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<prev • 173 results • page 1 of 6 • next >
6
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1
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111
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1
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How to manage self loops in gene coexpression network constructed from RNA-seq data
gene R cytoscape rna-seq written 8 days ago by aishu.jp • 10 • updated 7 days ago by zx8754 ♦ 4.5k
3
votes
1
answer
91
views
1
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Cytoscape's plugin 'stringApp' error
software error gene cytoscape written 20 days ago by anu014 • 150 • updated 17 days ago by xanderpico • 150
0
votes
0
answers
138
views
0
answers
Checking the degree Distribution of a network after clustering
degree distribution cytoscape written 3 months ago by The Last Word • 150 • updated 21 days ago by Biostar ♦♦ 20
4
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1
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2.3k
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1
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How To Visualize Network Comparatively Via Cytoscape Or Other Tools
network cytoscape written 5.6 years ago by maddy • 20 • updated 23 days ago by kuntal.bhusan • 0
2
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1
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133
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1
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Create a network file to specie without PPI information
network ppi cytoscape written 4 weeks ago by aboutmb • 0 • updated 4 weeks ago by Leite • 240
2
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1
answer
130
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1
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Cytoscape: select edges that are the interactions between two networks
interaction network cytoscape written 5 weeks ago by Xiaokang ZH • 40 • updated 4 weeks ago by xanderpico • 150
0
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1
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97
views
1
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Cytoscape color code according to own annotations
enrichment network string cytoscape written 7 weeks ago by frida.danielsson • 30 • updated 7 weeks ago by Jean-Karim Heriche ♦ 15k
1
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0
answers
125
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0
answers
Identifying Protein protein interactions from co-IP/ mass spec spectrum counts
mass spectrometry ppi spectrum counts cytoscape written 7 weeks ago by indira.krishnan • 0
1
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1
answer
193
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1
answer
Multiple networks integrated into one figure in Cytoscape
network cytoscape written 3 months ago by Xiaokang ZH • 40 • updated 11 weeks ago by xanderpico • 150
2
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1
answer
209
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1
answer
Cytoscape : how to color same nodes with several colors ?
cytoscape written 12 weeks ago by ZheFrench • 130 • updated 11 weeks ago by scooter • 20
3
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1
answer
1.7k
views
1
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Construct a Gene Ontology Network
gene ontology cytoscape written 3.5 years ago by s.kheitan • 30 • updated 11 weeks ago by Biostar ♦♦ 20
22
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3
answers
16k
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3
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Coloring Multiple Nodes In Cytoscape
network visualization cytoscape written 7.4 years ago by pixie@bioinfo • 1.3k • updated 12 weeks ago by Biostar ♦♦ 20
1
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1
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243
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1
answer
Ideas for more analysis
cytoscape gene network written 4 months ago by The Last Word • 150 • updated 4 months ago by xanderpico • 150
8
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2
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464
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5 follow
2
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How to color nodes in Cytoscape according to expression of genes? How should the input file look like?
software degs cytoscape rna-seq expression written 4 months ago by orzech_mag • 170 • updated 4 months ago by a.zielezinski ♦ 8.3k
1
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1
answer
513
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1
answer
How to import both node and edge files into cytoscape from WGCNA?
wgcna node file cytoscape edge file written 5 months ago by niutster • 60 • updated 5 months ago by Kevin Blighe ♦ 22k
4
votes
1
answer
390
views
1
answer
Cytoscape network of upregulate and downregulate transcription factors: how to draw?
network cytoscape transcription factors rna-seq written 6 months ago by Farbod • 3.1k • updated 6 months ago by Leite • 240
3
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1
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1.6k
views
1
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Identifying interactors of hub genes using Cytoscape Network Analyzer plugin
networkanalyzer cytoscape biological process written 2.2 years ago by ishengomae • 90 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
409
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1
answer
Visualising all KEGG metabolism in Cytoscape
networks cytoscape kegg written 7 months ago by JRCX • 10 • updated 7 months ago by xanderpico • 150
0
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1
answer
276
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1
answer
R package (or other software) allowing to save a biological network in GPML format
gpml cytoscape written 8 months ago by lech.kaczmarczyk • 20 • updated 8 months ago by Jean-Karim Heriche ♦ 15k
0
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1
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388
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1
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Cytoscape - "Ontology and Annotation" import window not opening
cytoscape written 8 months ago by lech.kaczmarczyk • 20 • updated 8 months ago by xanderpico • 150
0
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1
answer
427
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1
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How to download PPI network file from Reactome database for a list of genes and view them in cytoscape ?
reactome cytoscape written 8 months ago by anandprem1792 • 0 • updated 8 months ago by Jean-Karim Heriche ♦ 15k
1
vote
1
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1.2k
views
1
answer
Convert SBML to .sif for Cytoscape
network format convert sbml cytoscape written 2.6 years ago by jolespin • 100 • updated 10 months ago by Rajinder Gupta • 0
2
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3
answers
1.4k
views
3
answers
network with cytoscape
cytoscape written 2.7 years ago by gbahramali • 20 • updated 10 months ago by karthicksharma • 0
2
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1
answer
412
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1
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how can we show in Cytoscape the types of interactions among gene-TF
cytoscape written 10 months ago by F • 3.0k • updated 10 months ago by scooter • 20
0
votes
1
answer
521
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1
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Creating a network in Cytoscape with nodes that have the same name
pathway network cytoscape written 11 months ago by justp • 10 • updated 11 months ago by solo7773 • 50
2
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1
answer
2.7k
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1
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How To Convert Ccytoscape Network Format Table Data To Json/Xgmml Format Without Using Cytoscape?
cytoscape written 4.3 years ago by sayonidas03 • 100 • updated 11 months ago by Biostar ♦♦ 20
0
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0
answers
347
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0
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Cytoscape GeneMANIA plugin
genemania cytoscape written 11 months ago by Omid • 510
1
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1
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451
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1
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How to draw many graphs in one graph in Cytoscape with different colors ?
colors cytoscape graph written 11 months ago by aouichechaimaa • 100 • updated 11 months ago by Jean-Karim Heriche ♦ 15k
0
votes
1
answer
376
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1
answer
Color scheme in Cytoscape
gene genome cytoscape written 11 months ago by miglanivarnika.26 • 10 • updated 11 months ago by Jean-Karim Heriche ♦ 15k
1
vote
1
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496
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1
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KGML missing information and visualization issues with Cytoscape
kegg cytoscape written 11 months ago by justp • 10 • updated 11 months ago by Keiichiro Ono • 130
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