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6
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6 follow
Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM log2-transformation r
updated 12 hours ago by 89k • written 22 months ago by ▴ 200
0
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0
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657
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Comment: Comment: Python deconvolution tools for bulk RNA-seq data
13 days ago by AlexStar ▴ 200
0
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3
replies
657
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Python deconvolution tools for bulk RNA-seq data
RNA-seq bulk-rna-seq Deconvolution python transcriptomics
13 days ago by AlexStar ▴ 200
0
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0
replies
490
views
How can I get raw CPTAC protein quantification data ?
CPTAC proteomics proteins python transcriptome
9 months ago by AlexStar ▴ 200
0
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1
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915
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
9 months ago by AlexStar ▴ 200
0
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3
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915
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Understanding how to deal with Brain snRNA-seq data
scanpy python single-cell anndata RNA
updated 9 months ago by ★ 4.7k • written 9 months ago by ▴ 200
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1
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1.4k
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Comment: Comment: snRNA-seq of the healthy human brain
11 months ago by AlexStar ▴ 200
0
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1
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1.4k
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Comment: Comment: snRNA-seq of the healthy human brain
11 months ago by AlexStar ▴ 200
2
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5
replies
1.4k
views
snRNA-seq of the healthy human brain
python scanpy anndata single-cell
updated 11 months ago by 5.2k • written 11 months ago by ▴ 200
0
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2
replies
988
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Comment: Comment: Ontology for column naming in RNA-seq data
11 months ago by AlexStar ▴ 200
0
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4
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988
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Ontology for column naming in RNA-seq data
python scanpy anndata single-cell
updated 11 months ago by 154k • written 11 months ago by ▴ 200
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0
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860
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Comment: Comment: Help with finding scRNA-seq data
11 months ago by AlexStar ▴ 200
0
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3
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860
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Help with finding scRNA-seq data
10x scanpy python single-cell anndata
updated 6 months ago by ▴ 100 • written 11 months ago by ▴ 200
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0
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1.2k
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Comment: Comment: Using Tumor Immune Dysfunction and Exclusion (TIDE)
12 months ago by AlexStar ▴ 200
0
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2
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1.2k
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Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM cancer r
12 months ago by AlexStar ▴ 200
3
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1
reply
851
views
What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x scanpy python single-cell anndata
updated 12 months ago by ★ 19k • written 12 months ago by ▴ 200
0
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1
reply
537
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What are the epithelial cells subtype in esophagus tissue ?
python scanpy anndata single-cell
updated 13 months ago by 90k • written 13 months ago by ▴ 200
0
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1
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1.5k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
15 months ago by AlexStar ▴ 200
0
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0
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1.5k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
15 months ago by AlexStar ▴ 200
0
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1
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1.5k
views
Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
15 months ago by AlexStar ▴ 200
1
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7
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1.5k
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How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata RNA
updated 15 months ago by 90k • written 15 months ago by ▴ 200
2
votes
6
replies
1.3k
views
Finding scRNA-seq datasets of healthy human ovaries
python GEO single-cell RNA
updated 16 months ago by 45k • written 16 months ago by ▴ 200
0
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0
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1.3k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
16 months ago by AlexStar ▴ 200
0
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0
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1.3k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
16 months ago by AlexStar ▴ 200
1
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1
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1.3k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
16 months ago by AlexStar ▴ 200
1
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1
reply
2.2k
views
Reading files from different types as H5AD
python scanpy anndata single-cell
updated 17 months ago by ★ 3.1k • written 17 months ago by ▴ 200
0
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1
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2.7k
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Comment: Comment: Applying the metacell2 algorithm using python
18 months ago by AlexStar ▴ 200
0
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0
replies
453
views
Empty kernel in SEACells model
single-cell scanpy seacells python anndata
18 months ago by AlexStar ▴ 200
0
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1
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2.7k
views
Comment: Comment: Applying the metacell2 algorithm using python
18 months ago by AlexStar ▴ 200
0
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9
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2.7k
views
Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 18 months ago by ★ 2.1k • written 18 months ago by ▴ 200
0
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0
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2.7k
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Comment: Comment: Applying the metacell2 algorithm using python
18 months ago by AlexStar ▴ 200
0
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1
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2.7k
views
Comment: Comment: Applying the metacell2 algorithm using python
18 months ago by AlexStar ▴ 200
12
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7
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9.3k
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6 follow
Convert FPKM to TPM in R
r TPM normalization meta-analysis
updated 20 months ago by 45k • written 3.1 years ago by ▴ 200
4
votes
10
replies
3.2k
views
6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO RNA-seq
updated 22 months ago by 45k • written 22 months ago by ▴ 200
0
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1
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3.2k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
22 months ago by AlexStar ▴ 200
0
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0
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3.2k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
22 months ago by AlexStar ▴ 200
1
vote
2
replies
1.0k
views
What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 23 months ago by 154k • written 23 months ago by ▴ 200
0
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1
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1.1k
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Comment: Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
2.1 years ago by AlexStar ▴ 200
0
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3
replies
1.1k
views
Discrepancies Between GEO Page and its article - Seeking Clarification
cancer GEO RNA-seq
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 200
1
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1
reply
10k
views
Comment: Comment: Code for reading h5ad files in R
2.1 years ago by AlexStar ▴ 200
0
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1
reply
10k
views
Comment: Comment: Code for reading h5ad files in R
2.1 years ago by AlexStar ▴ 200
3
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5
replies
10k
views
Code for reading h5ad files in R
r RNA-seq single-cell
updated 2.1 years ago by ★ 1.8k • written 2.1 years ago by ▴ 200
0
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1
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1.9k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.2 years ago by AlexStar ▴ 200
0
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1
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1.9k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.2 years ago by AlexStar ▴ 200
0
votes
0
replies
1.9k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.2 years ago by AlexStar ▴ 200
0
votes
8
replies
1.9k
views
Understaning the result of Meta-analysis of differential expression across datasets
r differential-expression genes
updated 2.2 years ago by 22k • written 2.2 years ago by ▴ 200
0
votes
0
replies
2.2k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.2 years ago by AlexStar ▴ 200
0
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1
reply
2.2k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.2 years ago by AlexStar ▴ 200
0
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1
reply
2.2k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.2 years ago by AlexStar ▴ 200
0
votes
1
reply
2.2k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.2 years ago by AlexStar ▴ 200
150 results • Page 1 of 3
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