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4
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1
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162
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1
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bedops bedmap operation in python
python bedops bedmap written 12 weeks ago by Uday Rangaswamy • 120 • updated 4 weeks ago by Biostar ♦♦ 20
6
votes
2
answers
172
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2
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Combine .bed files and keep columns / headers
bedtools bedops bedmap written 7 weeks ago by fr • 100 • updated 7 weeks ago by ATpoint ♦ 19k
8
votes
1
answer
309
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1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 4 months ago by star • 170 • updated 4 months ago by Biostar ♦♦ 20
7
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3
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2.3k
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3
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Finding Chip Seq Overlaps with Bed files
bedtools chip-seq bedops bedmap written 3.6 years ago by morovatunc • 400
4
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1
answer
391
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1
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BEDOPS bedmap tool usage
bedops sequence bedmap dna written 6 months ago by Uday Rangaswamy • 120 • updated 6 months ago by Alex Reynolds ♦ 28k
1
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1
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298
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1
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BEDOPS installation on MAC
assembly bedops written 7 months ago by MK2000 • 30 • updated 7 months ago by Alex Reynolds ♦ 28k
7
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5
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273
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5 follow
5
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Pulling out interval adjoining regions
bedtools bed bedops interval written 7 months ago by rbronste • 240 • updated 7 months ago by Alex Reynolds ♦ 28k
0
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0
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203
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0
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Closest features sort by set distance
bedtools bed bedops intervals written 8 months ago by rbronste • 240
1
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1
answer
265
views
1
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Read depth interval comparison
read depth bed bedops bam bedtools written 8 months ago by rbronste • 240 • updated 8 months ago by Pierre Lindenbaum ♦ 121k
3
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2
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285
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2
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Extending BED intervals
bedtools bed bedops interval written 8 months ago by rbronste • 240 • updated 8 months ago by Alex Reynolds ♦ 28k
1
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1
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240
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1
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BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 9 months ago by rbronste • 240
4
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2
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2.2k
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2
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split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 3.4 years ago by 14134125465346445 • 3.5k • updated 10 months ago by RamRS ♦ 22k
2
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1
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413
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1
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Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 10 months ago by Anand Rao • 210 • updated 10 months ago by Alex Reynolds ♦ 28k
7
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2
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366
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2
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Finding closest downstream gene including overlap 3' ends
bedtools bedops written 13 months ago by jfelds11 • 20
0
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0
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782
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0
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Average PhastCon score using bedops
software error bedops starch written 2.7 years ago by Shaway • 10 • updated 14 months ago by Biostar ♦♦ 20
7
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2
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536
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7 follow
2
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How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 16 months ago by bk11 • 30 • updated 16 months ago by Alex Reynolds ♦ 28k
1
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2
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793
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2
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Stats on the overlapping length within two bed files
bedtools genome bedops written 16 months ago by beanavarro85 • 0 • updated 16 months ago by Alex Reynolds ♦ 28k
2
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1
answer
372
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1
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Bedops --element-of misses elements
bedops --element-of written 17 months ago by rs • 40 • updated 17 months ago by Alex Reynolds ♦ 28k
0
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1
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516
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1
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How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
bedops parallel convert2bed written 18 months ago by texaswhiskey1969 • 0 • updated 18 months ago by jean.elbers • 1.1k
0
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0
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458
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0
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How to crop gff feature into pieces when an overlap is found
bedtools annotation gff bedops genome written 18 months ago by rimjhim.roy.ch • 70
3
votes
1
answer
809
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1
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FIMO output to bed
bedtools fimo meme bedops written 18 months ago by rbronste • 240 • updated 18 months ago by YaGalbi • 1.4k
1
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1
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649
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1
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bedops gff2bed error
bedops gff2bed written 18 months ago by varsha619 • 80 • updated 18 months ago by Alex Reynolds ♦ 28k
4
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1
answer
446
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1
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bedops -u does not work properly
bed bedops intersect written 18 months ago by Ming Tang • 2.5k • updated 18 months ago by Alex Reynolds ♦ 28k
0
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2
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569
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2
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VCF to BED conversion error in BEDOPS
vcf bed bedops written 19 months ago by Shab86 • 240 • updated 19 months ago by Alex Reynolds ♦ 28k
6
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1
answer
1.1k
views
1
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bedops vcf2bed core dump
bedops vcf2bed written 20 months ago by RamRS ♦ 22k
5
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2
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683
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2
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Recompile bedops with increased TOKENS_MAX_LENGTH
sort-bed bedops written 20 months ago by RamRS ♦ 22k • updated 20 months ago by Alex Reynolds ♦ 28k
10
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3
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955
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5 follow
3
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bedops vcf2bed eats up all allocated memory
hpc bedops vcf2bed written 20 months ago by RamRS ♦ 22k
3
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4
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4.3k
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4
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Intersect multiple bed and keep all fields
bedtools bed bedops written 4.0 years ago by user230613 • 280 • updated 21 months ago by ashmc • 0
0
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0
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554
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0
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Merging bed intervals within a group
bedtools bed bedops written 23 months ago by EVR • 540
0
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0
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678
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0
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Creating reproducible peak regions from multiple ChIP-seq studies
bedtools bedops written 2.1 years ago by James Ashmore • 2.6k • updated 23 months ago by Biostar ♦♦ 20
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