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Comment: Comment: Open question: What's the best way to share an R environement?
15 months ago by Ondina ▴ 100
6
votes
3
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772
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Open question: What's the best way to share an R environement?
R environement conda reproductibility
updated 15 months ago by 89k • written 15 months ago by ▴ 100
0
votes
0
replies
392
views
Mutual information method for gene markers identification ???
scRNA-seq mutual-information
updated 21 months ago by 45k • written 21 months ago by ▴ 100
0
votes
1
reply
1.3k
views
PyMOL: how to list all selection names?
pymol
updated 2.1 years ago by ★ 2.1k • written 2.1 years ago by ▴ 100
0
votes
0
replies
5.7k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
2.2 years ago by Ondina ▴ 100
6
votes
7
replies
5.7k
views
Set up label.color with the same colors as the cluster colors in Seurat DimPlot() ?
seurat scRNA-seq
2.2 years ago by Ondina ▴ 100
1
vote
0
replies
5.7k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
2.2 years ago by Ondina ▴ 100
0
votes
1
reply
5.7k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
2.2 years ago by Ondina ▴ 100
1
vote
0
replies
1.5k
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
2.3 years ago by Ondina ▴ 100
1
vote
1
reply
1.5k
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
2.3 years ago by Ondina ▴ 100
0
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1
reply
1.5k
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
2.3 years ago by Ondina ▴ 100
4
votes
5
replies
1.5k
views
Samtools sort error: [pretty_header] invalid header
sam RNA-seq bam samtools
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 100
1
vote
0
replies
1.1k
views
Answer: Answer: MatrisomeDB down?
2.8 years ago by Ondina ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: MatrisomeDB down?
2.8 years ago by Ondina ▴ 100
3
votes
4
replies
1.1k
views
MatrisomeDB down?
matrisome database
updated 2.8 years ago by 154k • written 2.8 years ago by ▴ 100
2
votes
1
reply
1.7k
views
Best method for small cluster (<100 cells) differential expression analysis in single-cell analysis
differential single-cell seurat expression
2.8 years ago by Ondina ▴ 100
0
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0
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4.0k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.9 years ago by Ondina ▴ 100
0
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0
replies
4.0k
views
Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.9 years ago by Ondina ▴ 100
5
votes
5
replies
4.0k
views
Searching for a way to plot Seurat style equivalent dotplot for gene expression with DESeq on RNA-seq data
dotplot DESeq rna-seq visualisation
2.9 years ago by Ondina ▴ 100
12
votes
5
replies
3.9k
views
scRNA-seq: Which is the best method for computing the % of similarity between two clusters using R?
RNAseq singlecell clustering
updated 3.1 years ago by ▴ 800 • written 3.8 years ago by ▴ 100
0
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0
replies
1.2k
views
Comment: Comment: GEO Query error
3.3 years ago by Ondina ▴ 100
2
votes
2
replies
1.2k
views
GEO Query error
GEOQuery
3.3 years ago by Ondina ▴ 100
4
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2
replies
2.2k
views
Is there a way to easily export a .mtx file from a seurat object and use it in the scNetViz app for Cytoscape?
conversion cytoscape singlecell format seurat
updated 3.3 years ago by ▴ 650 • written 3.3 years ago by ▴ 100
0
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0
replies
939
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Comment: Comment: getting a job only with masters degree
3.6 years ago by Ondina ▴ 100
0
votes
0
replies
3.9k
views
Comment: Comment: scRNA-seq: Which is the best method for computing the % of similarity between tw
3.7 years ago by Ondina ▴ 100
0
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0
replies
7.6k
views
Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
3.8 years ago by Ondina ▴ 100
2
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1
reply
7.6k
views
Answer: Answer: How to compare two Seurat object (sample) in order to find top markers?
3.9 years ago by Ondina ▴ 100
2
votes
2
replies
1.8k
views
Volcano 3D plot on single cell seurat data ?
single-cell volcano3d seurat
3.9 years ago by Ondina ▴ 100
1
vote
0
replies
1.8k
views
Answer: Answer: Volcano 3D plot on single cell seurat data ?
3.9 years ago by Ondina ▴ 100
0
votes
0
replies
2.1k
views
Comment: Comment: cellranger count help
4.0 years ago by Ondina ▴ 100
3
votes
4
replies
4.2k
views
Searching expression for one particular gene in Seurat object issue (Seurat, R)
Seurat scRNA-seq R
updated 4.1 years ago by ★ 19k • written 4.1 years ago by ▴ 100
0
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1
reply
4.2k
views
Comment: Comment: Searching expression for one particular gene in Seurat object issue (Seurat, R)
4.1 years ago by Ondina ▴ 100
0
votes
0
replies
24k
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Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
4.1 years ago by Ondina ▴ 100
0
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1
reply
24k
views
Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
4.1 years ago by Ondina ▴ 100
0
votes
0
replies
3.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
4.1 years ago by Ondina ▴ 100
0
votes
1
reply
3.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
4.1 years ago by Ondina ▴ 100
0
votes
0
replies
3.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
4.1 years ago by Ondina ▴ 100
0
votes
1
reply
3.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
4.1 years ago by Ondina ▴ 100
0
votes
1
reply
3.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
updated 4.1 years ago by 154k • written 4.1 years ago by ▴ 100
3
votes
9
replies
3.8k
views
Filter DGElist object: keep only genes expressed in sample at the same time as a particular gene of interest
edger RNA-seq dgelist R
4.1 years ago by Ondina ▴ 100
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