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0
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421
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Handling FILTER Fields in VCF Metadata and Body
VCF
10 months ago by ManuelDB ▴ 110
0
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0
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736
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Comment: Comment: Hard filtering to reduce false positive variants due to poly track sequences
10 months ago by ManuelDB ▴ 110
2
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2
replies
736
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Hard filtering to reduce false positive variants due to poly track sequences
GATK
updated 10 months ago by 152k • written 10 months ago by ▴ 110
0
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1
reply
552
views
Filtering Non-Homozygous and Non-Heterozygous Variants in DNA Analysis Pipeline
NGS
updated 11 months ago by 45k • written 11 months ago by ▴ 110
1
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0
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707
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Comment: Comment: Optimising False Positive Detection in NGS Pipelines Using Mapping and Base Qual
11 months ago by ManuelDB ▴ 110
2
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2
replies
707
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Optimising False Positive Detection in NGS Pipelines Using Mapping and Base Quality Scores
BaseQualityRankSumTest
11 months ago by ManuelDB ▴ 110
0
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0
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805
views
Comment: Comment: Replace SB flag by PASS in my VCF file
11 months ago by ManuelDB ▴ 110
2
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4
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805
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Replace SB flag by PASS in my VCF file
VCF
11 months ago by ManuelDB ▴ 110
0
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0
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805
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Comment: Comment: Replace SB flag by PASS in my VCF file
11 months ago by ManuelDB ▴ 110
2
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1
reply
489
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GATK4 VariantAnnotator deletes variants
GATK4
updated 11 months ago by 166k • written 11 months ago by ▴ 110
0
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0
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318
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Understanding the transcript version comparison in the ncbi webside
NCBI
12 months ago by ManuelDB ▴ 110
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1
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1.1k
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Comment: Comment: New versions of the same transcripts ID may have different exons coordinates??
12 months ago by ManuelDB ▴ 110
3
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4
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1.1k
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New versions of the same transcripts ID may have different exons coordinates??
RefSeq
updated 12 months ago by 21k • written 12 months ago by ▴ 110
1
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1
reply
459
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How can I get the total list of RefSeq transcripts?
RefSeq
updated 12 months ago by 152k • written 12 months ago by ▴ 110
0
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1
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1.2k
views
Answer: Answer: Could not parse a VCF file when using bcftools annotate
13 months ago by ManuelDB ▴ 110
1
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3
replies
1.2k
views
Could not parse a VCF file when using bcftools annotate
bcftools
updated 13 months ago by 45k • written 13 months ago by ▴ 110
1
vote
1
reply
479
views
Alternative Database for Somatic Indel Realignment (COSMIC Alternative)
COSMIC
updated 13 months ago by ▴ 290 • written 13 months ago by ▴ 110
0
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1
reply
498
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PEAR seems to have sense to me
PEAR
updated 15 months ago by 152k • written 15 months ago by ▴ 110
0
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0
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331
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MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
MultiGemini
16 months ago by ManuelDB ▴ 110
0
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0
replies
1.3k
views
Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
16 months ago by ManuelDB ▴ 110
0
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0
replies
485
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Comment: Comment: FastaAlternateReferenceMaker merges overlapping regions
17 months ago by ManuelDB ▴ 110
0
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1
reply
485
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FastaAlternateReferenceMaker merges overlapping regions
FastaAlternateReferenceMaker
updated 17 months ago by 45k • written 17 months ago by ▴ 110
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0
replies
1.1k
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Comment: Comment: CIGAR and query sequence lengths differ
19 months ago by ManuelDB ▴ 110
0
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0
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1.1k
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Comment: Comment: CIGAR and query sequence lengths differ
19 months ago by ManuelDB ▴ 110
1
vote
3
replies
1.1k
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CIGAR and query sequence lengths differ
pysam samtools
19 months ago by ManuelDB ▴ 110
1
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1
reply
824
views
How to properly mock a (Pysam) read
pysam
updated 19 months ago by 102k • written 19 months ago by ▴ 110
2
votes
1
reply
741
views
Issue softclipping reads when they belong and don't belong to a common amplicon
Samtools softclip
updated 19 months ago by ▴ 390 • written 19 months ago by ▴ 110
1
vote
1
reply
597
views
Two identical reads in my bam files but with a different in CIGAR are mapped in a different location in IGV
pysam
19 months ago by ManuelDB ▴ 110
1
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0
replies
597
views
Answer: Answer: Two identical reads in my bam files but with a different in CIGAR are mapped in
19 months ago by ManuelDB ▴ 110
0
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0
replies
1.9k
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Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
20 months ago by ManuelDB ▴ 110
0
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0
replies
1.9k
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Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
20 months ago by ManuelDB ▴ 110
0
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1
reply
1.9k
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
20 months ago by ManuelDB ▴ 110
0
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2
replies
1.9k
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
20 months ago by ManuelDB ▴ 110
0
votes
1
reply
1.9k
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
20 months ago by ManuelDB ▴ 110
5
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10
replies
1.9k
views
Different number of reads when converting data from FASTQ to BAM and CRAM to FASTQ
picard
20 months ago by ManuelDB ▴ 110
0
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0
replies
1.5k
views
Comment: Comment: FASTQ to BAM to CRAM to FASTQ
20 months ago by ManuelDB ▴ 110
0
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0
replies
45k
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Comment: Comment: installing samtools with conda - overcoming two common errors
20 months ago by ManuelDB ▴ 110
1
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0
replies
24k
views
Comment: Comment: How To Efficiently Sort A Fastq File By Entry Id?
20 months ago by ManuelDB ▴ 110
5
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4
replies
1.5k
views
FASTQ to BAM to CRAM to FASTQ
Samtools
20 months ago by ManuelDB ▴ 110
0
votes
4
replies
2.2k
views
Cannot read non-existent file: when executing MarkDuplicates in a script
GATK4
updated 21 months ago by • 0 • written 3.3 years ago by ▴ 110
0
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0
replies
428
views
ERROR::INVALID_ALIGNMENT_START Alignment start should be 0 because reference name = *.
Pysam ValidateSamFile
21 months ago by ManuelDB ▴ 110
0
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0
replies
1.0k
views
Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
21 months ago by ManuelDB ▴ 110
1
vote
3
replies
1.0k
views
How to deal with reads which CIGAR is [0-9]+S
CIGAR ampliconclip
updated 21 months ago by ★ 1.4k • written 21 months ago by ▴ 110
0
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0
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3.1k
views
Comment: Comment: Liftover GRCh37 to hg38 1kg/GATK.
22 months ago by ManuelDB ▴ 110
6
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2
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3.1k
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Liftover GRCh37 to hg38 1kg/GATK.
Liftover
22 months ago by ManuelDB ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: samtools ampliconclip option --strand is not working?
22 months ago by ManuelDB ▴ 110
5
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2
replies
1.2k
views
samtools ampliconclip option --strand is not working?
samtools ampliconclip
updated 4 months ago by ▴ 50 • written 22 months ago by ▴ 110
1
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0
replies
1.6k
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
22 months ago by ManuelDB ▴ 110
0
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1
reply
1.6k
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
22 months ago by ManuelDB ▴ 110
4
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7
replies
1.6k
views
How is the format of the bed file for samtools ampliconclip
samtools ampliconclip
updated 22 months ago by ▴ 390 • written 22 months ago by ▴ 110
149 results • Page 1 of 3
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