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Remove batch effects on the train set to avoid information leakage
r limma batch-effect
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 200
0
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11
replies
2.2k
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Performing differential expression analysis after applying transformations on my data
normalization differential-expression r
2.2 years ago by AlexStar ▴ 200
0
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1
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2.2k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
2.3 years ago by AlexStar ▴ 200
0
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1
reply
1.3k
views
How to tune and use the MetaVolcanoR
limma Bioconductor r MetaVolcanoR
updated 2.3 years ago by ★ 2.1k • written 3.2 years ago by ▴ 200
0
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0
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1.9k
views
Comment: Comment: TPM normalization but library size isn't equal to 1 million
2.4 years ago by AlexStar ▴ 200
1
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4
replies
1.9k
views
TPM normalization but library size isn't equal to 1 million
normalization TPM cancer r
updated 2.4 years ago by ★ 7.8k • written 2.4 years ago by ▴ 200
0
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1
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1.4k
views
Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
2.4 years ago by AlexStar ▴ 200
0
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1
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1.4k
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Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
2.4 years ago by AlexStar ▴ 200
0
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5
replies
1.4k
views
Using IMmuno-PREdictive Score (IMPRES)
scaling TPM cancer normalization r
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 200
1
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1
reply
1.5k
views
Filtering genes after TPM normalization
filtering normalization TPM r
updated 2.4 years ago by ▴ 250 • written 2.4 years ago by ▴ 200
0
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0
replies
1.5k
views
Comment: Comment: What does "OS_CNSR" and "PFS_CNSR" mean?
2.4 years ago by AlexStar ▴ 200
0
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2
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1.5k
views
What does "OS_CNSR" and "PFS_CNSR" mean?
survival cancer r
2.4 years ago by AlexStar ▴ 200
2
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3
replies
2.1k
views
What is the best way to clean bulk RNA-seq data?
normalization TPM r
updated 2.4 years ago by ★ 1.7k • written 2.5 years ago by ▴ 200
0
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1
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1.4k
views
Comment: Comment: What type of normalization did they use in this article?
2.4 years ago by AlexStar ▴ 200
2
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3
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1.4k
views
What type of normalization did they use in this article?
normalization TPM r
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 200
0
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1
reply
1.9k
views
Comment: Comment: Is there anyway to cancel CPM normalization?
2.5 years ago by AlexStar ▴ 200
0
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1
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1.9k
views
Comment: Comment: Is there anyway to cancel CPM normalization?
2.6 years ago by AlexStar ▴ 200
0
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5
replies
1.9k
views
Is there anyway to cancel CPM normalization?
r TPM normalization
updated 2.4 years ago by 15k • written 2.6 years ago by ▴ 200
2
votes
1
reply
1.5k
views
Timeout error using Biomart to get gene lengths
r biomart
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 200
0
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1
reply
766
views
How to identify which are the the pre therapy samples?
data RNA-seq
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 200
0
votes
2
replies
907
views
Where can I get the ICB datasets in this website?
data r ICB
updated 2.8 years ago by 154k • written 2.8 years ago by ▴ 200
0
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1
reply
1.6k
views
Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
2.8 years ago by AlexStar ▴ 200
0
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1
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1.6k
views
Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
2.8 years ago by AlexStar ▴ 200
1
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5
replies
1.6k
views
Check what are the columns that are enriched in each t-SNE cluster
r Dimensionality-reduction MachineLearning Rtsne
updated 2.8 years ago by ★ 30k • written 2.8 years ago by ▴ 200
0
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0
replies
840
views
cutpointr package in R for finding the optimal cut of a predictive model
r ROC machine caret learning
3.0 years ago by AlexStar ▴ 200
0
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0
replies
2.8k
views
Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
3.0 years ago by AlexStar ▴ 200
0
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1
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2.8k
views
Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
3.0 years ago by AlexStar ▴ 200
1
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5
replies
2.8k
views
Is it adviced to remove genes with very low expression in TPM data?
r TPM RNA-seq clean
updated 3.0 years ago by 4.8k • written 3.0 years ago by ▴ 200
3
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1
reply
1.1k
views
How to calculate the effictive gene length in R?
r TPM normalization
3.1 years ago by AlexStar ▴ 200
1
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2
replies
4.5k
views
Error in bmRequest(request = request, httr_config = httr_config, verbose = verbose) : Gateway Timeout (HTTP 504).
r ensemble biomart
updated 3.1 years ago by ★ 2.1k • written 3.1 years ago by ▴ 200
0
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1
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3.9k
views
Comment: Comment: Understanding log2 transformation for TPM
3.1 years ago by AlexStar ▴ 200
0
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3
replies
3.9k
views
Understanding log2 transformation for TPM
r transformation TPM log2
updated 3.1 years ago by ★ 1.3k • written 3.1 years ago by ▴ 200
0
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1
reply
1.6k
views
Comment: Comment: Batch effect correction with cell type enrichment analysis
3.1 years ago by AlexStar ▴ 200
3
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0
replies
9.3k
views
Comment: Comment: Convert FPKM to TPM in R
3.1 years ago by AlexStar ▴ 200
0
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1
reply
1.6k
views
Comment: Comment: Batch effect correction with cell type enrichment analysis
3.1 years ago by AlexStar ▴ 200
5
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1
reply
2.2k
views
argument ".f" is missing, with no default
r exons genes
updated 3.1 years ago by 13k • written 3.1 years ago by ▴ 200
2
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6
replies
1.6k
views
Batch effect correction with cell type enrichment analysis
limma RNA-seq r batch-effect
updated 19 months ago by 45k • written 3.1 years ago by ▴ 200
0
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0
replies
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.1 years ago by AlexStar ▴ 200
0
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1
reply
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.1 years ago by AlexStar ▴ 200
0
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1
reply
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.1 years ago by AlexStar ▴ 200
0
votes
1
reply
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.1 years ago by AlexStar ▴ 200
0
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1
reply
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.1 years ago by AlexStar ▴ 200
0
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0
replies
998
views
Comment: Comment: Comparing gene expression between two groups, using boxplots
3.2 years ago by AlexStar ▴ 200
0
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1
reply
998
views
Comparing gene expression between two groups, using boxplots
r DEG TPM boxplot
3.2 years ago by AlexStar ▴ 200
0
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1
reply
1.1k
views
Comment: Comment: TPM normalization result
3.2 years ago by AlexStar ▴ 200
1
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3
replies
1.1k
views
TPM normalization result
normalization r TPM
updated 3.2 years ago by 5.2k • written 3.2 years ago by ▴ 200
0
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0
replies
4.8k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
3.2 years ago by AlexStar ▴ 200
2
votes
12
replies
4.8k
views
The best way to get gene lengths for 15K+ genes?
r EDAseq RNA-seq
3.1 years ago by AlexStar ▴ 200
0
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0
replies
3.2k
views
Comment: Comment: Warning - longer object length is not a multiple of shorter object length
3.2 years ago by AlexStar ▴ 200
0
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1
reply
3.2k
views
Comment: Comment: Warning - longer object length is not a multiple of shorter object length
3.2 years ago by AlexStar ▴ 200
150 results • Page 2 of 3
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