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how can we show in Cytoscape the types of interactions among gene-TF
cytoscape written 18 days ago by Fereshteh • 2.7k • updated 4 days ago by scooter • 10
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134
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1
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Creating a network in Cytoscape with nodes that have the same name
pathway network cytoscape written 28 days ago by justp • 10 • updated 27 days ago by solo7773 • 50
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How To Convert Ccytoscape Network Format Table Data To Json/Xgmml Format Without Using Cytoscape?
cytoscape written 3.4 years ago by sayonidas03 • 100 • updated 4 weeks ago by Biostar ♦♦ 20
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128
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Cytoscape GeneMANIA plugin
genemania cytoscape written 4 weeks ago by Omid • 470
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158
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How to draw many graphs in one graph in Cytoscape with different colors ?
colors cytoscape graph written 5 weeks ago by aouichechaimaa • 90 • updated 5 weeks ago by Jean-Karim Heriche ♦ 12k
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123
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Color scheme in Cytoscape
gene genome cytoscape written 5 weeks ago by miglanivarnika.26 • 10 • updated 5 weeks ago by Jean-Karim Heriche ♦ 12k
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166
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KGML missing information and visualization issues with Cytoscape
kegg cytoscape written 7 weeks ago by justp • 10 • updated 5 weeks ago by Keiichiro Ono • 130
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382
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How to get max out of Cytoscape Visualization
microarray cytoscape genomics rna-seq written 10 months ago by jiwpark00 • 140 • updated 7 weeks ago by Biostar ♦♦ 20
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131
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How to change a property in several styles in Cytoscape?
cytoscape written 9 weeks ago by Ludo Cottret • 0 • updated 9 weeks ago by Jean-Karim Heriche ♦ 12k
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438
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Gene regulatory network visualization and annotation
visualization cytoscape gene regulatory network written 8 months ago by morteza.mahmoudisaber • 30 • updated 9 weeks ago by Biostar ♦♦ 20
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WGCNA export network into cytoscape : problem
R network export cytoscape wgcna written 9 weeks ago by amnahsiddiqa • 0 • updated 9 weeks ago by WouterDeCoster ♦ 20k
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124
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How to properly export cytoscape GO network as pdf without cut-offs
network protein-protein interaction data cytoscape written 12 weeks ago by aladeokin1 • 0 • updated 12 weeks ago by scooter • 10
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Editing and saving KEGG pathway files
xml kegg cytoscape written 5 months ago by justp • 10 • updated 5 months ago by theobroma22 • 890
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Cytoscape: Export all subnetworks to excel seperately
cytoscape subnetworks written 3.2 years ago by ancient_learner • 600 • updated 5 months ago by fankaili.bio • 0
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317
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Cytoscape: Getting the network layout right
cytoscape written 5 months ago by ckeil0689 • 0 • updated 5 months ago by Jean-Karim Heriche ♦ 12k
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1
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268
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Co-expression network using a dataset from GEO
gene cytoscape rna-seq written 5 months ago by omer.k • 10 • updated 5 months ago by Lars Juhl Jensen ♦ 11k
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Cytoscape Motif-Discovery plugin
motif cytoscape written 6 months ago by The Last Word • 100 • updated 5 months ago by piet.amc • 0
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302
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1
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Cytoscape: how to show different interactions using different lines or different colors
gene-gene interactions network cytoscape written 6 months ago by Bioinformatician_in_trouble • 10
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318
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Input data for co-expression network by cytoscape
co-expression cytoscape rna-seq written 6 months ago by Edalat • 10 • updated 6 months ago by Jean-Karim Heriche ♦ 12k
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533
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Looking for a ClueGO (cytoscape) tutorial
cluego cytoscape go written 6 months ago by Lila M • 330
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Bayesian Network from R to visualize in cytoscape
R bayesian network cytoscape written 3.0 years ago by Maria • 0 • updated 7 months ago by 627922151 • 0
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How to save results of jActiveModules plugin at Cytoscape_3.4.0?
jactivemodules cytoscape export written 7 months ago by Talip Zengin • 0 • updated 7 months ago by Lars Juhl Jensen ♦ 11k
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Betweenness centrality or betweenness unDir which one should I use to plot centralities on an undirected network?
betweenness cytoscape centralities written 7 months ago by carolinapr.rocha • 50 • updated 7 months ago by Lars Juhl Jensen ♦ 11k
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how can I set the key for assigning gene names to a PPI in cytoscape
cytoscape written 8 months ago by Learner • 70
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How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene network cytoscape written 8 months ago by Farbod • 3.0k
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337
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How to Construct TF-based regulation network using Cytoscape software
transcription factor network cytoscape written 8 months ago by Farbod • 3.0k
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314
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Importing KEGG pathways into cytoscape
kegg cytoscape keggscape written 8 months ago by support • 30
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6 follow
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Cytoscape and gene network
gene ontology cytoscape written 8 months ago by bpatel • 30 • updated 8 months ago by kennethcondon2007 • 810
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369
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1
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Color nodes based on attribute(column in data table) in cytoscape
protein network cytoscape proteins written 10 months ago by rickbeeloo13 • 0 • updated 10 months ago by Jean-Karim Heriche ♦ 12k
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Convert SBML to .sif for Cytoscape
network format convert sbml cytoscape written 21 months ago by jolespin • 90 • updated 10 months ago by Biostar ♦♦ 20
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