Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 83 results • page 1 of 3 • next >
1
vote
0
answers
71
views
0
answers
Intersecting unbalanced BED files, normalizing for one
bedtools bedops written 29 days ago by LacquerHed • 0
0
votes
0
answers
140
views
0
answers
Putting bedtools in the path
bedtools bedops samtools written 8 weeks ago by A • 3.8k
0
votes
0
answers
118
views
0
answers
how can I extract intervals from bed file spanning a max larger interval in a windowed mode without disrupting intervals?
bedtools bed bedops sequencing written 4 months ago by serpalma.v • 40
2
votes
2
answers
237
views
2
answers
bedops sort-bed inconsistencies
sort-bed bedops written 5 months ago by RamRS ♦ 28k • updated 5 months ago by Alex Reynolds ♦ 30k
0
votes
0
answers
146
views
0
answers
Merge regions in a BED but only if they share the same value (copy number) in a column
bedtools bedops copy number written 6 months ago by Luca Beltrame • 220 • updated 6 months ago by ATpoint ♦ 36k
1
vote
0
answers
191
views
0
answers
Combining two BED files based on shared criteria
bedtools bed bedops interval written 8 months ago by rbronste • 360
9
votes
1
answer
281
views
1
answer
Limiting interval sizes with awk
bedtools bed bedops awk interval written 10 months ago by rbronste • 360
2
votes
1
answer
424
views
1
answer
Bamtobed paired mate error
bedtools bed bedops bamtobed written 10 months ago by rbronste • 360 • updated 10 months ago by ATpoint ♦ 36k
3
votes
2
answers
478
views
2
answers
ggplot density plot across bed file
R bedops ggplot density plot bed written 10 months ago by rbronste • 360 • updated 10 months ago by Nicolas Rosewick ♦ 9.0k
4
votes
1
answer
483
views
1
answer
Filtering BED file for interval length
bedtools bed bedops written 10 months ago by rbronste • 360
0
votes
0
answers
230
views
0
answers
Gene names from mixed location BED file
bedtools bed bedops annotations written 12 months ago by rbronste • 360
4
votes
1
answer
489
views
1
answer
bedops bedmap operation in python
python bedops bedmap written 15 months ago by Uday Rangaswamy • 120 • updated 13 months ago by Biostar ♦♦ 20
7
votes
2
answers
476
views
2
answers
Combine .bed files and keep columns / headers
bedtools bedops bedmap written 14 months ago by fr • 130 • updated 14 months ago by ATpoint ♦ 36k
8
votes
1
answer
552
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 17 months ago by star • 240 • updated 17 months ago by Biostar ♦♦ 20
7
votes
3
answers
2.9k
views
3
answers
Finding Chip Seq Overlaps with Bed files
bedtools chip-seq bedops bedmap written 4.7 years ago by morovatunc • 460
4
votes
1
answer
924
views
1
answer
BEDOPS bedmap tool usage
bedops sequence bedmap dna written 19 months ago by Uday Rangaswamy • 120 • updated 19 months ago by Alex Reynolds ♦ 30k
1
vote
1
answer
590
views
1
answer
BEDOPS installation on MAC
assembly bedops written 20 months ago by MK2000 • 30 • updated 20 months ago by Alex Reynolds ♦ 30k
7
votes
5
answers
422
views
5 follow
5
answers
Pulling out interval adjoining regions
bedtools bed bedops interval written 20 months ago by rbronste • 360 • updated 20 months ago by Alex Reynolds ♦ 30k
0
votes
0
answers
324
views
0
answers
Closest features sort by set distance
bedtools bed bedops intervals written 20 months ago by rbronste • 360
1
vote
1
answer
554
views
1
answer
Read depth interval comparison
read depth bed bedops bam bedtools written 21 months ago by rbronste • 360 • updated 21 months ago by Pierre Lindenbaum ♦ 129k
3
votes
2
answers
573
views
2
answers
Extending BED intervals
bedtools bed bedops interval written 21 months ago by rbronste • 360 • updated 21 months ago by Alex Reynolds ♦ 30k
1
vote
1
answer
521
views
1
answer
BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 21 months ago by rbronste • 360
4
votes
2
answers
3.1k
views
2
answers
split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 4.5 years ago by 14134125465346445 • 3.5k • updated 23 months ago by RamRS ♦ 28k
2
votes
1
answer
669
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 23 months ago by Anand Rao • 310 • updated 23 months ago by Alex Reynolds ♦ 30k
7
votes
2
answers
540
views
2
answers
Finding closest downstream gene including overlap 3' ends
bedtools bedops written 2.2 years ago by jfelds11 • 20
0
votes
0
answers
1.0k
views
0
answers
Average PhastCon score using bedops
software error bedops starch written 3.7 years ago by Shaway • 10 • updated 2.3 years ago by Biostar ♦♦ 20
7
votes
2
answers
810
views
7 follow
2
answers
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 2.4 years ago by bk11 • 40 • updated 2.4 years ago by Alex Reynolds ♦ 30k
1
vote
2
answers
1.3k
views
2
answers
Stats on the overlapping length within two bed files
bedtools genome bedops written 2.4 years ago by beanavarro85 • 0 • updated 2.4 years ago by Alex Reynolds ♦ 30k
2
votes
1
answer
528
views
1
answer
Bedops --element-of misses elements
bedops --element-of written 2.5 years ago by rs • 40 • updated 2.5 years ago by Alex Reynolds ♦ 30k
0
votes
1
answer
770
views
1
answer
How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
bedops parallel convert2bed written 2.5 years ago by texaswhiskey1969 • 0 • updated 2.5 years ago by jean.elbers • 1.4k
<prev • 83 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • UCLA, 5 minutes ago
  • US, Chicago, 10 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 685 users visited in the last hour