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Blog: Neural identity, neuroethics and neurodegeneration of AI systems

data-science ai blog ml written 21 months ago by Khader Shameer ♦ 17k

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1.3k

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Blog: Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams

data-science wellness healthcare blog forum written 3.0 years ago by Khader Shameer ♦ 17k • updated 3.0 years ago by Prash • 20

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How to assess information content / mutual information between 2 sets of variables ?

data-science written 4.4 years ago by Khader Shameer ♦ 17k • updated 4.4 years ago by Ahill • 1.4k

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Matrix completion approaches for healthcare big data

data-science bigdata written 4.4 years ago by Khader Shameer ♦ 17k

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Recent Replies

C: Do we have to use a covariance (at quantitative scale) that is a normal distribu by wenqianglongli • 0
Hi Kevin, That answer is very useful!! Thanks for sharing and for your help.
A: Is there any way to merge intervals based on a minimum overlap? by Fabio Marroni • 2.1k
I think you can use bedtools [intersect][1], with the -f (minimum fraction of overlap) or -r (rec...
C: Module merging WGCNA by Kevin Blighe ♦ 37k
After you run these: # Numeric module labels moduleLabels = merge$colors # Conv...
C: Identify adapter position by lshepard • 140
To add: the [TrueSeq mRNA stranded kit protocol][1] also discusses the sequences of the adaptors ...
C: Identify adapter position by genomax ♦ 62k
In Illumina tech adapter sequences can only show up on 3'-end of your reads. You may also have ad...
C: Identify adapter position by Bastien Hervé ♦ 3.3k
Any QC tools will tell you that. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Also...
C: Interpro results analysis by Pierre Lindenbaum ♦ 116k
it's quite difficult to understand what you're trying to do. However I see that your input contai...
C: How to exclude some of breast cancer subtypes just by looking at gene expressio by Kevin Blighe ♦ 37k
Hey Dave, it is possible that some of the functionality of these commands has changed since I pos...
C: Do we have to use a covariance (at quantitative scale) that is a normal distribu by Kevin Blighe ♦ 37k
You may want to read the first answer in this very interesting thread: Is normality testing 'ess...
C: Hicexplorer error using hicBuildMatrix: no such file as qc_template.html by wolffj.bioinf • 10
Yes should be possible and we updated pip to a fixed version.
A: running BUSCO on unknown genomes ? by Corentin • 250
Hi, I do not think it is possible to use more than one genome. You do not have to use a referen...
C: Module merging WGCNA by Bioinformatics_NewComer • 320
URL: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/Consens...

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