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14 results • Page
1 of 1
Sort: Votes
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163
views
snakemake Unexpected keyword bam in rule definition
snakemake
5 hours ago by
Aidand
• 0
1
vote
1
reply
191
views
SNP calling
SNPcalling
updated 4 hours ago by
Fabio Marroni
★ 2.9k • written 1 day ago by
abozorgmehr1985
▴ 10
0
votes
3
replies
229
views
ceres score in crispr screen
ceres
crispr
ngs
10 hours ago by
edus_bioinfo
▴ 20
0
votes
2
replies
211
views
Network analysis for two Factors
score
protein
network
chip-seq
analysis
5 hours ago by
Ankit
▴ 390
0
votes
0
replies
20
views
Filter InterProScan output for a specific function
interproscan
annotation
3 hours ago by
Purger
• 0
0
votes
5
replies
301
views
PLINK2 selecting variants based on INFO score
plink2
updated 2 hours ago by
chrchang523
9.9k • written 2 days ago by
m.c.roozen
• 0
0
votes
1
reply
41
views
f-index in treemix
treemix
introgression
f-index
2 hours ago by
kk.mahsa
▴ 140
0
votes
1
reply
120
views
How to find the most frequent alternative-splicing event from DEXSEQ data?
DESEQ
RNA-SEQ
DEXSEQ
updated 1 hour ago by
i.sudbery
16k • written 1 day ago by
STARDUST
• 0
0
votes
2
replies
206
views
RNA Editing data from RNA-seq
Editing
RNA
updated 1 hour ago by
i.sudbery
16k • written 1 day ago by
Genetics
• 0
0
votes
0
replies
16
views
MetaboAnalyst: Interpreting Enrichment Analysis Results
enrichment
metabolomics
1 hour ago by
eva_u
▴ 10
0
votes
0
replies
9
views
Set Y limits for ggplot with sec.axis
rstudio
ggplot
1 hour ago by
JirMan
• 0
0
votes
0
replies
102
views
Statistical test on two phylogenetically remote groups
phylogeny
ANOVA
21 hours ago by
liorglic
★ 1.1k
0
votes
0
replies
92
views
why count_matrix.csv generated by "prepDE.py3" showed unidentified IDs
Stringtie
RNA-seq
28 minutes ago by
Pegasus
▴ 40
0
votes
0
replies
97
views
Issues Using DMRcate and rmSNPandCH
DMRcate
R
20 hours ago by
Indira
• 0
14 results • Page
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Recent Replies
Comment: DESeq2 results function runs very slow on Windows 10
by
i.sudbery
16k
This would also explain the performance difference - the code is running on multiple cores on the Apple, but only a single core on Windows.
Comment: RNA Editing data from RNA-seq
by
i.sudbery
16k
You usually need DNA sequencing data as well as RNAseq data to identify RNA editing events.
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
by
i.sudbery
16k
What do you mean be "most frequent alternative splicing event"? Do you mean which type of change (cassette exon, alternative 5' splice-site…
Comment: High downstream gene expression
by
i.sudbery
16k
I don't see genes in this location on the standard sheep genome either. The image you've included above doesn't show the gene annotation. B…
Comment: f-index in treemix
by
kk.mahsa
▴ 140
I found the answer and I share it with you. setwd("directory/of/Treemix/results") source("plotting_funcs.R") get_f("…
Answer: Can Singularity be installed on a single-node server or does it have to be HPC?
by
ATpoint
68k
It's not the hardware setup (HPC, workstation, laptop, single-node server) that determines what can be installed or not, but the operating …
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
This isn't a matter of "know[ing] the inner workings of PLINK2". It's about clear communication and debugging practice. You never posted …
Comment: SNP calling
by
Fabio Marroni
★ 2.9k
No idea about the first error. I rarely used GATK, but I have a guess regarding the second error. 1) emit-ref-confidence = ERC, 2) the soft…
Comment: snakemake Unexpected keyword bam in rule definition
by
Aidand
• 0
I'm running version 7.18.1, the first line is missing a \ at the beginning but the first section of the file is just for setting up a log f…
Comment: Network analysis for two Factors
by
Ankit
▴ 390
Hi. Thanks for the response I tried to use gephi and cytoscape but since I have no experience with these tools I could not use it pro…
Answer: Virtual box
by
ATpoint
68k
Don't struggle with virtual machines. Use awindows Subsystem For Linux (WSL2) to habe a native Linux running within Windows. It's from Micr…
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I feel like I reproduced all the information I could, as I do not know the inner workings of PLINK2 and this is all I know of the problem. …
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
they didnt provide a good tutorial thats why i cannot determine whether i have problem in input files ps: but i cannot run the demo files
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
:) technical support. > my run is giving Error: Encountered internal Bowtie 2 exception (#1) Command: /Users/sudeeris/Downloads/bowtie2-…
Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
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