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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
11 weeks ago by JACKY ▴ 160
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0
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637
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
11 weeks ago by JACKY ▴ 160
0
votes
1
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637
views
Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
11 weeks ago by JACKY ▴ 160
1
vote
7
replies
637
views
How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata RNA
updated 11 weeks ago by 85k • written 11 weeks ago by ▴ 160
2
votes
6
replies
648
views
Finding scRNA-seq datasets of healthy human ovaries
python GEO single-cell RNA
updated 3 months ago by 44k • written 3 months ago by ▴ 160
0
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0
replies
648
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
3 months ago by JACKY ▴ 160
0
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0
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648
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
3 months ago by JACKY ▴ 160
1
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1
reply
648
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
3 months ago by JACKY ▴ 160
1
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1
reply
328
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Reading files from different types as H5AD
python scanpy anndata single-cell
updated 3 months ago by ★ 3.0k • written 3 months ago by ▴ 160
0
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1
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1.1k
views
Comment: Comment: Applying the metacell2 algorithm using python
4 months ago by JACKY ▴ 160
0
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0
replies
169
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Empty kernel in SEACells model
single-cell scanpy seacells python anndata
4 months ago by JACKY ▴ 160
0
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1
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1.1k
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Comment: Comment: Applying the metacell2 algorithm using python
5 months ago by JACKY ▴ 160
0
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9
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1.1k
views
Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 4 months ago by ★ 2.0k • written 5 months ago by ▴ 160
0
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0
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1.1k
views
Comment: Comment: Applying the metacell2 algorithm using python
5 months ago by JACKY ▴ 160
0
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1
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1.1k
views
Comment: Comment: Applying the metacell2 algorithm using python
5 months ago by JACKY ▴ 160
12
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7
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5.6k
views
6 follow
Convert FPKM to TPM in R
r TPM normalization meta-analysis
updated 7 months ago by 44k • written 2.0 years ago by ▴ 160
4
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10
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1.3k
views
6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO RNA-seq
updated 9 months ago by 44k • written 9 months ago by ▴ 160
0
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1
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1.3k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
9 months ago by JACKY ▴ 160
0
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0
replies
1.3k
views
Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
9 months ago by JACKY ▴ 160
6
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5
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949
views
Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM log2-transformation r
updated 9 months ago by 88k • written 9 months ago by ▴ 160
1
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2
replies
510
views
What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 10 months ago by 146k • written 10 months ago by ▴ 160
0
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1
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644
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Comment: Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
11 months ago by JACKY ▴ 160
0
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3
replies
644
views
Discrepancies Between GEO Page and its article - Seeking Clarification
cancer GEO RNA-seq
updated 11 months ago by 44k • written 11 months ago by ▴ 160
1
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1
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4.6k
views
Comment: Comment: Code for reading h5ad files in R
11 months ago by JACKY ▴ 160
0
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1
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4.6k
views
Comment: Comment: Code for reading h5ad files in R
11 months ago by JACKY ▴ 160
1
vote
5
replies
4.6k
views
Code for reading h5ad files in R
r RNA-seq single-cell
updated 11 months ago by ★ 1.7k • written 11 months ago by ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
13 months ago by JACKY ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
13 months ago by JACKY ▴ 160
0
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0
replies
1.2k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
13 months ago by JACKY ▴ 160
0
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8
replies
1.2k
views
Understaning the result of Meta-analysis of differential expression across datasets
r differential-expression genes
updated 13 months ago by 20k • written 13 months ago by ▴ 160
0
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0
replies
1.3k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
14 months ago by JACKY ▴ 160
0
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1
reply
1.3k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
14 months ago by JACKY ▴ 160
0
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1
reply
1.3k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
14 months ago by JACKY ▴ 160
0
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1
reply
1.3k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
14 months ago by JACKY ▴ 160
0
votes
1
reply
652
views
Remove batch effects on the train set to avoid information leakage
r limma batch-effect
updated 14 months ago by 44k • written 14 months ago by ▴ 160
0
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11
replies
1.3k
views
Performing differential expression analysis after applying transformations on my data
normalization differential-expression r
14 months ago by JACKY ▴ 160
0
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1
reply
1.3k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
14 months ago by JACKY ▴ 160
0
votes
1
reply
813
views
How to tune and use the MetaVolcanoR
limma Bioconductor r MetaVolcanoR
updated 15 months ago by ★ 2.0k • written 2.1 years ago by ▴ 160
0
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0
replies
1.2k
views
Comment: Comment: TPM normalization but library size isn't equal to 1 million
15 months ago by JACKY ▴ 160
1
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4
replies
1.2k
views
TPM normalization but library size isn't equal to 1 million
normalization TPM cancer r
updated 15 months ago by ★ 6.9k • written 15 months ago by ▴ 160
0
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1
reply
900
views
Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
16 months ago by JACKY ▴ 160
0
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1
reply
900
views
Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
16 months ago by JACKY ▴ 160
0
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5
replies
900
views
Using IMmuno-PREdictive Score (IMPRES)
scaling TPM cancer normalization r
updated 16 months ago by 44k • written 16 months ago by ▴ 160
1
vote
1
reply
845
views
Filtering genes after TPM normalization
filtering normalization TPM r
updated 16 months ago by ▴ 250 • written 16 months ago by ▴ 160
0
votes
0
replies
482
views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM cancer r
16 months ago by JACKY ▴ 160
0
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0
replies
912
views
Comment: Comment: What does "OS_CNSR" and "PFS_CNSR" mean?
16 months ago by JACKY ▴ 160
0
votes
2
replies
912
views
What does "OS_CNSR" and "PFS_CNSR" mean?
survival cancer r
16 months ago by JACKY ▴ 160
2
votes
3
replies
1.2k
views
What is the best way to clean bulk RNA-seq data?
normalization TPM r
updated 16 months ago by ★ 1.3k • written 16 months ago by ▴ 160
0
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1
reply
754
views
Comment: Comment: What type of normalization did they use in this article?
16 months ago by JACKY ▴ 160
2
votes
3
replies
754
views
What type of normalization did they use in this article?
normalization TPM r
updated 16 months ago by 44k • written 16 months ago by ▴ 160
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