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Recent Replies
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A: How to extract a fasta sequence from a batch of multiple fasta genome files by
drdrnaveenkumar • 0
Hi all, I tried a way of using makeblastdb Accordingly ran makeblastdb -in AI1198.fasta -p...
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C: What's the best way to serve VCF data on web? by
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let me be clear: it's a **FILE** server, **not** a tool to query VCFs...
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C: What's the best way to serve VCF data on web? by
rbagnall • 1.5k
and another that is a web based front end for GEMINI database [https://academic.oup.com/bioinfor...
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C: What's the best way to serve VCF data on web? by
Pierre Lindenbaum ♦ 127k
as I said, it's pretty basic. pro: should work out of the box (no sql...) con: there will be ...
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C: What's the best way to serve VCF data on web? by
genomax ♦ 80k
Search brought up this: https://academic.oup.com/bib/article/18/5/774/2562769
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C: What's the best way to serve VCF data on web? by
genomax ♦ 80k
> Considering there will be thousands of VCFs, Will your solution scale to that level?
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C: How many samples are good to find significant targets using GISTIC? by
joyk2a • 20
Thanks, Kevin! I will try to do it.
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A: Python script for sequence alignment not running by
Mensur Dlakic • 4.2k
You probably need to delete these lines from `needleman_wunsch`: sm = read_submat_file(f) ...
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A: PLINK - Sample(s) present with no genotype data by
chrchang523 ♦ 6.7k
./. encodes a missing genotype.
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A: Why is hmmsearch only using the 1st HMM in a concatenated HMM database? by
Mensur Dlakic • 4.2k
`hmmsearch` is meant for searching single HMMs at a time against a database of sequences. If you ...
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C: Attempting to setup snakemake on a compute cluster by
malteherold • 30
Glad I could help and congratulations :)
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Bit-scores are not affected by `-Z`, only `E-value`.
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