differential-gene-expression Posts

C: Why does Exec RepeatMasker ProcessRepeats Fails? by Michael Dondrup ♦ 47k
Could you share your input files, mycustom_repeat.fa, MUCU_Flye_racon3_pilon3.fasta, MUCU_Flye_r...
C: How to determine the terminal GO terms (terminal nodes within GO DAG) within GO by nissen.itzel • 0
How did you created the object "db"?
A: Redirect output from MIXCR by mrkt • 0
If your command is: mixcr analyze amplicon -s \ --starting-material \ --5-end <5...
C: Where to find paired solid tumor WES raw data (tumor/tumor margin) that I can do by field654 • 0
Hi Colin, Thank you for providing the resource. Although I had some glitch when registering for ...
C: Is it valid to use differential gene expression analysis tool for scRNA-seq with by ATpoint ♦ 38k
What does ‚better‘ mean?
C: DESeq2 cannot compute log geometric means by andres.firrincieli • 820
Just use: dds<-estimateSizeFactors(dds, type = 'iterate') dds <- DESeq(dds, test="...
C: Problem of bcftools merge TCGA vcf files by l66081129 • 0
thank you for your answer sincerely !! it helps me a lot i,ve tried just now but there is error ...
A: Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1) by aymaigoro • 0
first of all clear those variables that have a unique value from you CSV file. then use this cod...
C: How to compare gene TPM values of two different conditions obtained from differe by Thind • 70
Thanks for your point. Do you think, a comparison of the [house-keeping][1] genes expression bet...
A: How to deal with high duplication rate in FASTQC ( de novo transcriptom assembly by h.mon ♦ 31k
RNAseq will almost always "fail" the duplication module from FastQC, because highly expressed gen...
C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict by Kevin Blighe ♦ 65k
Thank you! I think that the default for `independentFiltering` is `TRUE`, but this may depend on...
C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict by greenm11 • 0
Hi, Thanks for your rapid reply! The independent filtering variable being set to false is the def...