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Comment: Comment: Editing Human Reference Genome by adding a CDS
19 days ago by LDT ▴ 340
2
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3
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371
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Editing Human Reference Genome by adding a CDS
gff agat transcriptome
updated 19 days ago by 54k • written 19 days ago by ▴ 340
1
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2
replies
945
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How to Modify Reference Sequence and Annotation Files
reference edit annotation
updated 7 weeks ago by • 0 • written 2.1 years ago by ▴ 340
11
votes
3
replies
870
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Whole genome comparison of two closely related plant species
mummer comparative-genomics whole-genome-alignment whole-genome-comparison mauve
updated 12 months ago by ▴ 60 • written 13 months ago by ▴ 340
5
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9
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3.8k
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Transform a data.frame to GRranges in R
GenomicRanges R data.frame bed
updated 17 months ago by • 0 • written 21 months ago by ▴ 340
1
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0
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1.3k
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Comment: Comment: Understanding 1/1 output in VCF
17 months ago by LDT ▴ 340
6
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8
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1.3k
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Understanding 1/1 output in VCF
vcf
17 months ago by LDT ▴ 340
0
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1
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1.3k
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Comment: Comment: Understanding 1/1 output in VCF
17 months ago by LDT ▴ 340
0
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1
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1.3k
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Comment: Comment: Understanding 1/1 output in VCF
17 months ago by LDT ▴ 340
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0
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1.1k
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Comment: Comment: How to find newly submitted accessions in NCBI
17 months ago by LDT ▴ 340
0
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1
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1.1k
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Comment: Comment: How to find newly submitted accessions in NCBI
17 months ago by LDT ▴ 340
0
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1
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1.1k
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Comment: Comment: How to find newly submitted accessions in NCBI
17 months ago by LDT ▴ 340
5
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7
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1.1k
views
How to find newly submitted accessions in NCBI
ncbi
updated 12 months ago by ▴ 30 • written 17 months ago by ▴ 340
2
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1
reply
878
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Convert a bed file to bigbed
bed bed12 ucsc
updated 17 months ago by 4.6k • written 17 months ago by ▴ 340
0
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1
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934
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Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
17 months ago by LDT ▴ 340
7
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1
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3.0k
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Remove multiple samples from a VCF file using bcftools
vcf bcftools vcftools
updated 17 months ago by 161k • written 17 months ago by ▴ 340
3
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0
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3.7k
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Answer: Answer: Genome annotation: convert gtf to gff3 file
17 months ago by LDT ▴ 340
0
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0
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934
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Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
17 months ago by LDT ▴ 340
0
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1
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934
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Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
17 months ago by LDT ▴ 340
5
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6
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934
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error: Couldn't open trackDb.txt in hubCheck
UCSC hubCheck
updated 17 months ago by 11k • written 17 months ago by ▴ 340
0
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0
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942
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Comment: Comment: Error while converting a bed to bigBed file
17 months ago by LDT ▴ 340
0
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1
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942
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Comment: Comment: Error while converting a bed to bigBed file
17 months ago by LDT ▴ 340
0
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0
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607
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Comment: Comment: Convert gff to bed, including non coding elements
17 months ago by LDT ▴ 340
4
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2
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607
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Convert gff to bed, including non coding elements
bed RNA non-coding gff
17 months ago by LDT ▴ 340
0
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0
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994
views
Answer: Answer: How to change colors in boxplot in R?
updated 17 months ago by 43k • written 18 months ago by ▴ 340
4
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4
replies
942
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Error while converting a bed to bigBed file
bed UCSC kentUtils bigBed
17 months ago by LDT ▴ 340
1
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2
replies
1.3k
views
How to measure pairwise genetic distance in all samples of a VCF file
pop-gen pairwise-distance VCF
updated 18 months ago by 10k • written 18 months ago by ▴ 340
1
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1
reply
605
views
Calculate missing genotypes per sample with plink2
missing vcf plink2 genotypes
updated 18 months ago by 10k • written 18 months ago by ▴ 340
0
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1
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61k
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Comment: Comment: How To Sort Bed Format File
18 months ago by LDT ▴ 340
0
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0
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1.1k
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Comment: Comment: How to convert transcript counts to gene counts
18 months ago by LDT ▴ 340
1
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4
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1.1k
views
How to convert transcript counts to gene counts
tximport r gene_counts RNAseq
updated 18 months ago by ▴ 510 • written 18 months ago by ▴ 340
0
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0
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4.1k
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Comment: Comment: Arabidopsis Araport11 genome annotation file
18 months ago by LDT ▴ 340
3
votes
5
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2.1k
views
Count missing and non missing values in a VCF file
vcf bcftools vcftools
updated 18 months ago by ▴ 520 • written 18 months ago by ▴ 340
1
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1
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522
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Answer: Answer: How to change values on X-axis in matplotlib ?
18 months ago by LDT ▴ 340
0
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1
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2.1k
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Comment: Comment: Count missing and non missing values in a VCF file
18 months ago by LDT ▴ 340
0
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1
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4.1k
views
Comment: Comment: Arabidopsis Araport11 genome annotation file
19 months ago by LDT ▴ 340
8
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8
replies
885
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How to convert heterozygous variants to ./. in a VCF file?
heterozygosity vcf bcftools
updated 19 months ago by 43k • written 19 months ago by ▴ 340
0
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1
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885
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
19 months ago by LDT ▴ 340
0
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1
reply
885
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
19 months ago by LDT ▴ 340
0
votes
0
replies
885
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
updated 19 months ago by 43k • written 19 months ago by ▴ 340
0
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0
replies
1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by LDT ▴ 340
0
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1
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1.0k
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
19 months ago by LDT ▴ 340
2
votes
1
reply
1.0k
views
Answer: Answer: How do you obtain a list of transcription factors from a genome?
19 months ago by LDT ▴ 340
1
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0
replies
740
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Comment: Comment: How do I understand -Z option of infernal cmscan?
19 months ago by LDT ▴ 340
3
votes
1
reply
740
views
Answer: Answer: How do I understand -Z option of infernal cmscan?
19 months ago by LDT ▴ 340
0
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1
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1.3k
views
Comment: Comment: How to convert a for loop to a Job-array in LSF cluster
19 months ago by LDT ▴ 340
3
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2
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1.7k
views
Answer: Answer: How to select rows which has NA in any column in the dataframe in R?
19 months ago by LDT ▴ 340
7
votes
6
replies
1.3k
views
How to convert a for loop to a Job-array in LSF cluster
lsf cluster-computing Job-array hpc
updated 19 months ago by 11k • written 19 months ago by ▴ 340
0
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0
replies
1.3k
views
Comment: Comment: How to convert a for loop to a Job-array in LSF cluster
19 months ago by LDT ▴ 340
0
votes
1
reply
17k
views
Comment: Comment: How to update rlang in R?
19 months ago by LDT ▴ 340
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