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<prev • 823 results • page 1 of 28 • next >
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BCL2FASTQ2 Pipeline Errors
illumina fastq rna-seq bcl written 16 minutes ago by fouerghi20 • 0
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1
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Size of the demultiplexed fastq files
ngs next-gen fastq demultiplexing demultiplex written 5 hours ago by libremaple • 0 • updated 5 hours ago by genomax ♦ 86k
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Convert in fastq format a list of SRA files
sra fastq rna-seq cmd convert written 3 days ago by stefaquara • 0
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Combining normal+tumor fastq files to make a diluted tumor sample
dilution fastq tumor matchednormal cancer written 7 days ago by noshadho • 0
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How To Remove The Identifier And Quality From A Fastq File
perl fastq written 7.6 years ago by tenisha.phipps • 10 • updated 9 days ago by RamRS ♦ 27k
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Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
fastq paired end bwa written 9 days ago by tech • 0 • updated 9 days ago by i.sudbery ♦ 8.2k
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What is the best way to re-align a .bam file?
fasta fastq bam samtools written 9 days ago by tech • 0 • updated 9 days ago by WouterDeCoster ♦ 44k
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Preparing files to call by Manta
sv fastq bam manta written 9 days ago by German.M.Demidov • 1.7k
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Snakemake - moving, re-naming, unzipping and merging files for downstream analysis
merging fastq snakemake python written 13 days ago by camerond • 150
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Merge fastq files
fastq bash merge concatenate unix written 16 days ago by BM • 60 • updated 16 days ago by Asaf ♦ 8.2k
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138
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Help with my differential expression analysis (homework)
fastq alignment bioconductor rna-seq written 22 days ago by gatoxos • 0 • updated 21 days ago by h.mon ♦ 30k
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6 follow
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Is there a tool to find the correct percentage of duplication levels in FastQ ?
fastq sequencing written 22 days ago by 乙 • 160 • updated 22 days ago by genomax ♦ 86k
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Programmatically kicking off cellranger based on fastq folder format
10x scrna-seq fastq cellranger written 4 weeks ago by Vincent Laufer • 1.1k
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Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 2.0 years ago by ATpoint ♦ 36k • updated 5 weeks ago by Arindam Ghosh • 280
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BGIseq fastq read order
fastq bgiseq written 6 weeks ago by markchapman4774 • 0
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Quality checks for submitted data in SRA & EMBL
ncbi embl fastq qc written 6 weeks ago by DC7 • 20 • updated 6 weeks ago by ATpoint ♦ 36k
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Downsampling paired-end FASTQ files with a precise number of bases (not reads) - How to do it properly ?
ngs bbmap fastq downsampling written 7 weeks ago by mikizu • 0
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fastq to fasta perl
perl fasta fastq written 5.0 years ago by cabraham03 • 20 • updated 7 weeks ago by lakhujanivijay ♦ 5.1k
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Get data from SRA with just SAMN IDs
ncbi sra fastq rna-seq written 7 weeks ago by mark.dunning • 210
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quickly getting paired-end fastq of all unmapped reads from BAM file
fastq bam samtools written 8 weeks ago by dp • 40
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How to calculate the percentage of a repetitive motif in Fastq file
fastq sequence bbtools rna-seq written 8 weeks ago by lkianmehr • 50 • updated 8 weeks ago by Asaf ♦ 8.2k
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Removing a subset of fasta reads from a huge fastq file
fasta remove fastq extract deduplicate written 8 weeks ago by resug • 0 • updated 8 weeks ago by ATpoint ♦ 36k
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10 follow
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deinterleave fastq file
bamtofastq fastq written 5.2 years ago by szuszmok • 50 • updated 9 weeks ago by alienzj • 0
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22 follow
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Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 16 months ago by Phil Ewels • 560 • updated 10 weeks ago by ATpoint ♦ 36k
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conservative position extraction
consensus conservative fastq sequence parsing written 10 weeks ago by gatiyatov • 0 • updated 10 weeks ago by JC ♦ 10k
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1
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1
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bulkdownload fastq files from ENA
bulk fastq ena download written 10 weeks ago by amitpande74 • 0 • updated 10 weeks ago by genomax ♦ 86k
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5 follow
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Bisulfite Analysis With Illumina Fastq From Different Lanes
illumina fastq next-gen sequencing written 8.5 years ago by Tonig • 440 • updated 11 weeks ago by iraia.munoa • 100
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Can I determine if RNA-SEQ data is forward stranded, reverse stranded, or unstranded from FASTQ file?
reverse fastq forward unstranded rna-seq written 11 weeks ago by aaghodsinia • 0 • updated 11 weeks ago by Antonio R. Franco • 4.5k
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read group, fastq files, and multiple run ids
picard gatk fastq next-gen readgroups written 5 months ago by Cricket • 10 • updated 12 weeks ago by Biostar ♦♦ 20
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Attaining subset of reads from fastq file that are mapped in alignment
fastq alignment tool written 3 months ago by blake.mcmurray • 0 • updated 12 weeks ago by lakhujanivijay ♦ 5.1k
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