Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
2 results • Page
1 of 1
Sort: replies
Rank
Views
Votes
Replies
1
vote
4
replies
597
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 6 days ago by
ATpoint
78k • written 23 days ago by
Paulo
• 0
1
vote
1
reply
260
views
Forum:
want to work in open source project/project in bioinformatics
bioinformatics
project
updated 5 days ago by
Matthias Zepper
4.2k • written 5 days ago by
Afeef
• 0
2 results • Page
1 of 1
Recent Votes
WGCNA tutorial docs needed: Horvath Lab site down
Answer: Extracting only soft/hard clipped reads from a bam file
Answer: Bulk and Single Cell RNA-seq online course
Answer: Is there a need to batch correct FPKM or TPM values for within sample comparison
A: RNA-Seq post-DGE "Diagnostic tests"
Comment: p-value combination methods
Comment: p-value combination methods
Recent Locations •
All
United States,
just now
United States,
just now
United States,
2 minutes ago
Austria,
3 minutes ago
United States,
5 minutes ago
United States,
6 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
6 minutes ago
Recent Awards •
All
Popular Question
to
wiscoyogi
▴ 40
Popular Question
to
Shicheng Guo
★ 9.3k
Popular Question
to
prasundutta87
▴ 660
Popular Question
to
massa.kassa.sc3na
▴ 590
Commentator
to
dsull
★ 5.1k
Scholar
to
Xian
▴ 60
Popular Question
to
sebabiokr
▴ 10
Recent Replies
Answer: Loftee no splice site annotations
by
AMARU
• 0
Hey, did you solve it? I am having a very similar issue. Thanks
Answer: Bulk and Single Cell RNA-seq online course
by
swbarnes2
13k
I'd start by getting tutorials for R libraries like DESeq, EdgeR, Seurat, etc, and learn by doing.
Answer: gene set enrichment analysis- by enrichGO
by
Istvan Albert
99k
Some analyses compare a subset of genes to a background. In those cases you would need to select a subset via some attributes like pvalues …
Comment: Ipyrad de novo for variant calling
by
Betsy
• 0
Were you ever able to resolve this error? I am having the exact same problem trying to run ipyrad on already demultiplexed fq.gz files
Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
by
ATpoint
78k
Depends on the analysis. If you do some sort of gene ratio calculation then probably yes. Batch correction does not affect all genes equall…
Answer: WGCNA tutorial docs needed: Horvath Lab site down
by
Rebecca
• 0
If there is a copy of the wgcna pdfs available please let me know!
Comment: How to filter .fasta file based on conditional statement
by
Brian Bushnell
19k
You're using BBTools v39.01. I just added the new flag in 39.06 :)
Answer: Where do these snpeff annotation come from?
by
Istvan Albert
99k
in principle you can do a snpeff dump hg38 that will generate a text output of the content of the database. in practice when I …
Comment: Can FPKM be used to create bar graphs for DEGs?
by
junli1988
• 0
LOL...It's a CSV file, and that's all I have in the folder. I agree that it is indeed the stuff of nightmares. But what can I do? It's not …
Answer: Is there a need to batch correct FPKM or TPM values for within sample comparison
by
jv
★ 1.2k
My assumption is that intra-sample comparisons should not require batch effect correction.
Comment: Tools or R / Python packages to perfom ML models
by
Michael
53k
If you have a lot of training data with class labels, as your dataset seems to be you could turn it into an ML classification problem. Gene…
Comment: p-value combination methods
by
Istvan Albert
99k
https://www.biostars.org/u/41501/ please don't delete post that have additional content associated with them having assistance from the C…
Comment: In what case there are RR reads but no LL reads when detect inversions using IGV
by
Istvan Albert
99k
I think a view as pairs is much cleaner as it shows the actual pairing and how they cross the gap. In the view you show it is not clear whe…
Answer: Extracting only soft/hard clipped reads from a bam file
by
Pierre Lindenbaum
158k
only soft clipped reads (but should be ok in most cases, as in bwa only secondary reads are hard clipped): samtools view -O BAM -o ou…
Comment: In what case there are RR reads but no LL reads when detect inversions using IGV
by
Jingfang
• 0
Thanks for your reply. The IGV image I show used color alignments by pair orientation, and view mate region in split screen. Blue reads …
Traffic: 1920 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6