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Merging bowtie output
bowtie2 fastq alignment bowtie assembly written 56 minutes ago by Sbrillo • 0
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Read detection with pattern in paired end FASTQ file
fastq paired end awk written 2 days ago by amitpande74 • 10 • updated 2 days ago by GenoMax ♦ 94k
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How do I see my log.progress.out file
fastq star terminal rna-seq written 3 days ago by maria.faleeva • 0
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Any idea on how long fastq mapping takes in STAR?
fastq star rna-seq mapping written 3 days ago by maria.faleeva • 0
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52
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fastq processing with parallel command
bioinformatics fastq parallel gatk written 4 days ago by SurdanBurasi • 0 • updated 4 days ago by ATpoint ♦ 44k
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5 follow
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EXITING: because of fatal INPUT file error: could not open read file
genome fastq star mapping written 4 days ago by merfer0206 • 0
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Using STAR to map fastq files: EXITING: because of fatal INPUT ERROR: number of input files for mate3=1 is not equal to that for mate1=3
genome fastq star sequencing written 4 days ago by merfer0206 • 0
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123
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ENA and SRA fastq files
ena sratoolkit fastq next-gen assembly written 10 days ago by Sbrillo • 0 • updated 5 days ago by Rayan Chikhi • 1.5k
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How to create a merged human host viral RefSeq?
fasta fastq viral genome refseq rna-seq written 5 days ago by MatStat • 130
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SRA to fastq
sra fastq next-gen sequencing written 5.3 years ago by aj123 • 80 • updated 7 days ago by sabahali55lolo • 0
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103
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How to convert fastq to bam?
fastq bam written 8 days ago by arianc • 0 • updated 8 days ago by ATpoint ♦ 44k
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1
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116
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1
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paired-end fastq file remove mismatching lengths of bases and qualities error
fastq reformat bbtools repair written 12 days ago by Peter Chung • 120 • updated 11 days ago by Istvan Albert ♦♦ 86k
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109
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Modify query names longer than 252
minimap2 fastq samtools awk written 24 days ago by leonardo.caserta • 0 • updated 24 days ago by 5heikki ♦ 9.1k
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Convert Fas/Qual Into Fastq?
fasta fastq quality conversion written 9.0 years ago by Ahdf-Lell-Kocks • 1.6k • updated 26 days ago by anicet.ebou • 160
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143
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Identify FASTQ files containing multiple DNA sequences based on specific sequence ID's
fastq sequence file filtering written 4 weeks ago by tahir • 0
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136
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1
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MD5 checksums of two "identical" Gzipped fastq files different?
checksum fastq rna-seq integrity written 4 weeks ago by Dunois • 440 • updated 4 weeks ago by Pierre Lindenbaum ♦ 133k
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How to determine what allele a sample has from FASTQ data?
fasta alleles fastq rna-seq sequencing written 6 weeks ago by psyc_biostars • 0 • updated 6 weeks ago by _r_am ♦ 32k
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How to search for gene isoforms in FASTQ file
fastq isoform identification rna-seq written 8 weeks ago by nkabo • 50 • updated 8 weeks ago by ATpoint ♦ 44k
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Is there a way to identify replicates and retain their indices in fastq records?
fastq biostring shortread written 8 weeks ago by scolobs • 0 • updated 8 weeks ago by GenoMax ♦ 94k
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154
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1
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multiple samples differential expression analysis
fastq kallisto differential expression written 9 weeks ago by julie_dddd • 10 • updated 9 weeks ago by swbarnes2 ♦ 9.3k
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Split paired end fastq per lane from a bam file
fastq bam written 10 weeks ago by MAPK • 1.7k
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173
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scRNA: subset a small number of fastq reads
10x fastq scrna cellranger written 9 weeks ago by bsmith030465 • 150
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144
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1
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How can I find the position of a sequence in a fastq file
find fastq sequence position written 10 weeks ago by pomodoro_sinensis • 0 • updated 10 weeks ago by GenoMax ♦ 94k
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171
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1
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how to convert FASTQ to complementary sequences
fastq alignment rna-seq written 11 weeks ago by dahun73 • 10 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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Problems with fastq-dump generating a single fastq file
fastq fastq-dump pair-ended written 10 weeks ago by pomodoro_sinensis • 0 • updated 10 weeks ago by GenoMax ♦ 94k
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questions about qiime2 manifest file; error message: semantic type SampleData[SequenceWithQuality] does not have a compatible directory format.
fastq manifest file metagenome qiime2 qiime written 11 weeks ago by seok1213neo • 0 • updated 11 weeks ago by antonioggsousa • 1.9k
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I have questions about importing fastq data from ENA to qiime2
fastq qiime written 11 weeks ago by seok1213neo • 0
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136
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Bowtie: Mate files mapping error
fastq chip-seq mapping bowtie written 11 weeks ago by priya.dalvi • 0
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137
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1
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Possibility of mapping opposite strand
fastq alignment star rna-seq written 11 weeks ago by dahun73 • 10 • updated 11 weeks ago by swbarnes2 ♦ 9.3k
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Tool: Trimviz, a lightweight QC tool to assess impact of read-trimming and aligner soft-clipping
trimming tool fastq clipping alignment qc written 11 weeks ago by stuart archer • 70
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