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0
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113
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Best codeml model for estimating omega, M0 ?
codeml ete3 evol
24 days ago by Adrian Pelin ★ 2.6k
0
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1
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340
views
PAML/codeml Poxvirus dN/dS
dNdS codeml selection
updated 7 months ago by ▴ 490 • written 7 months ago by ★ 2.6k
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0
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532
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Comment: Comment: Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
17 months ago by Adrian Pelin ★ 2.6k
2
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2
replies
532
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Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
mRNA decay RNA-seq
17 months ago by Adrian Pelin ★ 2.6k
3
votes
1
reply
487
views
Differential pathways between 2 gene sets
enrichment GO KEGG
updated 18 months ago by 13k • written 18 months ago by ★ 2.6k
2
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4
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2.6k
views
List of human protein coding genes with given name (known function?)
RNA-Seq Annotation Human
updated 2.6 years ago by ★ 9.4k • written 4.7 years ago by ★ 2.6k
0
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1
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982
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Comment: C: Need opinion on correct bioinfo analysis; NGS on virus competition exp
4.0 years ago by Adrian Pelin ★ 2.6k
0
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0
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982
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Comment: C: Need opinion on correct bioinfo analysis; NGS on virus competition exp
4.0 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
982
views
Comment: C: Need opinion on correct bioinfo analysis; NGS on virus competition exp
4.0 years ago by Adrian Pelin ★ 2.6k
0
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6
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982
views
Need opinion on correct bioinfo analysis; NGS on virus competition exp
Abundace RNA-Seq
4.0 years ago by Adrian Pelin ★ 2.6k
0
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6
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4.4k
views
Blast2Go Local Www-Blast Not Working
updated 4.1 years ago by 20 • written 10.4 years ago by ★ 2.6k
0
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1
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2.0k
views
Comment: C: Test for recombination in a clonal tetraploid?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
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0
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2.5k
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Comment: C: Linkage Disequlibirum (R^2) = recombination?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
0
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1
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26k
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Comment: C: Calculate Per Exon/Per Gene Coverage
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
0
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1
reply
26k
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Comment: C: Calculate Per Exon/Per Gene Coverage
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
1
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2
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4.5k
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Answer: A: How to assemble the bacterial genome; spades
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.6k
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0
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4.5k
views
Comment: C: Merging Bayesian probability values with bootstraps from ML
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
0
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1
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22k
views
Comment: C: Efficiently process (view, analize, clip ends, convert, demultiplex, dereplicate
updated 4.3 years ago by 43k • written 9.6 years ago by ★ 2.6k
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1
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8.1k
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Comment: C: bedtools: extracting no coverage regions
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.6k
0
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1
reply
7.1k
views
Comment: C: Error in SNP calling, samtools
updated 4.4 years ago by 43k • written 9.8 years ago by ★ 2.6k
1
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1
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3.1k
views
Answer: A: finding reads from fastq files corresponds to particular transcript from fasta f
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
1
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1
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1.6k
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Answer: A: Where to find the reference genome from the Human Genome Project?
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
2
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1
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6.7k
views
Answer: A: How to draw a coverage vs GC content plot for assembled transcriptome?
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
1
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1
reply
8.9k
views
Comment: Comment: DNA composition - all k-mers and their frequency in some sequencing data
updated 20 months ago by 43k • written 8.4 years ago by ★ 2.6k
1
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1
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8.9k
views
Comment: C: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
1
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1
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8.9k
views
Comment: C: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
0
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0
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15k
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Comment: C: How to remove contamination from the transcriptome assembly
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
0
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1
reply
15k
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Comment: C: How to remove contamination from the transcriptome assembly
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.6k
1
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0
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5.0k
views
Answer: A: adding suffix /1 & /2 to PE data - abyss input data
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.6k
0
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0
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5.0k
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Comment: C: adding suffix /1 & /2 to PE data - abyss input data
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.6k
0
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0
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3.0k
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Comment: C: VelvetOptimizer:Error in running the program
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.6k
2
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3
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1.5k
views
Advice on DE analysis of mouse and human merged RNA-seq data
RNA-Seq DEseq Human Mouse
updated 4.5 years ago by 14k • written 4.6 years ago by ★ 2.6k
1
vote
1
reply
19k
views
Comment: C: Recommendations For Heterozygous Genome Assembly Software
updated 4.5 years ago by 43k • written 9.0 years ago by ★ 2.6k
0
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1
reply
3.8k
views
Comment: C: How to assess coverage of Ray metagenomic assemblies
updated 4.5 years ago by 43k • written 9.1 years ago by ★ 2.6k
1
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0
replies
18k
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Comment: C: How To Combine Two Samtools Commands.
updated 4.5 years ago by 43k • written 8.4 years ago by ★ 2.6k
2
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2
replies
7.2k
views
Comment: C: please some one help me step by step i was really exhausted
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.6k
1
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1
reply
7.2k
views
Comment: Comment: please some one help me step by step i was really exhausted
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.6k
9
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3
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7.2k
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Answer: A: please some one help me step by step i was really exhausted
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.6k
0
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0
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4.3k
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Comment: C: installation of artemis on linux redhat
updated 4.5 years ago by 43k • written 9.9 years ago by ★ 2.6k
1
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2
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9.9k
views
Comment: C: MrBayes: Implementing the LG model
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.6k
1
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2
replies
9.9k
views
Comment: C: MrBayes: Implementing the LG model
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.6k
4
votes
2
replies
9.9k
views
Answer: A: MrBayes: Implementing the LG model
updated 4.5 years ago by 43k • written 10.0 years ago by ★ 2.6k
0
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1
reply
19k
views
Comment: A: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
4.6 years ago by Adrian Pelin ★ 2.6k
1
vote
11
replies
4.1k
views
bedtools merge - removing features completly overlapped by other features
bedtools
updated 4.6 years ago by ▴ 40 • written 6.6 years ago by ★ 2.6k
0
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0
replies
5.3k
views
Answer: A: Ka/Ks (Or Dn/Ds) Calculation From Sequenced Transcriptome Contigs
4.6 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
2.0k
views
Comment: C: Crazy high file size for human genome from Ensembl
4.6 years ago by Adrian Pelin ★ 2.6k
10
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3
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2.0k
views
Crazy high file size for human genome from Ensembl
Ensembl
updated 4.6 years ago by 23k • written 4.6 years ago by ★ 2.6k
0
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0
replies
1.3k
views
Comment: C: How can I reproduce features of signalp TMHMM and phobius?
4.6 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
2.6k
views
Comment: C: List of human protein coding genes with given name (known function?)
4.7 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
1.6k
views
Comment: C: Extracting reads mapping to CDS regions but not the first 45bp after ATG
4.7 years ago by Adrian Pelin ★ 2.6k
509 results • Page 1 of 11
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