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1
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1
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511
views
How to see how long a command takes in Galaxy?
Galaxy
updated 2.3 years ago by ▴ 180 • written 2.3 years ago by ▴ 80
2
votes
2
replies
1.0k
views
Is transcript linked with the reference genome
transcripts NGS bed_file
updated 2.3 years ago by ▴ 180 • written 2.3 years ago by ▴ 80
1
vote
2
replies
700
views
Unrecognised chromosome value (e.g. chr16_KI270853v1_alt) in the UCSC Genome Browser
bed_file UCSC_Genome_Browser
2.3 years ago by ManuelDB ▴ 80
0
votes
1
reply
579
views
I do not get what I expected from Biomart
Biomart Ensemble Bed
updated 2.3 years ago by 142k • written 2.3 years ago by ▴ 80
1
vote
3
replies
635
views
How to evaluate which genome reference and alignment tool is "the best" for my pipeline?
pipeline NGS
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 80
0
votes
0
replies
635
views
Comment: Comment: How to evaluate which genome reference and alignment tool is "the best" for my p
2.3 years ago by ManuelDB ▴ 80
1
vote
1
reply
537
views
Why in my Per Tile Sequence Quality plot, the Y-axis starts with 1101?
fastqc
updated 2.3 years ago by 142k • written 2.3 years ago by ▴ 80
0
votes
0
replies
281
views
I dont really undertand how interval-padding from GenotypeGVCF works
GenotypeGVCF
2.3 years ago by ManuelDB ▴ 80
0
votes
1
reply
594
views
Difficulty finding useful info from Genome in a Bottle
GIAB
updated 2.3 years ago by 142k • written 2.3 years ago by ▴ 80
2
votes
1
reply
625
views
GATK QC where I start?
NGS QC GATK
updated 2.3 years ago by ▴ 520 • written 2.3 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: I can't understand my sam files
2.3 years ago by ManuelDB ▴ 80
2
votes
3
replies
1.1k
views
I can't understand my sam files
NGS SAM
updated 2.3 years ago by 14k • written 2.3 years ago by ▴ 80
0
votes
1
reply
689
views
While using CombineVariants with vcf files, these are recognise as gvcf
GATK3
updated 2.3 years ago by 142k • written 2.3 years ago by ▴ 80
1
vote
4
replies
838
views
Parsing arguments in BWA tool
bwa
updated 2.4 years ago by 82k • written 2.4 years ago by ▴ 80
1
vote
1
reply
661
views
Mapping genes from VCF by exclusively using python
vcf
updated 17 months ago by 43k • written 2.4 years ago by ▴ 80
0
votes
2
replies
1.1k
views
Comment: Comment: Why are there many start_codon for the same gene in hg38.refGene.gtf
2.4 years ago by ManuelDB ▴ 80
4
votes
4
replies
1.1k
views
Why are there many start_codon for the same gene in hg38.refGene.gtf
gtf
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 80
0
votes
0
replies
1.2k
views
Comment: Comment: Annotating genes from the coordinates of variants of a VCF file
2.4 years ago by ManuelDB ▴ 80
1
vote
2
replies
1.2k
views
Annotating genes from the coordinates of variants of a VCF file
gffutils
2.4 years ago by ManuelDB ▴ 80
0
votes
0
replies
682
views
Understating the metrics histogram generated by Markduplicates (Picard)
NGS Picard
2.4 years ago by ManuelDB ▴ 80
0
votes
0
replies
3.6k
views
Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.4 years ago by ManuelDB ▴ 80
6
votes
8
replies
3.6k
views
Why GATK4 doesn't carry out local realignment around indels ?
GATK
2.4 years ago by ManuelDB ▴ 80
0
votes
0
replies
399
views
MLPA analysis with Genemaker is a pain
Genemaker
2.4 years ago by ManuelDB ▴ 80
0
votes
1
reply
704
views
Malformed walker argument using MarkDuplicatesSpark
NGS
updated 2.5 years ago by 161k • written 2.5 years ago by ▴ 80
2
votes
1
reply
623
views
In the NGS pipeline, why read are sorted before marking duplicates?
NGS
updated 2.5 years ago by 8.7k • written 2.5 years ago by ▴ 80
3
votes
1
reply
535
views
Developing my own NGS pipeline
NGS
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 80
0
votes
0
replies
400
views
Calculating sensitivity and specificity between different NGS pipelines
NGS
2.6 years ago by ManuelDB ▴ 80
2
votes
1
reply
1.3k
views
Illumina Read Stitching
NGS
updated 2.6 years ago by 142k • written 2.6 years ago by ▴ 80
0
votes
0
replies
845
views
Comment: Comment: Looking for volunteer positions
2.6 years ago by ManuelDB ▴ 80
3
votes
2
replies
845
views
Looking for volunteer positions
python
2.6 years ago by ManuelDB ▴ 80
0
votes
0
replies
823
views
Comment: Comment: Where can I find VCF files of the same source
2.7 years ago by ManuelDB ▴ 80
0
votes
2
replies
823
views
Where can I find VCF files of the same source
same belonging to source VCF
2.7 years ago by ManuelDB ▴ 80
132 results • Page 3 of 3
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