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Postdocs in Anaerobic Microbial Consortia – DTU Chemical Engineering
Microbiology
microbiology
Biochemistry
Anaerobic
4 days ago by
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The Biostar Herald for Monday, December 11, 2023
Comment: GATK GetPileupSummaries Java heap space
The Biostar Herald for Monday, December 11, 2023
A: How To Sort Sam File
Answer: GATK GetPileupSummaries Java heap space
Answer: Autocompleting paths within scripts
Are Variable Features ranked in seurat?
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Comment: How should I run ssgsea analysis ?
by
Ram
41k
Just add a statement to your comments stating that the text was generated using ChatGPT - it is a good tool but it's not aware of its own s…
Comment: Autocompleting paths within scripts
by
DanielEB_fisk
▴ 20
Yep, sorry, you are right it is not a bioinformatics question. I asked here because it relates with the work we do anyway.
Comment: autodock vina on mac
by
Ram
41k
That section is for after you have virtualbox set up. You may have to run a really old version of macOS within the virtualbox, so be prepar…
Comment: ChatGPT optimized for bioinformatics questions
by
Ram
41k
I understand. The purpose of my comment is to serve as feedback.
Comment: How can I obtain the DNA sequences of each CDS for several genbank files?
by
Ram
41k
Look into passing command line parameters to a python script. You can pass the input file name as a parameter to the script and execute the…
Answer: Autocompleting paths within scripts
by
Michael
53k
Not really a Bioinformatics question but generally very useful: [vim can do that][1] [type some prefix of path]<Ctrl-x><Ctrl-f> This…
Comment: How can I obtain the DNA sequences of each CDS for several genbank files?
by
Raphaëlle
• 0
Hello, Thank you very much for your quick reply. That was indeed the issue! Another question: is there a simple way of automating this …
Answer: Cluster sub-set analysis using Seurat
by
j.gleixner
▴ 10
There now is also `Seurat::FindSubCluster`
Comment: How can i control the cluster number in scRNASeq clustering by Seurat package
by
j.gleixner
▴ 10
There is now also Seurat::BuildClusterTree that makes this easier.
Answer: How can i control the cluster number in scRNASeq clustering by Seurat package
by
j.gleixner
▴ 10
If you want to get a certain number of clusters without resorting to trying different settings for the resolution parameter, you can firs…
Answer: How to speed-up to contruct phylogenetic tree
by
Nelo
▴ 20
I will also try this `fasttree`
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha
by
1125195245
• 0
I tried using bowtie2's --reorder command to output a sam file for each of the two files, and then used both sam files to build the matrix,…
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴ 20
I used MEGA CC (comand line option) but there is no option to specify threads in its `--help` manual . And default thread is 4
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴ 20
The average length of fasta sequences is ~300aa length. I can't exclude any sequences as I have to provide them nomenclature aslo on the ba…
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴ 20
I used Raxml for a trial fasta file of about only 33 sequences as: `raxmlHPC-PTHREADS-AVX -f a -T 80 -m PROTGAMMAWAG -n test1 -s bittergou…
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