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Showing: bedops • reset
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<prev • 66 results • page 1 of 3 • next >
0
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0
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88
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0
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Closest features sort by set distance
bedtools bed bedops intervals written 3 days ago by rbronste • 200
0
votes
1
answer
68
views
1
answer
Read depth interval comparison
read depth bed bedops bam bedtools written 6 days ago by rbronste • 200 • updated 6 days ago by Pierre Lindenbaum ♦ 114k
3
votes
2
answers
87
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2
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Extending BED intervals
bedtools bed bedops interval written 7 days ago by rbronste • 200 • updated 7 days ago by Alex Reynolds ♦ 26k
1
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1
answer
99
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1
answer
BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 4 weeks ago by rbronste • 200
4
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2
answers
1.7k
views
2
answers
split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 2.7 years ago by 14134125465346445 • 3.4k • updated 9 weeks ago by RamRS ♦ 19k
2
votes
1
answer
227
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 10 weeks ago by Anand Rao • 160 • updated 10 weeks ago by Alex Reynolds ♦ 26k
7
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2
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246
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2
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Finding closest downstream gene including overlap 3' ends
bedtools bedops written 5 months ago by jfelds11 • 20
0
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0
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646
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0
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Average PhastCon score using bedops
software error bedops starch written 2.0 years ago by zwfanwz678 • 10 • updated 6 months ago by Biostar ♦♦ 20
7
votes
2
answers
331
views
7 follow
2
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How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 8 months ago by bk11 • 30 • updated 8 months ago by Alex Reynolds ♦ 26k
1
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2
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490
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2
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Stats on the overlapping length within two bed files
bedtools genome bedops written 8 months ago by beanavarro85 • 0 • updated 8 months ago by Alex Reynolds ♦ 26k
2
votes
1
answer
240
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1
answer
Bedops --element-of misses elements
bedops --element-of written 9 months ago by rs • 40 • updated 9 months ago by Alex Reynolds ♦ 26k
0
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1
answer
294
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1
answer
How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
bedops parallel convert2bed written 10 months ago by texaswhiskey1969 • 0 • updated 9 months ago by jean.elbers • 450
0
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0
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305
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0
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How to crop gff feature into pieces when an overlap is found
bedtools annotation gff bedops genome written 10 months ago by rimjhim.roy.ch • 70
3
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1
answer
570
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1
answer
FIMO output to bed
bedtools fimo meme bedops written 10 months ago by rbronste • 200 • updated 10 months ago by YaGalbi • 1.4k
1
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1
answer
399
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1
answer
bedops gff2bed error
bedops gff2bed written 10 months ago by varsha619 • 70 • updated 10 months ago by Alex Reynolds ♦ 26k
4
votes
1
answer
271
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1
answer
bedops -u does not work properly
bed bedops intersect written 10 months ago by Ming Tang • 2.4k • updated 10 months ago by Alex Reynolds ♦ 26k
0
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2
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362
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2
answers
VCF to BED conversion error in BEDOPS
vcf bed bedops written 11 months ago by Shab86 • 220 • updated 11 months ago by Alex Reynolds ♦ 26k
6
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1
answer
645
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1
answer
bedops vcf2bed core dump
bedops vcf2bed written 12 months ago by RamRS ♦ 19k
5
votes
2
answers
508
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2
answers
Recompile bedops with increased TOKENS_MAX_LENGTH
sort-bed bedops written 12 months ago by RamRS ♦ 19k • updated 12 months ago by Alex Reynolds ♦ 26k
10
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3
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698
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5 follow
3
answers
bedops vcf2bed eats up all allocated memory
hpc bedops vcf2bed written 12 months ago by RamRS ♦ 19k
3
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4
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3.7k
views
4
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Intersect multiple bed and keep all fields
bedtools bed bedops written 3.3 years ago by user230613 • 260 • updated 13 months ago by ashmc • 0
0
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0
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403
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0
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Merging bed intervals within a group
bedtools bed bedops written 15 months ago by EVR • 490
0
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0
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481
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0
answers
Creating reproducible peak regions from multiple ChIP-seq studies
bedtools bedops written 17 months ago by James Ashmore • 2.5k • updated 15 months ago by Biostar ♦♦ 20
4
votes
1
answer
672
views
1
answer
Closest gene to set of intervals
bedtools bedops written 17 months ago by rbronste • 200 • updated 17 months ago by Rohit • 1.3k
6
votes
1
answer
1.3k
views
1
answer
Merge bed files, keep the peak count
bedtools bedops chip-seq written 2.4 years ago by rioualen • 310 • updated 17 months ago by Biostar ♦♦ 20
1
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1
answer
563
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1
answer
BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 17 months ago by rbronste • 200 • updated 17 months ago by Alex Reynolds ♦ 26k
1
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1
answer
476
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1
answer
Peak ident near highly expressed genes
bedops chip-seq rna-seq written 17 months ago by rbronste • 200
1
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1
answer
702
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1
answer
closest-Features or closestBed Output to find genes downstream of coordinates
gene bedtools bedops sequence written 18 months ago by subramaniyam.ek • 0 • updated 18 months ago by Alex Reynolds ♦ 26k
1
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0
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679
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0
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Splitting the Spliced reads from genome Alignment
bedtools bed bedops bam spliced_reads written 18 months ago by EVR • 490
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0
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493
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0
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bedops wig2bed issue
bedops wig2bed written 18 months ago by rbronste • 200
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