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How to change a property in several styles in Cytoscape?
cytoscape written 8 days ago by Ludo Cottret • 0 • updated 8 days ago by Jean-Karim Heriche ♦ 11k
1
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1
answer
384
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1
answer
Gene regulatory network visualization and annotation
visualization cytoscape gene regulatory network written 7 months ago by morteza.mahmoudisaber • 30 • updated 13 days ago by Biostar ♦♦ 20
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80
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WGCNA export network into cytoscape : problem
R network export cytoscape wgcna written 13 days ago by amnahsiddiqa • 0 • updated 13 days ago by WouterDeCoster ♦ 19k
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1
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83
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1
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How to properly export cytoscape GO network as pdf without cut-offs
network protein-protein interaction data cytoscape written 4 weeks ago by aladeokin1 • 0 • updated 4 weeks ago by scooter • 0
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1
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167
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1
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Editing and saving KEGG pathway files
xml kegg cytoscape written 3 months ago by justp • 0 • updated 3 months ago by theobroma22 • 710
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2
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2
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Cytoscape: Export all subnetworks to excel seperately
cytoscape subnetworks written 3.0 years ago by ancient_learner • 600 • updated 3 months ago by fankaili.bio • 0
3
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1
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249
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1
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Cytoscape: Getting the network layout right
cytoscape written 3 months ago by ckeil0689 • 0 • updated 3 months ago by Jean-Karim Heriche ♦ 11k
2
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1
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219
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1
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Co-expression network using a dataset from GEO
gene cytoscape rna-seq written 4 months ago by omer.k • 10 • updated 4 months ago by Lars Juhl Jensen ♦ 10k
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1
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254
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1
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Cytoscape Motif-Discovery plugin
motif cytoscape written 4 months ago by The Last Word • 90 • updated 4 months ago by piet.amc • 0
2
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1
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252
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1
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Cytoscape: how to show different interactions using different lines or different colors
gene-gene interactions network cytoscape written 4 months ago by Bioinformatician_in_trouble • 10
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1
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252
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1
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Input data for co-expression network by cytoscape
co-expression cytoscape rna-seq written 4 months ago by Edalat • 10 • updated 4 months ago by Jean-Karim Heriche ♦ 11k
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401
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Looking for a ClueGO (cytoscape) tutorial
cluego cytoscape go written 4 months ago by Lila M • 280
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2
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1.2k
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2
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Bayesian Network from R to visualize in cytoscape
R bayesian network cytoscape written 2.9 years ago by Maria • 0 • updated 5 months ago by 627922151 • 0
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213
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How to save results of jActiveModules plugin at Cytoscape_3.4.0?
jactivemodules cytoscape export written 5 months ago by Talip Zengin • 0 • updated 5 months ago by Lars Juhl Jensen ♦ 10k
6
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1
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335
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1
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Betweenness centrality or betweenness unDir which one should I use to plot centralities on an undirected network?
betweenness cytoscape centralities written 6 months ago by carolinapr.rocha • 50 • updated 6 months ago by Lars Juhl Jensen ♦ 10k
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198
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how can I set the key for assigning gene names to a PPI in cytoscape
cytoscape written 6 months ago by Learner • 70
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350
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How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene network cytoscape written 6 months ago by Farbod • 2.9k
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298
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How to Construct TF-based regulation network using Cytoscape software
transcription factor network cytoscape written 6 months ago by Farbod • 2.9k
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0
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271
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0
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Importing KEGG pathways into cytoscape
kegg cytoscape keggscape written 6 months ago by support • 20
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2
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329
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6 follow
2
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Cytoscape and gene network
gene ontology cytoscape written 6 months ago by bpatel • 30 • updated 6 months ago by kennethcondon2007 • 800
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1
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307
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1
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Color nodes based on attribute(column in data table) in cytoscape
protein network cytoscape proteins written 8 months ago by rickbeeloo13 • 0 • updated 8 months ago by Jean-Karim Heriche ♦ 11k
1
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1
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769
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1
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Convert SBML to .sif for Cytoscape
network format convert sbml cytoscape written 19 months ago by jolespin • 80 • updated 8 months ago by Biostar ♦♦ 20
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0
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296
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How to get max out of Cytoscape Visualization
microarray cytoscape genomics rna-seq written 8 months ago by jiwpark00 • 140
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246
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Cytoscape, select/filter multpile ID
filter cytoscape written 9 months ago by Maciej Jończyk • 530
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1
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388
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1
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Cytoscape ClusterMaker2. Use Expression Matrix, Network needed?
clustermaker2 expression matrix cytoscape written 10 months ago by Benni • 20
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305
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Tools for network active module identification?
R network jactivemodules bioconductor cytoscape written 10 months ago by enricoferrero • 700
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1
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244
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1
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Opening a local html file using an url in Cytoscape
cytoscape written 11 months ago by uddipaanh369 • 0 • updated 11 months ago by Jean-Karim Heriche ♦ 11k
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382
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Cytoscape- stuck at "merge networks"
cytoscape merge network written 11 months ago by mirza • 70
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700
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0
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How to create gene-gene/ protein- protein interaction network using Cytoscape?
cytoscape protein-protein interaction written 11 months ago by mirza • 70
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373
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0
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How to randomize my gene network to compare clustering coefficient?
R cytoscape gene network written 11 months ago by gustavoborin01 • 20
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