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0
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219
views
How can I get raw CPTAC protein quantification data ?
CPTAC
proteomics
proteins
python
transcriptome
25 days ago by
AlexStar
▴ 170
0
votes
1
reply
392
views
Comment:
Comment: Understanding how to deal with Brain snRNA-seq data
4 weeks ago by
AlexStar
▴ 170
0
votes
3
replies
392
views
Understanding how to deal with Brain snRNA-seq data
scanpy
python
single-cell
anndata
RNA
updated 4 weeks ago by
Ming Tommy Tang
★ 4.6k • written 4 weeks ago by
AlexStar
▴ 170
0
votes
1
reply
637
views
Comment:
Comment: snRNA-seq of the healthy human brain
11 weeks ago by
AlexStar
▴ 170
0
votes
1
reply
637
views
Comment:
Comment: snRNA-seq of the healthy human brain
11 weeks ago by
AlexStar
▴ 170
2
votes
5
replies
637
views
snRNA-seq of the healthy human brain
python
scanpy
anndata
single-cell
updated 11 weeks ago by
LChart
4.8k • written 11 weeks ago by
AlexStar
▴ 170
0
votes
2
replies
487
views
Comment:
Comment: Ontology for column naming in RNA-seq data
11 weeks ago by
AlexStar
▴ 170
0
votes
4
replies
487
views
Ontology for column naming in RNA-seq data
python
scanpy
anndata
single-cell
updated 11 weeks ago by
GenoMax
149k • written 11 weeks ago by
AlexStar
▴ 170
0
votes
0
replies
436
views
Comment:
Comment: Help with finding scRNA-seq data
3 months ago by
AlexStar
▴ 170
0
votes
2
replies
436
views
Help with finding scRNA-seq data
10x
scanpy
python
single-cell
anndata
3 months ago by
AlexStar
▴ 170
0
votes
0
replies
802
views
Comment:
Comment: Using Tumor Immune Dysfunction and Exclusion (TIDE)
3 months ago by
AlexStar
▴ 170
0
votes
2
replies
802
views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM
cancer
r
3 months ago by
AlexStar
▴ 170
3
votes
1
reply
454
views
What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x
scanpy
python
single-cell
anndata
updated 3 months ago by
jared.andrews07
★ 18k • written 3 months ago by
AlexStar
▴ 170
0
votes
1
reply
284
views
What are the epithelial cells subtype in esophagus tissue ?
python
scanpy
anndata
single-cell
updated 4 months ago by
ATpoint
87k • written 4 months ago by
AlexStar
▴ 170
0
votes
1
reply
937
views
Comment:
Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
7 months ago by
AlexStar
▴ 170
0
votes
0
replies
937
views
Comment:
Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
7 months ago by
AlexStar
▴ 170
0
votes
1
reply
937
views
Comment:
Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
7 months ago by
AlexStar
▴ 170
1
vote
7
replies
937
views
How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy
python
single-cell
anndata
RNA
updated 7 months ago by
ATpoint
87k • written 7 months ago by
AlexStar
▴ 170
2
votes
6
replies
909
views
Finding scRNA-seq datasets of healthy human ovaries
python
GEO
single-cell
RNA
updated 8 months ago by
Ram
44k • written 8 months ago by
AlexStar
▴ 170
0
votes
0
replies
909
views
Comment:
Comment: Finding scRNA-seq datasets of healthy human ovaries
8 months ago by
AlexStar
▴ 170
0
votes
0
replies
909
views
Comment:
Comment: Finding scRNA-seq datasets of healthy human ovaries
8 months ago by
AlexStar
▴ 170
1
vote
1
reply
909
views
Comment:
Comment: Finding scRNA-seq datasets of healthy human ovaries
8 months ago by
AlexStar
▴ 170
1
vote
1
reply
769
views
Reading files from different types as H5AD
python
scanpy
anndata
single-cell
updated 8 months ago by
bk11
★ 3.0k • written 8 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Applying the metacell2 algorithm using python
9 months ago by
AlexStar
▴ 170
0
votes
0
replies
261
views
Empty kernel in SEACells model
single-cell
scanpy
seacells
python
anndata
9 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Applying the metacell2 algorithm using python
9 months ago by
AlexStar
