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Problem with BRENDA SOAP

zeep brenda written 9 months ago by devmoy • 0

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196

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Mapping BRENDA ligand id to Kegg Compound id

brenda ligand written 12 months ago by Natasha • 40

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994

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Downloading data from BRENDA

zeep api brenda soap soappy written 21 months ago by Natasha • 40 • updated 12 months ago by BRENDA-enzymes • 10

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Protein sequence from EC number and species

sequence ec brenda written 6.5 years ago by miquelduranfrigola • 770 • updated 6.5 years ago by Brett • 150

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Recent Replies

C: Enrichment Analysis, Clustering and Scoring with pathfindR by Sumit Paliwal • 30
Hi, Thanks for the useful package and a wonderful tutorial. I have a small doubt. I assume that w...
C: Identifying novel mRNA transcripts by Pranathi_Limmala • 0
Yes, thankyou so much!
C: How do I effectively automate BLAST searches without using a local database? by Malcolm.Cook • 1.2k
it is possible to limit the subset of nr searched in a way relevant to the OPs application by [Li...
C: How do I effectively automate BLAST searches without using a local database? by Malcolm.Cook • 1.2k
I am unfamiliar with using the python wrapper to blast+ command line. Regardless... I question...
C: KEGG enrichment pathway by rpolicastro ♦ 3.9k
There doesn't appear to be KEGG or Reactome entries for wheat, but there is GO ontology data avai...
C: How to filter vcf file on minimum genotype depth and quality for each sample by shinken123 • 100
FMT is for Format, you can find more info here: https://www.biostars.org/p/350919/
C: Gene expression heatmap following pseudotime analysis by rpolicastro ♦ 3.9k
Yep, the code is essentially calculating a smoothed average, and then sorting the genes based on ...
C: Gene expression heatmap following pseudotime analysis by Vitis • 2.4k
It's a brilliant solution! So it basically smooths the expression across features, then sorts the...
A: Error on Linear regression bulkRNAseq by rpolicastro ♦ 3.9k
prova$sex <- factor(prova$treatment, levels=c("F","M")) should be prova$sex <- ...
A: from phased SNPs to haplotype blocks (or phase sets) by Peter Chung • 130
maybe HAPCUT2 ? ./build/HAPCUT2 --fragments fragment_file --VCF variants.vcf --output haplotype_...
C: Annotating reads with the name of the feature to which they map by lech.kaczmarczyk • 0
Thanks a lot for clarification @A. Dominguez!
C: PCA plotting using DESEq2 pipeline by GenoMax ♦ 96k
This comment belongs under @ATpoint's comment in answer below. Please don't use `SUBMIT ANSWER` ...

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