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4
votes
2
replies
5.3k
views
Command blast excluding species
blast
updated 6.9 years ago by 20 • written 10.0 years ago by ★ 2.6k
2
votes
4
replies
3.6k
views
Detecting Variants near repeats
freebayes vcf bam repeats
updated 7.2 years ago by ★ 3.6k • written 10.0 years ago by ★ 2.6k
2
votes
0
replies
18k
views
Comment: C: Nextera Transposon Contamination
7.2 years ago by Adrian Pelin ★ 2.6k
15
votes
7
replies
14k
views
6 follow
Removing PCR duplicates from .fastq without .bam alignment
PCR duplicates illumina fastq
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.6k
0
votes
0
replies
1.3k
views
Comment: C: Merge/Collapse regions within a certain distance
7.3 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
1.3k
views
Comment: C: Merge/Collapse regions within a certain distance
7.3 years ago by Adrian Pelin ★ 2.6k
1
vote
3
replies
1.3k
views
Merge/Collapse regions within a certain distance
bedtools
updated 7.3 years ago by 161k • written 7.3 years ago by ★ 2.6k
0
votes
0
replies
2.2k
views
Comment: C: ABYSS kmer coverage
7.3 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
2.2k
views
Comment: C: ABYSS kmer coverage
7.3 years ago by Adrian Pelin ★ 2.6k
1
vote
1
reply
1.5k
views
multiIntersectBed for SNPs, need to compare but not merge intervals
SNP bedtools intersect
updated 7.3 years ago by 35k • written 7.3 years ago by ★ 2.6k
2
votes
4
replies
3.8k
views
Genetic Distance Versus Physical Distance
distance
updated 7.4 years ago by ▴ 10 • written 10.3 years ago by ★ 2.6k
6
votes
4
replies
2.4k
views
Predict AA sequence from assembled transcripts
RNA-Seq Assembly nt2aa
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.6k
1
vote
1
reply
8.4k
views
Comment: C: Awk- How to compare 2 files with common columns and then get the output file wit
7.6 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
1.6k
views
Comment: C: Is this de novo assembly too big for proteomics?
7.9 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
6.4k
views
Comment: C: Fisher's exact test gives p-value 0
8.0 years ago by Adrian Pelin ★ 2.6k
6
votes
6
replies
6.4k
views
Fisher's exact test gives p-value 0
enrichment R fisher's exact test
8.0 years ago by Adrian Pelin ★ 2.6k
2
votes
3
replies
7.5k
views
RPS Blast, COG and KOG analysis
KOG COG RPSBLAST
updated 8.0 years ago by ▴ 150 • written 9.1 years ago by ★ 2.6k
0
votes
0
replies
5.6k
views
Comment: C: BaseSpace says NextSeq run finished, can't download FastQ
8.0 years ago by Adrian Pelin ★ 2.6k
3
votes
4
replies
5.6k
views
BaseSpace says NextSeq run finished, can't download FastQ
DNA-Seq illumina basespace
updated 8.0 years ago by 13k • written 8.0 years ago by ★ 2.6k
0
votes
0
replies
5.6k
views
Comment: C: BaseSpace says NextSeq run finished, can't download FastQ
8.0 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
4.2k
views
Comment: C: Best tool for Fst calculation with over a thousand SNP among 6 populations??
8.1 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
10k
views
Comment: C: dxy (Nei 1987) calculation
8.1 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
2.0k
views
Comment: C: Denovo assembly of Putative Plasmid
8.1 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
5.9k
views
Comment: C: Benefits of 150 bp reads over 100 bp reads in RNA-seq
8.1 years ago by Adrian Pelin ★ 2.6k
2
votes
1
reply
2.5k
views
Comment: C: reconstructing a phylogenetic multilocus tree
8.2 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.0k
views
Comment: C: Demultiplexing SRA data
8.2 years ago by Adrian Pelin ★ 2.6k
2
votes
4
replies
2.6k
views
RNA-seq experiment of mouse organs
RNA-Seq mouse SRA NGS
updated 8.2 years ago by 35k • written 8.2 years ago by ★ 2.6k
1
vote
0
replies
2.1k
views
Comment: C: 14 contigs recieved from SMRTportal using HGAP.3
8.2 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
4.5k
views
Comment: C: How to assemble the bacterial genome; spades
8.3 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
3.4k
views
Answer: A: To compare assembled transcripts of two species
8.3 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
2.0k
views
Comment: C: how sequenced? dna between the pair-end reads
8.3 years ago by Adrian Pelin ★ 2.6k
16
votes
7
replies
9.4k
views
7 follow
Any software to view newick/nexus trees command line?
phylogeny cmd
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.6k
0
votes
0
replies
1.8k
views
Comment: C: Compare two methods
8.4 years ago by Adrian Pelin ★ 2.6k
2
votes
1
reply
1.7k
views
Find restriction enzyme combo that cuts every 2-3kb best
Genome restriction
updated 21 months ago by 43k • written 8.4 years ago by ★ 2.6k
0
votes
0
replies
5.4k
views
Comment: C: Plasmid Genome Assembly
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
2.4k
views
UCSC_TFBS enrichment with DAVID
TF DAVID
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
13k
views
Comment: C: Most "Accurate" Gtf File For Cufflinks??
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
5.4k
views
Answer: A: Plasmid Genome Assembly
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
2
replies
2.2k
views
Determine likely TF(s) regulating a list of genes
microarray gene regulatiom ncRNA TF
updated 8.4 years ago by ★ 1.4k • written 8.4 years ago by ★ 2.6k
0
votes
0
replies
2.0k
views
Comment: C: microRNA target prediction based on sequence
8.4 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
2.3k
views
Answer: A: Given 3 FASTA files, how can I find putative orthologs?
8.4 years ago by Adrian Pelin ★ 2.6k
4
votes
15
replies
7.1k
views
8 follow
Error in SNP calling, samtools
NGS bcftools vcf SNP
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 2.6k
0
votes
0
replies
2.2k
views
Comment: C: RNA-Seq DE advice please!
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
4.7k
views
Comment: C: De novo genome assembly strategy
8.4 years ago by Adrian Pelin ★ 2.6k
3
votes
3
replies
4.7k
views
Answer: A: De novo genome assembly strategy
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
5.4k
views
Comment: C: Why most of alternative alleles are the alleles with major frequency?
8.4 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
5.4k
views
Answer: A: Why most of alternative alleles are the alleles with major frequency?
8.4 years ago by Adrian Pelin ★ 2.6k
4
votes
5
replies
2.9k
views
bwa mapping to several similar strains, restrict maximum hits?
bwa sam bwa-mem bwa-aln fasta
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.6k
0
votes
0
replies
6.8k
views
Comment: C: How to draw a coverage vs GC content plot for assembled transcriptome?
8.5 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
6.8k
views
Comment: C: How to draw a coverage vs GC content plot for assembled transcriptome?
8.5 years ago by Adrian Pelin ★ 2.6k
509 results • Page 3 of 11
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