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0
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0
replies
482
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FilterMutectCalls mutect2
gatk mutect2
16 months ago by Varun Gupta ★ 1.3k
29
votes
4
replies
25k
views
Bwa Mem -M Option
updated 2.3 years ago by • 0 • written 10.2 years ago by ★ 1.3k
0
votes
0
replies
17k
views
Comment: Comment: survfit(Surv()) P-value interpretation for 3 survival curves?
2.7 years ago by Varun Gupta ★ 1.3k
13
votes
9
replies
7.9k
views
Read Counts For Genes
read counts
updated 3.5 years ago by ▴ 130 • written 12.2 years ago by ★ 1.3k
1
vote
2
replies
2.0k
views
Bowtie1 Options For Mirna
mirna
updated 3.5 years ago by 20 • written 10.3 years ago by ★ 1.3k
7
votes
4
replies
16k
views
Wiggle File 2 Bed File
wiggle format conversion bed
updated 3.8 years ago by 20 • written 12.5 years ago by ★ 1.3k
0
votes
0
replies
5.6k
views
Comment: C: bowtie1 -m --best --strata options
updated 4.4 years ago by 44k • written 10.0 years ago by ★ 1.3k
0
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0
replies
17k
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Comment: C: Mismatch Option In Bowtie2
updated 4.4 years ago by 44k • written 11.0 years ago by ★ 1.3k
0
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1
reply
6.6k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 4.5 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
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0
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6.6k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 4.5 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
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1
reply
13k
views
Comment: C: padj value in DEseq package
updated 4.5 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
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1
reply
6.3k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
updated 4.6 years ago by 44k • written 8.8 years ago by ★ 1.3k
0
votes
0
replies
7.6k
views
Answer: A: Customize IGV coverage track in R
updated 4.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
1
vote
2
replies
4.0k
views
Tophat Alignment Score And Parameters
tophat2
updated 17 months ago by 44k • written 11.2 years ago by ★ 1.3k
0
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1
reply
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
0
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3
replies
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
0
votes
0
replies
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
0
votes
1
reply
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
0
votes
2
replies
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
1
vote
1
reply
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
0
votes
1
reply
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.3k
17
votes
4
replies
6.0k
views
fastq file on the basis of read length
fastq
updated 2.6 years ago by 44k • written 10.0 years ago by ★ 1.3k
1
vote
1
reply
2.4k
views
Filtering reads on the basis of percentage of ambiguous(N's) characters
fastq RNA-Seq filter
updated 6.0 years ago by 162k • written 6.0 years ago by ★ 1.3k
2
votes
8
replies
7.7k
views
Picard Mark Duplicates
picard markduplicates
updated 6.0 years ago by ▴ 90 • written 6.2 years ago by ★ 1.3k
0
votes
0
replies
7.7k
views
Comment: C: Picard Mark Duplicates
6.2 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
7.7k
views
Comment: C: Picard Mark Duplicates
6.2 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
7.7k
views
Comment: C: Picard Mark Duplicates
6.2 years ago by Varun Gupta ★ 1.3k
1
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0
replies
2.7k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
6.2 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
2.7k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
6.2 years ago by Varun Gupta ★ 1.3k
6
votes
4
replies
2.7k
views
genomeCoverageBed for per nucleotide coverage
bedtools
updated 6.2 years ago by 88k • written 6.2 years ago by ★ 1.3k
4
votes
12
replies
4.3k
views
Saving IGV images for bigwig files
igv bigwig
updated 6.4 years ago by 14k • written 6.4 years ago by ★ 1.3k
0
votes
1
reply
4.3k
views
Comment: C: Saving IGV images for bigwig files
6.4 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
4.3k
views
Comment: C: Saving IGV images for bigwig files
6.4 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
4.3k
views
Comment: C: Saving IGV images for bigwig files
6.4 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
4.3k
views
Comment: C: Saving IGV images for bigwig files
6.4 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
61k
views
Comment: C: How To Efficiently Parse A Huge Fastq File?
6.4 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
6.8k
views
Comment: C: Any tools to quantify intron retention in RNAseq data?
6.4 years ago by Varun Gupta ★ 1.3k
4
votes
4
replies
11k
views
Rpkm Calculation
rpkm
updated 6.7 years ago by 20 • written 12.3 years ago by ★ 1.3k
0
votes
1
reply
3.2k
views
Comment: C: querying blast database for rna seq reads
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
3.2k
views
Comment: C: querying blast database for rna seq reads
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
3.2k
views
Comment: C: querying blast database for rna seq reads
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
3.2k
views
Comment: C: querying blast database for rna seq reads
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
9
replies
3.2k
views
querying blast database for rna seq reads
blast blastn RNA-Seq
updated 6.8 years ago by 143k • written 6.8 years ago by ★ 1.3k
0
votes
0
replies
6.8k
views
Comment: Comment: Any tools to quantify intron retention in RNAseq data?
updated 2.8 years ago by 44k • written 6.9 years ago by ★ 1.3k
0
votes
0
replies
2.0k
views
Comment: C: exon quantification for tissue samples
7.3 years ago by Varun Gupta ★ 1.3k
2
votes
2
replies
2.0k
views
exon quantification for tissue samples
RNA-Seq exon count splice
updated 7.3 years ago by 7.6k • written 7.3 years ago by ★ 1.3k
13
votes
17
replies
11k
views
8 follow
cutadapt for trimming reads to specific length
cutadapt trim-galore
updated 3 months ago by ▴ 140 • written 7.7 years ago by ★ 1.3k
0
votes
1
reply
2.8k
views
genomeCoverageBed : for fixed size bins
bedtools
updated 7.4 years ago by ▴ 600 • written 7.4 years ago by ★ 1.3k
0
votes
0
replies
11k
views
Comment: C: cutadapt for trimming reads to specific length
7.7 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
11k
views
Comment: C: cutadapt for trimming reads to specific length
7.7 years ago by Varun Gupta ★ 1.3k
215 results • Page 1 of 5
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