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123

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How to label subpopulation in fastphase?

snp data fastphase haplotype phasing written 4 months ago by kas • 0

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524

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fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output

bioinformatics phaseing fastphase genomics written 21 months ago by lakemonster • 10 • updated 18 months ago by tututuz • 0

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1.0k

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Need earlier version of fastPHASE

fastphase written 2.4 years ago by Gennady Khvorykh • 90 • updated 2.3 years ago by benjamin.pelissie • 0

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1.4k

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Fastphase cluster determination

cluster genotypes fastphase written 3.3 years ago by dp0b • 40 • updated 2.3 years ago by Gennady Khvorykh • 90

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1.2k

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Does HaploView perform phasing?

haplotypes haploview phase phasing fastphase written 2.8 years ago by veronicaschroeder78 • 110

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Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?

shapeit beagle haplotype fastphase readbackphasing written 3.4 years ago by kirannbishwa01 • 1.1k

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Is academic license for fastPHASE disabled?

fastphase written 4.3 years ago by kumar.vinod81 • 280 • updated 4.3 years ago by cpad0112 ♦ 12k

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1.3k

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Error in Installing or running fastPHASE

fastphase haplotype phasing written 4.5 years ago by Mohammad Ghoreishi • 50

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1.2k

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FastPhase:Output file not written in the specified folder

fastphase written 4.7 years ago by kumar.vinod81 • 280 • updated 4.7 years ago by Biostar ♦♦ 20

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fastPHASE output format to PLINK input format

file format plink fastphase written 4.7 years ago by kumar.vinod81 • 280

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how can I make input file for Haploview from Output files of inferred haplotypes by fastPHASE?

haploview phased haplotypes fastphase written 5.5 years ago by mary • 210 • updated 5.4 years ago by Biostar ♦♦ 20

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Recent Replies

C: Case control status permutation in GWAS by German.M.Demidov • 1.2k
By definition - number of times your permuted statistic is bigger/smaller than the observed one
C: Determine NCBI Nucleotide source of .fasta amino acid file by LRStar • 190
Thanks @gb. I believe it is the first one. What was your process for determining that? I have a f...
C: Xtract (Entrez Direct) issue when in bioinfo environment by genomax ♦ 76k
Perhaps conda's macOS install for Entrezdirect is broken? In a fresh terminal (while not in a con...
A: Batch Adjusted counts for Downstream Analysis by segato.felipe • 0
Hello, You could use combat to correct for batch effects, remove genes absent in most samples an...
A: Which genome browser to use for my data? by segato.felipe • 0
That's a great document. Thanks for sharing! Just to add to this, I like the WashU Epigenome Br...
A: How to plot 2 different shapes in 3D PCA plots generated by rgl plot3D by segato.felipe • 0
Hey, Since you're using R, I'd recommend the package "plot3D". It's a very flexible and easy to ...
C: Xtract (Entrez Direct) issue when in bioinfo environment by benoit.duc • 0
This is what I get: $ conda install -c bioconda entrez-direct Collecting package metadat...
C: Xtract (Entrez Direct) issue when in bioinfo environment by benoit.duc • 0
This didn't work for me and the issue is still the same
C: Xtract (Entrez Direct) issue when in bioinfo environment by benoit.duc • 0
Should have been just: xtract -version Same issue
C: What Is Ad (Allelic Depth) In 1000Genomes Vcf? by lincoln.harris • 0
I think you've actually got it backwards. [From][1] it looks like **DP** is *all* reads (informat...
C: Using Bedtools Closest (closestBed) to make distance histograms of protein bindi by linuxborg2 • 0
1: I have moved the source code to GitHub: https://github.com/ProfHariSeldon/closestBedPAR-CLIP ...
C: extract genes and functions +/-50kb around a SNP by reza.jabal • 350
Hi Pierre, Would you please update your answer to reflect the current dbSNP version?

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