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0
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540
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Calculate PSI values for pre-called splicing events in GFF from new fastq files
alternative spladder PSI splicing
18 months ago by sckinta ▴ 740
0
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2
replies
2.3k
views
Is there a way to subsample Hi-C at Hi-C matrix .cool file?
Hi-C loops
updated 23 months ago by ▴ 380 • written 4.3 years ago by ▴ 740
0
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1
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6.7k
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Comment: Comment: ICE normalization using JuicerTools
4.4 years ago by sckinta ▴ 740
0
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1
reply
1.4k
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Bioinformatics definition of TAD boundary
hiTADs Hi-C TAD
updated 4.4 years ago by ▴ 380 • written 4.5 years ago by ▴ 740
2
votes
1
reply
8.7k
views
Comment: C: How to interpret LRT < 0 in codeml branch-model based test?
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 740
0
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1
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8.7k
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Comment: C: How to interpret LRT < 0 in codeml branch-model based test?
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 740
0
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1
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8.8k
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Comment: C: orthomcl error: The total number of locks exceeds the lock table size at orthomc
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 740
0
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2
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8.8k
views
Comment: C: orthomcl error: The total number of locks exceeds the lock table size at orthomc
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 740
0
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0
replies
3.4k
views
Answer: A: Error Using Mysql For Orthomcl
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 740
161
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19
replies
46k
views
16 follow
Why Does Rna-Seq Read Count Fit Poisson Distribution?
rna-seq modeling
updated 3.8 years ago by 45k • written 11.9 years ago by ▴ 740
0
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0
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3.7k
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Comment: C: comparing ATAC-seq/ChIP-seq peaks
6.7 years ago by sckinta ▴ 740
0
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0
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3.7k
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Comment: C: comparing ATAC-seq/ChIP-seq peaks
6.7 years ago by sckinta ▴ 740
0
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1
reply
3.7k
views
Comment: C: comparing ATAC-seq/ChIP-seq peaks
6.7 years ago by sckinta ▴ 740
2
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6
replies
3.7k
views
comparing ATAC-seq/ChIP-seq peaks
ATAC-seq ChIP-Seq
updated 6.7 years ago by 89k • written 6.7 years ago by ▴ 740
4
votes
12
replies
6.8k
views
RNA-seq replicates not clustering
RNA-Seq clustering
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 740
1
vote
2
replies
2.5k
views
RNA-seq unbalanced batch effect correction
RNA-Seq edgeR R Batch-Effect
updated 17 months ago by 45k • written 7.0 years ago by ▴ 740
0
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1
reply
56k
views
Comment: C: Batch effects : ComBat or removebatcheffects (limma package) ?
7.1 years ago by sckinta ▴ 740
2
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2
replies
56k
views
Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
updated 17 months ago by 45k • written 7.1 years ago by ▴ 740
0
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1
reply
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
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0
replies
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
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1
reply
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
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1
reply
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
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0
replies
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
votes
1
reply
6.8k
views
Comment: C: RNA-seq replicates not clustering
7.1 years ago by sckinta ▴ 740
0
votes
1
reply
1.9k
views
Inconsistency on ensemble transcript id between ucsc and gencode
genome assembly
7.2 years ago by sckinta ▴ 740
0
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7
replies
13k
views
How to create a faster way to match a list of string to a list of patterns in r?
R string
updated 7.2 years ago by 56k • written 7.2 years ago by ▴ 740
0
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1
reply
13k
views
Comment: C: How to create a faster way to match a list of string to a list of patterns in r?
7.2 years ago by sckinta ▴ 740
0
votes
1
reply
13k
views
Comment: C: How to create a faster way to match a list of string to a list of patterns in r?
7.2 years ago by sckinta ▴ 740
0
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0
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8.5k
views
Comment: C: bcl2fastq report the whole sequences without trimming index and adaptor
7.3 years ago by sckinta ▴ 740
0
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0
replies
8.5k
views
Comment: C: bcl2fastq report the whole sequences without trimming index and adaptor
7.3 years ago by sckinta ▴ 740
0
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1
reply
8.5k
views
Comment: C: bcl2fastq report the whole sequences without trimming index and adaptor
7.3 years ago by sckinta ▴ 740
6
votes
8
replies
8.5k
views
bcl2fastq report the whole sequences without trimming index and adaptor
sequencing next-gen
updated 7.3 years ago by ▴ 560 • written 7.3 years ago by ▴ 740
4
votes
1
reply
5.2k
views
Does IDR (irreproducible discovery rate) higher mean less 'reproducible' or vice versa?
IDR ChIP-Seq
updated 7.3 years ago by ▴ 640 • written 7.7 years ago by ▴ 740
0
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2
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2.3k
views
how to download sequences of gene product associated with certain GO term
gene-annotation Go-term
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 740
0
votes
1
reply
2.7k
views
what does allele frequency changes mean through multiple pairwise comparisons?
allele-frequency
updated 3.1 years ago by 45k • written 9.8 years ago by ▴ 740
0
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0
replies
8.7k
views
Comment: C: How to interpret LRT < 0 in codeml branch-model based test?
9.8 years ago by sckinta ▴ 740
8
votes
6
replies
8.7k
views
How to interpret LRT < 0 in codeml branch-model based test?
Likelihood-Ratio-Test codeml branch-model
updated 3.1 years ago by 45k • written 9.8 years ago by ▴ 740
0
votes
0
replies
2.6k
views
how to add/update node id to a tree in Bio::Tree::Tree object
perl Bio.Tree
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 740
1
vote
2
replies
5.1k
views
How to specify a branch in the tree automatically for branch-site model codeml?
codeml tree
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 740
0
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0
replies
8.8k
views
Comment: C: orthomcl error: The total number of locks exceeds the lock table size at orthomc
9.9 years ago by sckinta ▴ 740
5
votes
11
replies
8.8k
views
orthomcl error: The total number of locks exceeds the lock table size at orthomclPairs
mysql orthomcl
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 740
0
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0
replies
3.6k
views
Comment: Comment: Tools to detect SNP supporting read count in each bam file
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 740
0
votes
1
reply
3.6k
views
Comment: C: Tools to detect SNP supporting read count in each bam file
10.3 years ago by sckinta ▴ 740
3
votes
4
replies
3.6k
views
Tools to detect SNP supporting read count in each bam file
alignment SNP
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 740
1
vote
4
replies
5.4k
views
Converting vcf to pileup
vcf pilup popoolation2 freebayes
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 740
1
vote
0
replies
2.8k
views
Should I retain ORFs predicted on minus strand of transcripts which assembled from strand-specific RNA-seq ?
TransDecoder strand-specific RNA-Seq
updated 3.9 years ago by 45k • written 10.4 years ago by ▴ 740
0
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0
replies
7.1k
views
Comment: Comment: Cd-Hit-Est-2D Segmentation Fault
updated 2.6 years ago by 45k • written 10.4 years ago by ▴ 740
0
votes
1
reply
2.4k
views
how to remove adaptor sequence which has more than 1 indexing barcode?
RNA-Seq sequencing
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 740
18
votes
4
replies
17k
views
Fastx Invalid Quality Score Value
fastx bash
updated 10.5 years ago by 20 • written 11.9 years ago by ▴ 740
5
votes
2
replies
3.9k
views
what cause high sequence duplication levels in Miseq?
RNA-Seq
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 740
63 results • Page 1 of 2
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