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9
votes
6
replies
13k
views
samtools tview symbols
samtools
updated 10.3 years ago by 12k • written 10.3 years ago by ★ 1.4k
8
votes
7
replies
4.7k
views
Question about bowtie
bowtie
updated 2.8 years ago by 154k • written 11.2 years ago by ★ 1.4k
24
votes
16
replies
42k
views
11 follow
Any tools converting Genbank format to GFF3 format?
genbank gff
updated 3.2 years ago by ★ 3.7k • written 10.6 years ago by ★ 1.4k
4
votes
8
replies
9.1k
views
Blast Against Sra Dataset
blast
updated 3.4 years ago by 45k • written 12.0 years ago by ★ 1.4k
2
votes
4
replies
3.8k
views
problem with bedtools complement: how to extract strand information?
bedtools
updated 3.8 years ago by 45k • written 11.0 years ago by ★ 1.4k
3
votes
4
replies
5.6k
views
Plant orthologous gene database
Orthologous-database
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.4k
60
votes
15
replies
87k
views
9 follow
BAM/SAM to FASTA conversion
sam bam
updated 3.6 years ago by 45k • written 10.7 years ago by ★ 1.4k
0
votes
1
reply
4.3k
views
Comment: A: Find mismatch and INDEL position
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.4k
0
votes
1
reply
3.3k
views
Comment: C: perl script: extracting mir-target information based on a list
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.4k
0
votes
0
replies
3.3k
views
Comment: C: perl script: extracting mir-target information based on a list
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.4k
0
votes
1
reply
7.9k
views
Comment: C: Usage of Perl Needleman/Wunsch Module
updated 5.8 years ago by 45k • written 11.3 years ago by ★ 1.4k
1
vote
2
replies
2.7k
views
How to highlight regions in RNA second structure
RNA second structure
updated 5.9 years ago by ▴ 10 • written 7.7 years ago by ★ 1.4k
0
votes
0
replies
6.0k
views
Comment: C: IGV view of bam file
updated 5.9 years ago by 45k • written 9.9 years ago by ★ 1.4k
0
votes
1
reply
6.0k
views
Comment: C: IGV view of bam
updated 5.9 years ago by 45k • written 9.9 years ago by ★ 1.4k
0
votes
1
reply
6.0k
views
Comment: C: IGV view of bam
updated 5.9 years ago by 45k • written 9.9 years ago by ★ 1.4k
0
votes
1
reply
6.0k
views
Comment: C: IGV view of bam
updated 5.9 years ago by 45k • written 9.9 years ago by ★ 1.4k
0
votes
1
reply
3.6k
views
Comment: C: Fasta sequence extraction
updated 5.9 years ago by 45k • written 9.9 years ago by ★ 1.4k
3
votes
1
reply
3.6k
views
Comment: C: Fasta sequence extraction
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
0
replies
9.3k
views
Comment: C: Where to find BLAST+ default parameters?
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.4k
1
vote
2
replies
16k
views
Comment: C: Script To Calculate Dinucleotide Frequency For Many Sequences
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
1
reply
6.5k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
1
reply
6.5k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
0
replies
6.5k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
1
reply
6.5k
views
Comment: Comment: Why some lines of BAM file do not contain NH tag
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: Comment: How to decrease computing time of reciprocal BLAST
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.4k
0
votes
1
reply
3.7k
views
Comment: C: RNA-seq triple replicates
updated 6.0 years ago by 45k • written 10.3 years ago by ★ 1.4k
169
votes
52
replies
148k
views
28 follow
Fastq Convert To Fasta
perl
12.0 years ago by biolab ★ 1.4k
0
votes
0
replies
8.3k
views
Comment: A: How to get gene coding sequences based on GFF file?
updated 6.0 years ago by 45k • written 10.4 years ago by ★ 1.4k
1
vote
5
replies
3.2k
views
Interesting Question about RNAhybrid
RNAfold RNAhybrid
updated 4.0 years ago by 45k • written 11.3 years ago by ★ 1.4k
12
votes
7
replies
9.7k
views
6 follow
How To Combine Several Perl Scripts Into One?
perl
updated 6.1 years ago by • 0 • written 11.8 years ago by ★ 1.4k
7
votes
11
replies
11k
views
8 follow
fastx toolkit problem: fastq to fasta
fastx
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.4k
0
votes
2
replies
4.1k
views
How to convert genomic position to transcript position?
gff
updated 7.0 years ago by 20 • written 9.7 years ago by ★ 1.4k
6
votes
5
replies
15k
views
NCBI protein IDs convert to gene IDs and then gene sequences
ncbi id
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.4k
2
votes
6
replies
5.7k
views
tophat failed: Warning: junction database is empty!
tophat mapping
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.4k
36
votes
13
replies
29k
views
8 follow
Get intronic and intergenic sequences based on gff file
GFF
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.4k
5
votes
11
replies
7.9k
views
Usage of Perl Needleman/Wunsch Module
alignment global needleman-wunsh PERL module
updated 3.8 years ago by 45k • written 11.4 years ago by ★ 1.4k
2
votes
3
replies
9.1k
views
bowtie problem: cannot locate bowtie index
bowtie
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.4k
3
votes
5
replies
3.4k
views
How to decrease computing time of reciprocal BLAST
blast Reciprocal-Best-Hits orthologous
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.4k
1
vote
1
reply
6.7k
views
Answer: A: Command or Perl script for changing headers of multiple FASTA files in a specifi
8.1 years ago by biolab ★ 1.4k
0
votes
0
replies
2.2k
views
bowtie XA tag
bowtie
8.3 years ago by biolab ★ 1.4k
0
votes
0
replies
5.5k
views
Comment: C: How to download raw data in batch from NCBI based on Series Accession number or
8.3 years ago by biolab ★ 1.4k
2
votes
9
replies
5.5k
views
How to download raw data in batch from NCBI based on Series Accession number or Platform ID
sra
updated 8.3 years ago by 103k • written 8.5 years ago by ★ 1.4k
0
votes
0
replies
4.4k
views
Comment: C: HISAT2: does the parameter -k 1 means unique mapping?
8.3 years ago by biolab ★ 1.4k
0
votes
0
replies
4.4k
views
Comment: C: HISAT2: does the parameter -k 1 means unique mapping?
8.3 years ago by biolab ★ 1.4k
4
votes
5
replies
4.4k
views
HISAT2: does the parameter -k 1 means unique mapping?
hisat2
updated 8.3 years ago by 48k • written 8.3 years ago by ★ 1.4k
0
votes
0
replies
4.3k
views
Comment: C: Is it necessary to include --known-splicesite-infile in HISAT2?
8.3 years ago by biolab ★ 1.4k
2
votes
2
replies
4.3k
views
Is it necessary to include --known-splicesite-infile in HISAT2?
hisat2
updated 8.3 years ago by 154k • written 8.3 years ago by ★ 1.4k
0
votes
0
replies
2.9k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
8.4 years ago by biolab ★ 1.4k
0
votes
1
reply
2.9k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
8.4 years ago by biolab ★ 1.4k
1
vote
1
reply
2.9k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
8.4 years ago by biolab ★ 1.4k
426 results • Page 1 of 9
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