I'm trying to convert a list of RefSeq IDs to the Gene Symbol . . . I can do it for Ensembl using http://genome.ucsc.edu/cgi-bin/hgTables [Track -> Ensembl Genes : Table -> ensemblToGeneName]
I can import a list like:
ENSMUST00000000219 ENSMUST00000000450 ENSMUST00000001156 ENSMUST00000001319 ENSMUST00000001559
and get a table that looks like this:
ENSMUST00000000219 Th ENSMUST00000000450 Pparg ENSMUST00000001156 Cfp ENSMUST00000001319 Efnb2 ENSMUST00000001559 Itfg2
and life is super easy . . . I can't figure out how to do something similar with RefSeq IDs!
I tried using http://idconverter.bioinfo.cnio.es/IDconverter.php which worked the best out of all the converters suggested by http://www.shodhaka.com/cgi-bin/startbioinfo/simpleresources.pl?tn=Gene%20ID%20conversion&sort=Rank%20by%20usage%20frequency but it wasn't recognizing some of the transcripts and its really annoying
Does anyone know how to import a list of RefSeq genes:
NM_001081045 NM_027801 NM_001267620 NM_028121 NM_001167748
and get out the Gene Symbols:
Kansl1 2610015P09Rik Ankzf1 Adpgk Egfem1
Please search this site for the many similar questions and answers, which explain how to use BioMart.
Gene ID conversion tool