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<prev • 88 results • page 1 of 3 • next >
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Problem with bedops starch
bedops starch written 8 days ago by cadley.nyulangone • 10 • updated 8 days ago by zx8754 ♦ 9.9k
4
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1
answer
184
views
1
answer
Merge coordinates by gene ID
bedtools bed bedops bash written 12 weeks ago by r.tor • 40
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2
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1.5k
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2
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BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 3.6 years ago by rbronste • 370 • updated 3 months ago by esimonova.me • 0
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0
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136
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Can BEDOps bedmap retain strand information?
bedops bedmap written 4 months ago by Tawny • 170
5
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1
answer
176
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1
answer
BEDOPS bedmap - output with too many decimals
bedops bedmap written 5 months ago by Tawny • 170 • updated 5 months ago by Alex Reynolds ♦ 31k
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2
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225
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2
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Extract exact match from bed files
bedtools bed bedops written 5 months ago by brown.annaleigh • 10 • updated 5 months ago by Alex Reynolds ♦ 31k
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157
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Intersecting unbalanced BED files, normalizing for one
bedtools bedops written 6 months ago by LacquerHed • 0
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362
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Putting bedtools in the path
bedtools bedops samtools written 7 months ago by A • 3.9k
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164
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how can I extract intervals from bed file spanning a max larger interval in a windowed mode without disrupting intervals?
bedtools bed bedops sequencing written 9 months ago by serpalma.v • 60
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2
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305
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2
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bedops sort-bed inconsistencies
sort-bed bedops written 10 months ago by _r_am ♦ 32k • updated 10 months ago by Alex Reynolds ♦ 31k
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207
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Merge regions in a BED but only if they share the same value (copy number) in a column
bedtools bedops copy number written 12 months ago by Luca Beltrame • 220 • updated 12 months ago by ATpoint ♦ 44k
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0
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232
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Combining two BED files based on shared criteria
bedtools bed bedops interval written 14 months ago by rbronste • 370
9
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1
answer
368
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1
answer
Limiting interval sizes with awk
bedtools bed bedops awk interval written 16 months ago by rbronste • 370
2
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1
answer
704
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1
answer
Bamtobed paired mate error
bedtools bed bedops bamtobed written 16 months ago by rbronste • 370 • updated 16 months ago by ATpoint ♦ 44k
3
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2
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648
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2
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ggplot density plot across bed file
R bedops ggplot density plot bed written 16 months ago by rbronste • 370 • updated 16 months ago by Nicolas Rosewick ♦ 9.3k
4
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1
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821
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1
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Filtering BED file for interval length
bedtools bed bedops written 16 months ago by rbronste • 370
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0
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280
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0
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Gene names from mixed location BED file
bedtools bed bedops annotations written 17 months ago by rbronste • 370
4
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1
answer
633
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1
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bedops bedmap operation in python
python bedops bedmap written 21 months ago by Uday Rangaswamy • 150 • updated 19 months ago by Biostar ♦♦ 20
7
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2
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583
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2
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Combine .bed files and keep columns / headers
bedtools bedops bedmap written 20 months ago by fr • 150 • updated 20 months ago by ATpoint ♦ 44k
8
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1
answer
633
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1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 22 months ago by star • 270 • updated 22 months ago by Biostar ♦♦ 20
7
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3
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3.2k
views
3
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Finding Chip Seq Overlaps with Bed files
bedtools chip-seq bedops bedmap written 5.2 years ago by morovatunc • 460
4
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1
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1.1k
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1
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BEDOPS bedmap tool usage
bedops sequence bedmap dna written 2.1 years ago by Uday Rangaswamy • 150 • updated 2.1 years ago by Alex Reynolds ♦ 31k
1
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1
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687
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1
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BEDOPS installation on MAC
assembly bedops written 2.1 years ago by MK2000 • 30 • updated 2.1 years ago by Alex Reynolds ♦ 31k
7
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5
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476
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5 follow
5
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Pulling out interval adjoining regions
bedtools bed bedops interval written 2.2 years ago by rbronste • 370 • updated 2.2 years ago by Alex Reynolds ♦ 31k
0
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0
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426
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0
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Closest features sort by set distance
bedtools bed bedops intervals written 2.2 years ago by rbronste • 370
1
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1
answer
672
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1
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Read depth interval comparison
read depth bed bedops bam bedtools written 2.2 years ago by rbronste • 370 • updated 2.2 years ago by Pierre Lindenbaum ♦ 133k
3
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2
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748
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2
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Extending BED intervals
bedtools bed bedops interval written 2.2 years ago by rbronste • 370 • updated 2.2 years ago by Alex Reynolds ♦ 31k
1
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1
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652
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1
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BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 2.3 years ago by rbronste • 370
4
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2
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3.5k
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2
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split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 4.9 years ago by 14134125465346445 • 3.5k • updated 2.4 years ago by _r_am ♦ 32k
2
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1
answer
755
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1
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Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 2.4 years ago by Anand Rao • 350 • updated 2.4 years ago by Alex Reynolds ♦ 31k
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