Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
16 results • Page
1 of 1
Sort: Views
Rank
Views
Votes
Replies
2
votes
2
replies
822
views
Accessing particular gene set with msigdbr on R
GSEA
R
msigdbr
updated 21 hours ago by
Jaber
▴ 20 • written 2.2 years ago by
Aryan
▴ 40
2
votes
4
replies
187
views
How do N's in DNA sequences affect multi-sequence alignments for PCR assay testing?
multi-sequence
PCR
alignment
3 hours ago by
Ryan
• 0
0
votes
2
replies
180
views
Understanding IGV
VCF
IGV
BAM
WGS
19 hours ago by
zizigolu
★ 4.3k
3
votes
3
replies
163
views
Tutorial:
Parallel AUGUSTUS Execution via GNU Parallel
augustus
genome
ngs
parallel
updated 6 hours ago by
GenoMax
146k • written 17 hours ago by
Vijith
▴ 40
0
votes
2
replies
136
views
Filtering the vcf file
vcf
4 hours ago by
trezini
• 0
0
votes
3
replies
134
views
samtools BGZF block error
samtools
updated 11 hours ago by
Pierre Lindenbaum
164k • written 13 hours ago by
Novice
• 0
0
votes
0
replies
86
views
News:
Course - RNA Sequencing Data with R/Bioconductor
R
Bioconductor
RNA-seq
Differential-Expression-Analysis
updated 17 hours ago by
Ram
44k • written 1 day ago by
carlopecoraro2
★ 2.6k
0
votes
1
reply
62
views
Clinvar Filter
human
genome
vcf
clinvar
updated 3 hours ago by
GenoMax
146k • written 4 hours ago by
shabbas12
▴ 10
0
votes
0
replies
55
views
How to get the information for plotting methylation percentage along genomic regions
methylKit
genomation
DMRs
bismark
12 hours ago by
Sofia
• 0
0
votes
1
reply
54
views
Challenges with Parallelizing BUSCO for Phylogenetic Tree Construction on Large Genome Dataset
Busco
HPC
Slurm
Script
updated 3 hours ago by
GenoMax
146k • written 3 hours ago by
Mir-Mammad
• 0
0
votes
2
replies
48
views
How to count the number and proportion of different barcode combinations in DNA sequencing results
data
DNA
anlaysis
sequencing
barcode
updated 57 minutes ago by
dsull
★ 6.9k • written 3 hours ago by
tulip
• 0
0
votes
0
replies
38
views
MAF file visualization on UCSC genome browser Custom Track
MAF
track
cactus
UCSC
custom
6 hours ago by
Santex
• 0
0
votes
0
replies
36
views
DiffBind ProfilePlot Having High Wide High Signals
DiffBind
ATAC-seq
5 hours ago by
B.N.
▴ 10
0
votes
0
replies
20
views
ATAC-seq peaks centered between TSS and TES
atac
atacseq
enrichmentgraph
computematrix
tssenrichment
2 hours ago by
buffealo
▴ 110
0
votes
0
replies
16
views
News:
Introduction to CRISPR-Cas9 course
GenomeEditing
Crispr
Evolution
1 hour ago by
carlopecoraro2
★ 2.6k
0
votes
1
reply
6
views
SRAtoolkit --split-files output
sratoolkit
sra
fastq
accession
updated 5 minutes ago by
GenoMax
146k • written 13 minutes ago by
tony_88888
• 0
16 results • Page
1 of 1
Recent Votes
Comment: How do N's in DNA sequences affect multi-sequence alignments for PCR assay testi
Comment: Parallel AUGUSTUS Execution via GNU Parallel
Answer: Parallel AUGUSTUS Execution via GNU Parallel
Answer: Parallel AUGUSTUS Execution via GNU Parallel
Comment: TCGA Biolinks code issue
Answer: Does vg provides an api?
Answer: Where can I find mouse Gene MatriX file format (GMT)?
Recent Locations •
All
United Kingdom,
2 minutes ago
Greece,
4 minutes ago
London,
5 minutes ago
Türkiye,
8 minutes ago
United States,
12 minutes ago
Australia,
15 minutes ago
Norway,
21 minutes ago
Recent Awards •
All
Popular Question
to
tony_88888
• 0
Scholar
to
Pierre Lindenbaum
164k
Popular Question
to
tulip
• 0
Popular Question
to
nuorain
▴ 20
Centurion
to
sansan96
▴ 130
Popular Question
to
mropri
▴ 160
Popular Question
to
anasjamshed
▴ 140
Recent Replies
Answer: SRAtoolkit --split-files output
by
GenoMax
146k
`_1` file is the Illumina barcode for the sample, which is not used by cellranger.<br> `_2` file is the Cellbarcode + UMI<br> `_3` is the…
Comment: How to count the number and proportion of different barcode combinations in DNA
by
dsull
★ 6.9k
I have no idea what you’re asking. “185 base sequences”? — i have no idea what that means; do you mean there are 185 possible barcodes? Whe…
Comment: How to count the number and proportion of different barcode combinations in DNA
by
GenoMax
146k
Show us a few examples of reads. Since you said `barcode` I assume these are `in-line` in the sequencing read. What is the length of these …
Comment: Clinvar Filter
by
GenoMax
146k
Get a BED file of the promoter genomes and then use `bedtools intersect` (https://bedtools.readthedocs.io/en/latest/content/tools/intersect…
Comment: Challenges with Parallelizing BUSCO for Phylogenetic Tree Construction on Large
by
GenoMax
146k
A better option is to submit separate SLURM jobs for each genome. Using a `for` loop inside a single SLURM job is not efficient. Instead do…
Comment: How do N's in DNA sequences affect multi-sequence alignments for PCR assay testi
by
Ryan
• 0
Thanks! I will check with him and see if this works for him.
Comment: Filtering the vcf file
by
trezini
• 0
I understand how max-depth works, but I asked about max-idepth, indelgap and snpgap
Comment: Parallel AUGUSTUS Execution via GNU Parallel
by
GenoMax
146k
Start here: https://www.nextflow.io/ <!-- this is nothing -->
Comment: Parallel AUGUSTUS Execution via GNU Parallel
by
Vijith
▴ 40
Thank you so much, Dr. Lindenbaum, for the valuable comment. I'm not quite experienced in nextflow, but I like to test this out. Can you pr…
Comment: samtools BGZF block error
by
Pierre Lindenbaum
164k
> I cannot use it in anyway? you shouldn't. Run `samtools view -c in.bam ` on this file, and you should get the same error if I'm not wr…
Comment: Filtering the vcf file
by
Medhat
9.8k
I hope this may help: https://www.biostars.org/p/99940/#99958 For the depth part, let us assume we used the following command `bcftools …
Comment: samtools BGZF block error
by
Novice
• 0
Pierre, thank you. When you say broken/corrupted does it mean I cannot use it in anyway? i was able to run samtools mpileup just this week …
Answer: samtools BGZF block error
by
Pierre Lindenbaum
164k
your file input.bam is broken/corrupted. There is nothing you can do but regenerating this file.
Answer: Parallel AUGUSTUS Execution via GNU Parallel
by
Pierre Lindenbaum
164k
Nice, but you'd better learn to use a workflow manager like snakemake or nextflow. See NF below (not tested): ``` workflow { c…
Comment: Understanding IGV
by
zizigolu
★ 4.3k
I am very new to IGV I am not sure how to do that I took several screenshot because I do not know which part is the mutation I want
Traffic: 986 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6