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<prev • 87 results • page 1 of 3 • next >
4
votes
1
answer
93
views
1
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Merge coordinates by gene ID
bedtools bed bedops bash written 3 days ago by r.tor • 40
1
vote
2
answers
1.4k
views
2
answers
BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 3.4 years ago by rbronste • 360 • updated 15 days ago by esimonova.me • 0
0
votes
0
answers
91
views
0
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Can BEDOps bedmap retain strand information?
bedops bedmap written 8 weeks ago by Tawny • 160
5
votes
1
answer
130
views
1
answer
BEDOPS bedmap - output with too many decimals
bedops bedmap written 9 weeks ago by Tawny • 160 • updated 9 weeks ago by Alex Reynolds ♦ 31k
2
votes
2
answers
166
views
2
answers
Extract exact match from bed files
bedtools bed bedops written 10 weeks ago by brown.annaleigh • 10 • updated 10 weeks ago by Alex Reynolds ♦ 31k
1
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0
answers
112
views
0
answers
Intersecting unbalanced BED files, normalizing for one
bedtools bedops written 3 months ago by LacquerHed • 0
0
votes
0
answers
224
views
0
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Putting bedtools in the path
bedtools bedops samtools written 4 months ago by A • 3.9k
0
votes
0
answers
132
views
0
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how can I extract intervals from bed file spanning a max larger interval in a windowed mode without disrupting intervals?
bedtools bed bedops sequencing written 6 months ago by serpalma.v • 40
2
votes
2
answers
269
views
2
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bedops sort-bed inconsistencies
sort-bed bedops written 7 months ago by RamRS ♦ 30k • updated 7 months ago by Alex Reynolds ♦ 31k
0
votes
0
answers
167
views
0
answers
Merge regions in a BED but only if they share the same value (copy number) in a column
bedtools bedops copy number written 9 months ago by Luca Beltrame • 220 • updated 9 months ago by ATpoint ♦ 40k
1
vote
0
answers
207
views
0
answers
Combining two BED files based on shared criteria
bedtools bed bedops interval written 11 months ago by rbronste • 360
9
votes
1
answer
331
views
1
answer
Limiting interval sizes with awk
bedtools bed bedops awk interval written 13 months ago by rbronste • 360
2
votes
1
answer
555
views
1
answer
Bamtobed paired mate error
bedtools bed bedops bamtobed written 13 months ago by rbronste • 360 • updated 13 months ago by ATpoint ♦ 40k
3
votes
2
answers
554
views
2
answers
ggplot density plot across bed file
R bedops ggplot density plot bed written 13 months ago by rbronste • 360 • updated 13 months ago by Nicolas Rosewick ♦ 9.2k
4
votes
1
answer
664
views
1
answer
Filtering BED file for interval length
bedtools bed bedops written 13 months ago by rbronste • 360
0
votes
0
answers
247
views
0
answers
Gene names from mixed location BED file
bedtools bed bedops annotations written 14 months ago by rbronste • 360
4
votes
1
answer
556
views
1
answer
bedops bedmap operation in python
python bedops bedmap written 18 months ago by Uday Rangaswamy • 130 • updated 16 months ago by Biostar ♦♦ 20
7
votes
2
answers
534
views
2
answers
Combine .bed files and keep columns / headers
bedtools bedops bedmap written 17 months ago by fr • 150 • updated 17 months ago by ATpoint ♦ 40k
8
votes
1
answer
598
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 20 months ago by star • 260 • updated 20 months ago by Biostar ♦♦ 20
7
votes
3
answers
3.0k
views
3
answers
Finding Chip Seq Overlaps with Bed files
bedtools chip-seq bedops bedmap written 4.9 years ago by morovatunc • 460
4
votes
1
answer
1.0k
views
1
answer
BEDOPS bedmap tool usage
bedops sequence bedmap dna written 22 months ago by Uday Rangaswamy • 130 • updated 22 months ago by Alex Reynolds ♦ 31k
1
vote
1
answer
642
views
1
answer
BEDOPS installation on MAC
assembly bedops written 23 months ago by MK2000 • 30 • updated 23 months ago by Alex Reynolds ♦ 31k
7
votes
5
answers
448
views
5 follow
5
answers
Pulling out interval adjoining regions
bedtools bed bedops interval written 23 months ago by rbronste • 360 • updated 23 months ago by Alex Reynolds ♦ 31k
0
votes
0
answers
392
views
0
answers
Closest features sort by set distance
bedtools bed bedops intervals written 23 months ago by rbronste • 360
1
vote
1
answer
616
views
1
answer
Read depth interval comparison
read depth bed bedops bam bedtools written 23 months ago by rbronste • 360 • updated 23 months ago by Pierre Lindenbaum ♦ 131k
3
votes
2
answers
662
views
2
answers
Extending BED intervals
bedtools bed bedops interval written 23 months ago by rbronste • 360 • updated 23 months ago by Alex Reynolds ♦ 31k
1
vote
1
answer
585
views
1
answer
BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 2.0 years ago by rbronste • 360
4
votes
2
answers
3.3k
views
2
answers
split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 4.7 years ago by 14134125465346445 • 3.5k • updated 2.1 years ago by RamRS ♦ 30k
2
votes
1
answer
705
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 2.1 years ago by Anand Rao • 320 • updated 2.1 years ago by Alex Reynolds ♦ 31k
7
votes
2
answers
569
views
2
answers
Finding closest downstream gene including overlap 3' ends
bedtools bedops written 2.4 years ago by jfelds11 • 20
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