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1.7k
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Comment: Comment: dittoHeatmap; adding column labels on the heatmap
12 months ago by Varun Gupta ★ 1.3k
0
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1
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1.7k
views
Comment: Comment: dittoHeatmap; adding column labels on the heatmap
12 months ago by Varun Gupta ★ 1.3k
1
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6
replies
1.7k
views
dittoHeatmap; adding column labels on the heatmap
pheatmap ComplexHeatmap dittoHeatmap
updated 12 months ago by ★ 19k • written 12 months ago by ★ 1.3k
0
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1
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1.2k
views
Comment: Comment: Removing features from RNA assay in seurat
12 months ago by Varun Gupta ★ 1.3k
2
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3
replies
1.2k
views
Removing features from RNA assay in seurat
R SEURAT sc-RNA-Seq
updated 12 months ago by ▴ 870 • written 12 months ago by ★ 1.3k
0
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0
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1.9k
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Comment: Comment: Dealing with 2 different layers of counts within RNA assay in seurat
13 months ago by Varun Gupta ★ 1.3k
1
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2
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1.9k
views
Dealing with 2 different layers of counts within RNA assay in seurat
R seurat
updated 13 months ago by ★ 3.1k • written 13 months ago by ★ 1.3k
2
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4
replies
1.2k
views
When to use integration with scRNASeq
R SEURAT scRNA-seq
updated 13 months ago by 6.5k • written 13 months ago by ★ 1.3k
0
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1
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1.2k
views
Comment: Comment: When to use integration with scRNASeq
13 months ago by Varun Gupta ★ 1.3k
1
vote
1
reply
737
views
Extracting column from one seurat object based on common column and adding to the other object
R SEURAT
updated 13 months ago by ★ 3.1k • written 13 months ago by ★ 1.3k
0
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0
replies
815
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FilterMutectCalls mutect2
gatk mutect2
2.8 years ago by Varun Gupta ★ 1.3k
29
votes
4
replies
27k
views
Bwa Mem -M Option
updated 3.6 years ago by • 0 • written 11.6 years ago by ★ 1.3k
0
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0
replies
21k
views
Comment: Comment: survfit(Surv()) P-value interpretation for 3 survival curves?
4.0 years ago by Varun Gupta ★ 1.3k
13
votes
9
replies
9.1k
views
Read Counts For Genes
read counts
updated 4.9 years ago by ▴ 130 • written 13.6 years ago by ★ 1.3k
1
vote
2
replies
2.5k
views
Bowtie1 Options For Mirna
mirna
updated 4.9 years ago by 20 • written 11.7 years ago by ★ 1.3k
7
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4
replies
17k
views
Wiggle File 2 Bed File
wiggle format conversion bed
updated 5.2 years ago by 20 • written 13.8 years ago by ★ 1.3k
0
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0
replies
6.6k
views
Comment: C: bowtie1 -m --best --strata options
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.3k
0
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0
replies
18k
views
Comment: C: Mismatch Option In Bowtie2
updated 5.8 years ago by 45k • written 12.4 years ago by ★ 1.3k
0
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1
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7.7k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.3k
0
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0
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7.7k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.3k
0
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1
reply
14k
views
Comment: C: padj value in DEseq package
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.3k
0
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1
reply
7.8k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
updated 6.0 years ago by 45k • written 10.2 years ago by ★ 1.3k
0
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0
replies
9.0k
views
Answer: A: Customize IGV coverage track in R
updated 6.1 years ago by 45k • written 11.4 years ago by ★ 1.3k
1
vote
2
replies
4.5k
views
Tophat Alignment Score And Parameters
tophat2
updated 2.8 years ago by 45k • written 12.6 years ago by ★ 1.3k
0
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1
reply
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
0
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3
replies
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
0
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0
replies
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
0
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1
reply
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
0
votes
2
replies
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
1
vote
1
reply
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
0
votes
1
reply
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 6.4 years ago by 45k • written 10.8 years ago by ★ 1.3k
17
votes
4
replies
6.7k
views
fastq file on the basis of read length
fastq
updated 4.0 years ago by 45k • written 11.3 years ago by ★ 1.3k
1
vote
1
reply
2.6k
views
Filtering reads on the basis of percentage of ambiguous(N's) characters
fastq RNA-Seq filter
updated 7.4 years ago by 166k • written 7.4 years ago by ★ 1.3k
2
votes
8
replies
9.1k
views
Picard Mark Duplicates
picard markduplicates
updated 7.4 years ago by ▴ 90 • written 7.5 years ago by ★ 1.3k
0
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0
replies
9.1k
views
Comment: C: Picard Mark Duplicates
7.5 years ago by Varun Gupta ★ 1.3k
0
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1
reply
9.1k
views
Comment: C: Picard Mark Duplicates
7.5 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
9.1k
views
Comment: C: Picard Mark Duplicates
7.5 years ago by Varun Gupta ★ 1.3k
1
vote
0
replies
3.2k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
7.6 years ago by Varun Gupta ★ 1.3k
0
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1
reply
3.2k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
7.6 years ago by Varun Gupta ★ 1.3k
6
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4
replies
3.2k
views
genomeCoverageBed for per nucleotide coverage
bedtools
updated 7.6 years ago by 89k • written 7.6 years ago by ★ 1.3k
4
votes
12
replies
5.9k
views
Saving IGV images for bigwig files
igv bigwig
updated 7.7 years ago by 15k • written 7.8 years ago by ★ 1.3k
0
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1
reply
5.9k
views
Comment: C: Saving IGV images for bigwig files
7.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
5.9k
views
Comment: C: Saving IGV images for bigwig files
7.8 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
5.9k
views
Comment: C: Saving IGV images for bigwig files
7.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
5.9k
views
Comment: C: Saving IGV images for bigwig files
7.8 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
70k
views
Comment: C: How To Efficiently Parse A Huge Fastq File?
7.8 years ago by Varun Gupta ★ 1.3k
0
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1
reply
7.8k
views
Comment: C: Any tools to quantify intron retention in RNAseq data?
7.8 years ago by Varun Gupta ★ 1.3k
4
votes
4
replies
12k
views
Rpkm Calculation
rpkm
updated 8.1 years ago by 20 • written 13.7 years ago by ★ 1.3k
0
votes
1
reply
4.1k
views
Comment: C: querying blast database for rna seq reads
8.2 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
4.1k
views
Comment: C: querying blast database for rna seq reads
8.2 years ago by Varun Gupta ★ 1.3k
225 results • Page 1 of 5
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