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questions
2
votes
8
replies
2.4k
views
orthologous proteins clustering
Reciprocal-Best-Hits
blast
updated 19 months ago by
Ram
43k • written 8.7 years ago by
biolab
★ 1.4k
0
votes
0
replies
2.7k
views
tophat fr-firststrand and fr-secondstrand
samtools
updated 19 months ago by
Ram
43k • written 8.8 years ago by
biolab
★ 1.4k
6
votes
7
replies
2.4k
views
Question about SAMTOOLS command
samtools
updated 18 months ago by
Ram
43k • written 8.8 years ago by
biolab
★ 1.4k
1
vote
3
replies
2.4k
views
How to search conserved protein domains?
domain
updated 18 months ago by
Ram
43k • written 8.8 years ago by
biolab
★ 1.4k
9
votes
7
replies
8.4k
views
How to get unique mapped reads?
bam
mapping
updated 17 months ago by
Ram
43k • written 8.9 years ago by
biolab
★ 1.4k
3
votes
2
replies
2.7k
views
How to evaluate RNA-seq quality if having three replicates?
RNA-Seq
updated 17 months ago by
Ram
43k • written 8.9 years ago by
biolab
★ 1.4k
4
votes
7
replies
3.0k
views
RNA-seq triple replicates
RNAseq
tophat2
cufflinks
updated 17 months ago by
Ram
43k • written 8.9 years ago by
biolab
★ 1.4k
8
votes
10
replies
3.2k
views
Command To Change Fasta File Format
linux
command-line
updated 8.9 years ago by
Biostar
20 • written 10.5 years ago by
biolab
★ 1.4k
4
votes
3
replies
7.6k
views
How to get gene coding sequences based on GFF file?
perl
python
gff
updated 16 months ago by
Ram
43k • written 8.9 years ago by
biolab
★ 1.4k
3
votes
6
replies
3.3k
views
MEME: how to get figures of conserved motifs?
meme
updated 16 months ago by
Ram
43k • written 9.0 years ago by
biolab
★ 1.4k
21
votes
14
replies
12k
views
8 follow
How to randamly extract reads from a FASTQ file?
fastq
updated 15 months ago by
Ram
43k • written 9.0 years ago by
biolab
★ 1.4k
4
votes
7
replies
2.3k
views
Which tools to group orthologous proteins?
orthologous
updated 22 months ago by
Ram
43k • written 9.1 years ago by
biolab
★ 1.4k
5
votes
9
replies
4.5k
views
Perl Stript:Break Contigs Into Overlapping Sequences
perl
updated 14 months ago by
Ram
43k • written 10.6 years ago by
biolab
★ 1.4k
0
votes
2
replies
1.7k
views
Why Tophat with either firststrand or secondstrand options produces the same XS?
mapping
tophat
updated 2.6 years ago by
Ram
43k • written 9.1 years ago by
biolab
★ 1.4k
10
votes
3
replies
16k
views
Can BWA MEM input file be in fasta format?
fasta
bwa
updated 23 months ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
2
votes
2
replies
2.0k
views
Cufflinks Question: how to find assembled parts differing from annotated parts?
mapping
cufflinks
updated 23 months ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
1
vote
2
replies
4.2k
views
bowtie2 --score-min option
bowtie2
local-alignment
updated 24 months ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.3k
views
Web resources for downloading intergenic regions from many plant species?
intergenic
plant
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
6
votes
7
replies
4.1k
views
Perl script: generate pseudo-CDSs from intergenic region
perl
updated 18 months ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
3
votes
6
replies
2.9k
views
running segemehl problem
segemehl
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
2
votes
3
replies
2.6k
views
How to include strand information in the result when running bedtools complement?
bedtools
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
18
votes
5
replies
5.5k
views
human genome toplevel files
genome
human
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
5
votes
6
replies
6.8k
views
use bedtools to find overlaps of bed and gff files
gff
bedtools
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
4
votes
6
replies
2.4k
views
Pubmed search for all Nature journals
pubmed
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
2
votes
4
replies
2.5k
views
USEARCH for orthologous genes identification
orthologous
blast
usearch
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
1
vote
8
replies
3.7k
views
RSeQC (infer_experiment) problem
RSeQC
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
1
vote
4
replies
5.9k
views
Bowtie mismatch settings
bowtie
mismatch
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
3
votes
12
replies
2.6k
views
What tools to map partial reads on genome?
mapping
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
0
votes
0
replies
1.5k
views
how to produce mapping graph based on blat result?
blat
mapping
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
6
votes
4
replies
4.7k
views
tophat --library-type option
tophat
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
0
votes
9
replies
2.7k
views
how to test if BLAST installed in perl script?
perl
blast
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
0
votes
4
replies
2.5k
views
How to calculate RPKM after tophat mapping
rpkm
tophat
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
1
vote
4
replies
3.7k
views
Single-end vs pair-end mapping
tophat
bowtie
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
2
votes
4
replies
2.0k
views
Find conserved motif
alignment
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
7
votes
4
replies
4.6k
views
question about Bowtie2 command
bowtie2
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
3
votes
8
replies
2.8k
views
exact sam file information
sam
bowtie
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
2
votes
6
replies
4.6k
views
Can bowtie detect exon-intron splicing?
bowtie2
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
26
votes
5
replies
24k
views
BLAST options: max_target_seqs and num_alignments
blast
updated 8 weeks ago by
Lada
▴ 30 • written 9.5 years ago by
biolab
★ 1.4k
10
votes
2
replies
5.9k
views
Where to find rRNA, tRNA, snoRNA, snRNA sequences for Arabidopsis?
trna
snrna
snorna
rrna
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
6
votes
6
replies
5.5k
views
question about drawing heatmap with R
heatmap
r
updated 3.1 years ago by
Ram
43k • written 9.6 years ago by
biolab
★ 1.4k
4
votes
3
replies
7.0k
views
BLASTP criteria for identification of paralogous and orthologous genes
orthologous
paralogous
updated 3.1 years ago by
Ram
43k • written 9.6 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.0k
views
Clustering of miRNAs from a variety of species
alignment
mirna
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
0
votes
2
replies
2.3k
views
how to evaluate protein motif conservation?
conservation
alignment
updated 2.4 years ago by
Ram
43k • written 9.6 years ago by
biolab
★ 1.4k
5
votes
5
replies
5.5k
views
NCBI GeneID vs ProteinID database
NCBI
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
5
votes
7
replies
1.9k
views
Find site feature according to GFF3 file
GFF3
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
3
votes
4
replies
2.7k
views
Ensembl multigenome alignment
ensembl
multigenome
alignment
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
5
votes
3
replies
2.6k
views
merge two files
perl
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
0
votes
0
replies
2.0k
views
How to draw mapping graph?
mapping
R
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
biolab
★ 1.4k
9
votes
5
replies
6.5k
views
tools for GO analysis
GO
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
biolab
★ 1.4k
1
vote
3
replies
2.8k
views
short protein BLAST
blast
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
biolab
★ 1.4k
135 results • Page
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