months ago by 45k • written 17 months ago by ▴ 40
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2.8k
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Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
17 months ago by ev97 ▴ 40
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0
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2.8k
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Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
17 months ago by ev97 ▴ 40
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0
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1.0k
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Comment: Comment: Is there any minimum number of counts in scRNAseq to consider that a gene is exp
17 months ago by ev97 ▴ 40
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2
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1.0k
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Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scRNAseq single-cell seurat scanpy UMI
17 months ago by ev97 ▴ 40
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0
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640
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Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat single-cell scRNA-seq
updated 17 months ago by 45k • written 17 months ago by ▴ 40
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1.8k
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
17 months ago by ev97 ▴ 40
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1
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1.8k
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
17 months ago by ev97 ▴ 40
2
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4
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1.8k
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Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10XGenomics scRNAseq
updated 17 months ago by ▴ 870 • written 17 months ago by ▴ 40
2
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2
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858
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Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt RNAseq
updated 19 months ago by ★ 7.8k • written 19 months ago by ▴ 40
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0
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1.9k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
20 months ago by ev97 ▴ 40
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1
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1.9k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
20 months ago by ev97 ▴ 40
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1
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1.9k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
20 months ago by ev97 ▴ 40
2
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7
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1.9k
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Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq contamination
updated 20 months ago by ▴ 420 • written 20 months ago by ▴ 40
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1.5k
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
20 months ago by ev97 ▴ 40
1
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3
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1.5k
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Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scRNAseq transcriptomics
20 months ago by ev97 ▴ 40
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0
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1.5k
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
21 months ago by ev97 ▴ 40
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1
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1.5k
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
21 months ago by ev97 ▴ 40
2
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5
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1.5k
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Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA PoliA DGE RNAseq DESeq2
updated 21 months ago by 22k • written 21 months ago by ▴ 40
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1
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938
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Comment: Comment: What do you usually use for QC using DNBseq?
22 months ago by ev97 ▴ 40
1
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3
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938
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What do you usually use for QC using DNBseq?
DNBseq fastqc qc Illumina RNA-seq
updated 22 months ago by 154k • written 22 months ago by ▴ 40
0
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0
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901
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Job: PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics PhD RNA-seq Single-Cell
updated 23 months ago by 45k • written 23 months ago by ▴ 40
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0
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587
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Having different % aligned reads in RPF and mRNA for TE analysis
RPF Ribo-Seq Translation TE RNA-seq
23 months ago by ev97 ▴ 40
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0
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3.0k
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Comment: Comment: DNBseq vs Illumina
2.3 years ago by ev97 ▴ 40
6
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5
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3.0k
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DNBseq vs Illumina
DNBseq fastq sequencing Illumina RNA-seq
2.3 years ago by ev97 ▴ 40
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0
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3.0k
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Comment: Comment: DNBseq vs Illumina
2.3 years ago by ev97 ▴ 40
2
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2
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1.1k
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Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM SAM RNA-seq STAR
updated 2.3 years ago by 154k • written 2.3 years ago by ▴ 40
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1
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1.2k
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Comment: Comment: How to check if the total million of reads that I have are the ones that I bough
2.3 years ago by ev97 ▴ 40
2
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3
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1.2k
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How to check if the total million of reads that I have are the ones that I bought?
fastq RNA-seq
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 40
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1
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1.9k
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Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
2.4 years ago by ev97 ▴ 40
2
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3
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1.9k
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Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit fastq RNA-seq SRA
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 40
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0
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4.0k
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Comment: Comment: Negative values after batch correction using removeBatchEffect from Limma
3.3 years ago by ev97 ▴ 40
0
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0
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631
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Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq combat-seq batch removeBatchEffect limma
3.3 years ago by ev97 ▴ 40
0
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0
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848
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How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq combat-seq batch removeBatchEffect limma
3.3 years ago by ev97 ▴ 40
2
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4
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4.0k
views
Negative values after batch correction using removeBatchEffect from Limma
batch limma removeBatchEffect rna-seq batch-effect
updated 18 months ago by 45k • written 3.3 years ago by ▴ 40
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0
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1.4k
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
3.3 years ago by ev97 ▴ 40
1
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2
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1.4k
views
What type of normalization does removeBatchEffect function require as the input?
batch limma removeBatchEffect rna-seq batch-effect
updated 18 months ago by 45k • written 3.3 years ago by ▴ 40
7
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4
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2.4k
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Is there any journal article to reference removeBatchEffect function from Limma?
batch removebatcheffect limma rna-seq batch-effect
updated 18 months ago by 45k • written 3.3 years ago by ▴ 40
0
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0
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2.4k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
3.3 years ago by ev97 ▴ 40
0
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1
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4.3k
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Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
3.3 years ago by ev97 ▴ 40
0
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1
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4.3k
views
Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
3.3 years ago by ev97 ▴ 40
55 results • Page 1 of 2
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