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<prev • 179 results • page 1 of 6 • next >
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Applying Steiner minimal tree algorithm in Cytoscape
gene ppi cytoscape written 15 days ago by anu014 • 150 • updated 1 day ago by gary.bader • 0
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138
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Bipartite network analysis using cytoscape
cytoscape bipartite written 5 weeks ago by The Last Word • 160 • updated 17 days ago by Biostar ♦♦ 20
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111
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Cytoscape network view problem: running out of memory
cytoscape aracne written 22 days ago by piyushjo • 20
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1
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141
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1
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How to avoid duplicate edges between same node pair in a co-expression network
duplicate edges cytoscape rna-seq coexpression written 4 weeks ago by aishu.jp • 10 • updated 4 weeks ago by Kevin Blighe ♦ 25k
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147
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Scale-free networks are rare
cytoscape written 5 weeks ago by The Last Word • 160
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118
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What if a network is not scale-free?
network cytoscape rna-seq written 7 weeks ago by ag1805x • 90
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6 follow
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A Cytoscape Plugin For Grouping Nodes By 'Compartment' ?
network interaction cytoscape written 7.2 years ago by Lyco • 2.3k • updated 7 weeks ago by cecilia.jimenez-sanchez • 0
6
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184
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1
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How to manage self loops in gene coexpression network constructed from RNA-seq data
gene R cytoscape rna-seq written 8 weeks ago by aishu.jp • 10 • updated 8 weeks ago by zx8754 ♦ 4.8k
3
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1
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152
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1
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Cytoscape's plugin 'stringApp' error
software error gene cytoscape written 10 weeks ago by anu014 • 150 • updated 10 weeks ago by xanderpico • 150
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173
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Checking the degree Distribution of a network after clustering
degree distribution cytoscape written 4 months ago by The Last Word • 160 • updated 10 weeks ago by Biostar ♦♦ 20
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How To Visualize Network Comparatively Via Cytoscape Or Other Tools
network cytoscape written 5.7 years ago by maddy • 20 • updated 11 weeks ago by kuntal.bhusan • 0
4
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1
answer
178
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1
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Create a network file to specie without PPI information
network ppi cytoscape written 12 weeks ago by aboutmb • 0 • updated 12 weeks ago by Leite • 300
2
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1
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200
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1
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Cytoscape: select edges that are the interactions between two networks
interaction network cytoscape written 12 weeks ago by Xiaokang ZH • 40 • updated 12 weeks ago by xanderpico • 150
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142
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Cytoscape color code according to own annotations
enrichment network string cytoscape written 3 months ago by frida.danielsson • 30 • updated 3 months ago by Jean-Karim Heriche ♦ 16k
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Identifying Protein protein interactions from co-IP/ mass spec spectrum counts
mass spectrometry ppi spectrum counts cytoscape written 3 months ago by indira.krishnan • 0
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1
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252
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1
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Multiple networks integrated into one figure in Cytoscape
network cytoscape written 5 months ago by Xiaokang ZH • 40 • updated 4 months ago by xanderpico • 150
2
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1
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323
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1
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Cytoscape : how to color same nodes with several colors ?
cytoscape written 4 months ago by ZheFrench • 140 • updated 4 months ago by scooter • 20
3
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1
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1.8k
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1
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Construct a Gene Ontology Network
gene ontology cytoscape written 3.6 years ago by s.kheitan • 30 • updated 4 months ago by Biostar ♦♦ 20
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3
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16k
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3
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Coloring Multiple Nodes In Cytoscape
network visualization cytoscape written 7.6 years ago by pixie@bioinfo • 1.3k • updated 4 months ago by Biostar ♦♦ 20
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1
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274
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1
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Ideas for more analysis
cytoscape gene network written 5 months ago by The Last Word • 160 • updated 5 months ago by xanderpico • 150
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2
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584
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5 follow
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How to color nodes in Cytoscape according to expression of genes? How should the input file look like?
software degs cytoscape rna-seq expression written 6 months ago by orzech_mag • 180 • updated 6 months ago by a.zielezinski ♦ 8.4k
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633
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How to import both node and edge files into cytoscape from WGCNA?
wgcna node file cytoscape edge file written 7 months ago by niutster • 70 • updated 7 months ago by Kevin Blighe ♦ 25k
4
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1
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460
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1
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Cytoscape network of upregulate and downregulate transcription factors: how to draw?
network cytoscape transcription factors rna-seq written 8 months ago by Farbod • 3.1k • updated 8 months ago by Leite • 300
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1
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1.8k
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1
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Identifying interactors of hub genes using Cytoscape Network Analyzer plugin
networkanalyzer cytoscape biological process written 2.3 years ago by ishengomae • 90 • updated 8 months ago by Biostar ♦♦ 20
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474
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1
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Visualising all KEGG metabolism in Cytoscape
networks cytoscape kegg written 9 months ago by JRCX • 10 • updated 9 months ago by xanderpico • 150
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315
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1
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R package (or other software) allowing to save a biological network in GPML format
gpml cytoscape written 9 months ago by lech.kaczmarczyk • 20 • updated 9 months ago by Jean-Karim Heriche ♦ 16k
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433
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1
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Cytoscape - "Ontology and Annotation" import window not opening
cytoscape written 10 months ago by lech.kaczmarczyk • 20 • updated 10 months ago by xanderpico • 150
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494
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How to download PPI network file from Reactome database for a list of genes and view them in cytoscape ?
reactome cytoscape written 10 months ago by anandprem1792 • 0 • updated 10 months ago by Jean-Karim Heriche ♦ 16k
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1
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Convert SBML to .sif for Cytoscape
network format convert sbml cytoscape written 2.7 years ago by jolespin • 110 • updated 11 months ago by Rajinder Gupta • 0
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3
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1.5k
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3
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network with cytoscape
cytoscape written 2.9 years ago by gbahramali • 20 • updated 11 months ago by karthicksharma • 0
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