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3
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1.5k
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1
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Applications/Methods For Whole Genome Shotgun Assembly?
fasta assembly fastq written 6.6 years ago by isa29 • 10 • updated 7 days ago by Biostar ♦♦ 20
3
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0
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155
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5 follow
0
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copy number became inaccurate when downsampling different number fastq reads from a whole fastq file
copy number not accurate fastq downsample cnv written 10 days ago by lffu_0032 • 40
5
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0
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101
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0
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Centrifuge - Error: reads file does not look like a FASTQ file
centrifuge metagenomics fastq shotgun written 9 days ago by richard • 0 • updated 8 days ago by h.mon ♦ 29k
0
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0
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86
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0
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read group, fastq files, and multiple run ids
picard gatk fastq next-gen readgroups written 13 days ago by Cricket • 10
0
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0
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91
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Trimmomatic : Why is output different? ; filtering with row -> q20 -> q30 vs row -> q30
trimmomatic fastq written 18 days ago by SSK • 10
0
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1
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87
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1
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Is it Possible to Filter a sc-RNA-Seq FASTQ based Upon Known Cell Barcodes?
single-cell fastq rna-seq written 19 days ago by bioinformatics2020 • 60 • updated 19 days ago by swbarnes2 ♦ 7.5k
1
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2
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90
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2
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Trimming fastq up until a sequence
trimming fastq sequencing written 23 days ago by SemiQuant • 70
5
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2
answers
92
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2
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Sequencing index information from BAM
fastq bam index written 24 days ago by trodriguez2011 • 0 • updated 24 days ago by swbarnes2 ♦ 7.5k
2
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1
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1.1k
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7 follow
1
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PSMC: fq2psmc conversion problems
psmcfa psmc fastq conversion written 17 months ago by miles.thorburn • 90 • updated 25 days ago by margaridahenriq • 0
76
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1
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12k
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68 follow
1
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Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 19 months ago by ATpoint ♦ 29k
4
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3
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2.9k
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6 follow
3
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AB1 to FASTQ
fastq ab1 conversion written 22 months ago by DanielC • 100 • updated 6 weeks ago by renaegeier • 10
0
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0
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71
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0
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How to download the barcode sequences for particular study in HMP
hmp fastq microbiome human microbiome project written 6 weeks ago by mail2steff • 50
3
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2
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146
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2
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Example NGS data
illumina fastq next-gen cutadapt written 6 weeks ago by ksgajula • 0 • updated 6 weeks ago by devarora • 70
35
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3
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2.0k
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3
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Do I have to check every fastqc to make good quality?
gene fastq sequencing rna-seq fastqc written 3.7 years ago by khaeuk • 80 • updated 6 weeks ago by Biostar ♦♦ 20
0
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93
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How to implement Hadoop as non map/reduce ?
hadoop java next-gen fastq non map/reduce written 7 weeks ago by Gene • 20
0
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1
answer
105
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1
answer
efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 7 weeks ago by barry • 0 • updated 7 weeks ago by ATpoint ♦ 29k
0
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1
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136
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1
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How to combine and convert fastq PE files into fasta files as batch?
fasta fastq denovoassembly written 8 weeks ago by sunnykevin97 • 30 • updated 8 weeks ago by ashish • 300
224
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8
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103k
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197 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.5 years ago by Obi Griffith ♦ 18k • updated 9 weeks ago by Darill • 40
1
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0
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220
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0
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FASTQ exctract ID's
fastq written 10 weeks ago by User000 • 280
0
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0
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159
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0
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How to get a FASTA file from BAM, SAM, or VCF files
fasta fastq repeatmodeler conversion sequencing written 10 weeks ago by as2779 • 0
12
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1
answer
188
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1
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There is some way to split a FastQ file by chromosome?
fasta sra fastq chromosome written 10 weeks ago by calebe_campos26 • 0 • updated 10 weeks ago by swbarnes2 ♦ 7.5k
1
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1
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238
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5 follow
1
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Is there a way to convert a FASTQ file to FASTA file?
genome fasta fastq repeatmodeler written 11 weeks ago by as2779 • 0 • updated 11 weeks ago by swbarnes2 ♦ 7.5k
2
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0
answers
186
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0
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UMI on the fastq header
illumina umi fastq umi-tools rna-seq written 12 weeks ago by Ati • 30
2
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1
answer
162
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1
answer
Problem with read counts after concatenating FASTQ files
fastq rna-seq written 12 weeks ago by Athreya • 0
0
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0
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122
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0
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Fastq error compiled with ART
art fastqvalidator fastq written 12 weeks ago by marongiu.luigi • 460
3
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3
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215
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5 follow
3
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Concatenate fastq files before or after trimming?
illumina fastq concatenate trimgalore written 3 months ago by emb13 • 0 • updated 3 months ago by sklages • 90
0
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2
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169
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2
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How to split a FASTQ file with ITS and 16S reads in it in R
dada 2 R 16s its fastq written 3 months ago by katie.miaow • 0
1
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1
answer
152
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1
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Phred33 Why subtract 33
fastq sequencing written 3 months ago by eledu998 • 0
0
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0
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167
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0
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Generate list of numbers corresponding to fq reads based on 6-character barcode
barcode fastq written 3 months ago by johnsonn573 • 0
6
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2
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272
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2
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Subset Fastq file from list of read numbers
reads fastq subset written 3 months ago by johnsonn573 • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 126k
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