▴ 170
0
votes
9
replies
1.6k
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 9 months ago by
Wayne
★ 2.1k • written 9 months ago by
AlexStar
▴ 170
0
votes
0
replies
1.6k
views
Comment:
Comment: Applying the metacell2 algorithm using python
9 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Applying the metacell2 algorithm using python
9 months ago by
AlexStar
▴ 170
12
votes
7
replies
6.8k
views
6 follow
Convert FPKM to TPM in R
r
TPM
normalization
meta-analysis
updated 11 months ago by
Ram
44k • written 2.4 years ago by
AlexStar
▴ 170
4
votes
10
replies
1.7k
views
6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO
RNA-seq
updated 13 months ago by
Ram
44k • written 13 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.7k
views
Comment:
Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
13 months ago by
AlexStar
▴ 170
0
votes
0
replies
1.7k
views
Comment:
Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
13 months ago by
AlexStar
▴ 170
6
votes
5
replies
1.2k
views
Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM
log2-transformation
r
updated 13 months ago by
Kevin Blighe
89k • written 13 months ago by
AlexStar
▴ 170
1
vote
2
replies
612
views
What type of cancer did they study in this paper?
cancer
RNAseq
single-cell
updated 14 months ago by
GenoMax
149k • written 14 months ago by
AlexStar
▴ 170
0
votes
1
reply
780
views
Comment:
Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
16 months ago by
AlexStar
▴ 170
0
votes
3
replies
780
views
Discrepancies Between GEO Page and its article - Seeking Clarification
cancer
GEO
RNA-seq
updated 16 months ago by
Ram
44k • written 16 months ago by
AlexStar
▴ 170
1
vote
1
reply
6.8k
views
Comment:
Comment: Code for reading h5ad files in R
16 months ago by
AlexStar
▴ 170
0
votes
1
reply
6.8k
views
Comment:
Comment: Code for reading h5ad files in R
16 months ago by
AlexStar
▴ 170
1
vote
5
replies
6.8k
views
Code for reading h5ad files in R
r
RNA-seq
single-cell
updated 16 months ago by
fracarb8
★ 1.7k • written 16 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.4k
views
Comment:
Comment: Understaning the result of Meta-analysis of differential expression across datas
18 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.4k
views
Comment:
Comment: Understaning the result of Meta-analysis of differential expression across datas
18 months ago by
AlexStar
▴ 170
0
votes
0
replies
1.4k
views
Comment:
Comment: Understaning the result of Meta-analysis of differential expression across datas
18 months ago by
AlexStar
▴ 170
0
votes
8
replies
1.4k
views
Understaning the result of Meta-analysis of differential expression across datasets
r
differential-expression
genes
updated 18 months ago by
i.sudbery
21k • written 18 months ago by
AlexStar
▴ 170
0
votes
0
replies
1.6k
views
Comment:
Comment: Performing differential expression analysis after applying transformations on my
18 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Performing differential expression analysis after applying transformations on my
18 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Performing differential expression analysis after applying transformations on my
18 months ago by
AlexStar
▴ 170
0
votes
1
reply
1.6k
views
Comment:
Comment: Performing differential expression analysis after applying transformations on my
18 months ago by
AlexStar
▴ 170
0
votes
1
reply
753
views
Remove batch effects on the train set to avoid information leakage
r
limma
batch-effect
updated 18 months ago by
Ram
44k • written 18 months ago by
AlexStar
▴ 170
0
votes
11
replies
1.6k
views
Performing differential expression analysis after applying transformations on my data
normalization
differential-expression
r
18 months ago by
AlexStar
▴ 170
148 results • Page
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