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<prev • 61 results • page 1 of 3 • next >
7
votes
2
answers
187
views
2
answers
Finding closest downstream gene including overlap 3' ends
bedtools bedops written 10 weeks ago by jfelds11 • 20
0
votes
0
answers
592
views
0
answers
Average PhastCon score using bedops
software error bedops starch written 21 months ago by zwfanwz678 • 10 • updated 3 months ago by Biostar ♦♦ 20
7
votes
2
answers
245
views
7 follow
2
answers
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 5 months ago by bhuwankhatri11 • 20 • updated 5 months ago by Alex Reynolds ♦ 25k
1
vote
2
answers
332
views
2
answers
Stats on the overlapping length within two bed files
bedtools genome bedops written 5 months ago by beanavarro85 • 0 • updated 5 months ago by Alex Reynolds ♦ 25k
2
votes
1
answer
181
views
1
answer
Bedops --element-of misses elements
bedops --element-of written 6 months ago by rs • 40 • updated 6 months ago by Alex Reynolds ♦ 25k
0
votes
1
answer
235
views
1
answer
How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
bedops parallel convert2bed written 6 months ago by texaswhiskey1969 • 0 • updated 6 months ago by jean.elbers • 340
0
votes
0
answers
222
views
0
answers
How to crop gff feature into pieces when an overlap is found
bedtools annotation gff bedops genome written 6 months ago by rimjhim.roy.ch • 70
3
votes
1
answer
416
views
1
answer
FIMO output to bed
bedtools fimo meme bedops written 7 months ago by rbronste • 170 • updated 7 months ago by YaGalbi • 1.3k
1
vote
1
answer
311
views
1
answer
bedops gff2bed error
bedops gff2bed written 7 months ago by varsha619 • 70 • updated 7 months ago by Alex Reynolds ♦ 25k
4
votes
1
answer
202
views
1
answer
bedops -u does not work properly
bed bedops intersect written 7 months ago by Ming Tang • 2.3k • updated 7 months ago by Alex Reynolds ♦ 25k
0
votes
2
answers
286
views
2
answers
VCF to BED conversion error in BEDOPS
vcf bed bedops written 8 months ago by Shab86 • 220 • updated 8 months ago by Alex Reynolds ♦ 25k
6
votes
1
answer
441
views
1
answer
bedops vcf2bed core dump
bedops vcf2bed written 9 months ago by Ram ♦ 17k
5
votes
2
answers
428
views
2
answers
Recompile bedops with increased TOKENS_MAX_LENGTH
sort-bed bedops written 9 months ago by Ram ♦ 17k • updated 9 months ago by Alex Reynolds ♦ 25k
10
votes
3
answers
569
views
5 follow
3
answers
bedops vcf2bed eats up all allocated memory
hpc bedops vcf2bed written 9 months ago by Ram ♦ 17k
3
votes
4
answers
3.3k
views
4
answers
Intersect multiple bed and keep all fields
bedtools bed bedops written 3.0 years ago by user230613 • 260 • updated 9 months ago by ashleymaeconard • 0
0
votes
0
answers
367
views
0
answers
Merging bed intervals within a group
bedtools bed bedops written 12 months ago by EVR • 480
0
votes
0
answers
418
views
0
answers
Creating reproducible peak regions from multiple ChIP-seq studies
bedtools bedops written 14 months ago by James Ashmore • 2.5k • updated 12 months ago by Biostar ♦♦ 20
4
votes
1
answer
557
views
1
answer
Closest gene to set of intervals
bedtools bedops written 13 months ago by rbronste • 170 • updated 13 months ago by Rohit • 1.3k
6
votes
1
answer
1.2k
views
1
answer
Merge bed files, keep the peak count
bedtools bedops chip-seq written 2.2 years ago by rioualen • 280 • updated 14 months ago by Biostar ♦♦ 20
1
vote
1
answer
473
views
1
answer
BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 14 months ago by rbronste • 170 • updated 14 months ago by Alex Reynolds ♦ 25k
1
vote
1
answer
428
views
1
answer
Peak ident near highly expressed genes
bedops chip-seq rna-seq written 14 months ago by rbronste • 170
1
vote
1
answer
603
views
1
answer
closest-Features or closestBed Output to find genes downstream of coordinates
gene bedtools bedops sequence written 15 months ago by subramaniyam.ek • 0 • updated 15 months ago by Alex Reynolds ♦ 25k
1
vote
0
answers
538
views
0
answers
Splitting the Spliced reads from genome Alignment
bedtools bed bedops bam spliced_reads written 15 months ago by EVR • 480
0
votes
0
answers
426
views
0
answers
bedops wig2bed issue
bedops wig2bed written 15 months ago by rbronste • 170
2
votes
0
answers
394
views
0
answers
Bedops --difference errors
bedops chip-seq written 15 months ago by rbronste • 170 • updated 15 months ago by Alex Reynolds ♦ 25k
7
votes
3
answers
707
views
3
answers
Output bed file region sizes as histogram
bedtools bed bedops histogram written 15 months ago by mmmmcandrew • 60 • updated 15 months ago by Alex Reynolds ♦ 25k
2
votes
1
answer
681
views
1
answer
convert2bed issue with large input file?
bedops convert2bed bam2bed written 16 months ago by cpak1981 • 100
5
votes
1
answer
706
views
1
answer
How to assign Active Enhancer to every genes within 10 kb region?
enhancer bedops closest written 18 months ago by Bioinformatist Newbie • 230 • updated 18 months ago by Alex Reynolds ♦ 25k
1
vote
0
answers
1.0k
views
5 follow
0
answers
Error executing bedops convert2bed
vcf bed bedops convert2bed written 19 months ago by Vijay Lakhujani ♦ 3.0k
1
vote
1
answer
610
views
1
answer
bedops returning NaN occupancies
bedops nan chip-seq written 19 months ago by chrisclarkson100 • 50 • updated 19 months ago by Alex Reynolds ♦ 25k
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