Showing: fastqreset
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7
votes
1
answer
81
views
1
answer
Can STAR work with compressed .gz FASTQ input?
compressed fastq gz star alignment written 16 hours ago by cristian30 • updated 16 hours ago by Santosh Anand700
1
vote
1
answer
80
views
1
answer
Order of reads in FASTQ file
fastq rna-seq written 1 day ago by lkmklsmn630 • updated 1 day ago by Brian Bushnell10k
3
votes
1
answer
108
views
1
answer
1
vote
1
answer
64
views
1
answer
Parsing flowcell from hiseq 2000 read name
illumina fastq hiseq written 3 days ago by steven.davis0 • updated 3 days ago by Pierre Lindenbaum91k
2
votes
2
answers
98
views
2
answers
1
vote
1
answer
70
views
1
answer
23
votes
1
answer
2.8k
views
6 follow
1
answer
Tool: FASTA and FASTQ tools
fasta python fastq c++ tool written 22 months ago by Kamil1.4k
4
votes
1
answer
67
views
1
answer
Using compression with rsync or scp when transferring *.fastq.gz files?
fastq scp rsync written 11 days ago by ropolocan120 • updated 11 days ago by Alex Reynolds17k
11
votes
0
answers
209
views
6 follow
0
answers
Tool: uQ - small binary FASTQ
fastq tool compression written 20 days ago by John10k
6
votes
2
answers
121
views
7 follow
2
answers
5
votes
2
answers
89
views
2
answers
Illumina fastq lane output
illumina fastq bcl written 15 days ago by sacha710 • updated 15 days ago by igor3.6k
14
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1
answer
587
views
1
answer
9
votes
1
answer
446
views
1
answer
23
votes
4
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443
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7 follow
4
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Tool: FastQt : a clone of FastQC in C++/Qt
fastq fastqc tool qt cpp written 3 months ago by sacha710
8
votes
3
answers
2.9k
views
3
answers
How to extract all the mapped reads from bwa output
fastq mapping bwa written 2.2 years ago by RT280 • updated 25 days ago by tans03070
19
votes
6
answers
2.5k
views
13 follow
6
answers
Parse Fastq File - Pad Reads With N'S
fastq parsing written 5.1 years ago by Steffi510 • updated 28 days ago by infenit10110
4
votes
2
answers
100
views
2
answers
dedupe from BBMAP suite woes with memory and stdout
duplicates fastq bbmap dedupe linux written 4 weeks ago by ALchEmiXt1.8k • updated 4 weeks ago by Brian Bushnell10k
121
votes
8
answers
40k
views
106 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 2.6 years ago by Obi Griffith14k • updated 5 weeks ago by al-ash0
3
votes
1
answer
112
views
1
answer
how to split/cut/restrict DNA strand
fasta manipulation fastq python R written 5 weeks ago by Roman Lu┼ítrik50 • updated 5 weeks ago by shenwei3562.3k
13
votes
2
answers
172
views
5 follow
2
answers
Forum: Modernising the FASTQ Format
fasta fastq forum efficiency written 5 weeks ago by dario.garvan350 • updated 5 weeks ago by d-cameron500
1
vote
2
answers
392
views
2
answers
Match read length and quality string length
fastq rna-seq sequencing written 8 months ago by Jason20 • updated 5 weeks ago by Biostar ♦♦ 10
17
votes
3
answers
2.6k
views
5 follow
3
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 2.3 years ago by Zev.Kronenberg10k • updated 6 weeks ago by Christian2.4k
17
votes
4
answers
458
views
5 follow
4
answers
10
votes
4
answers
1.9k
views
4
answers
Extract specific reads from FASTQ files based on subsequence
fastq awk bash written 22 months ago by Paul490 • updated 6 weeks ago by springpython0
45
votes
6
answers
28k
views
13 follow
6
answers
Converting Bam To Fastq
next-gen fastq format tool sequencing written 6.9 years ago by Zach Stednick590 • updated 7 weeks ago by Biostar ♦♦ 10
2
votes
1
answer
161
views
1
answer
11
votes
4
answers
7.3k
views
7 follow
4
answers
How Can I Find Out Unknown Illumina Barcode.
reads illumina fastq hiseq written 3.2 years ago by samsara490 • updated 8 weeks ago by elgart0
4
votes
1
answer
182
views
1
answer
Fastx_toolkit with nanopore data
fasta fastq fastx nanopore written 8 weeks ago by glgowers10 • updated 8 weeks ago by Botond Sipos1.5k
7
votes
2
answers
1.9k
views
5 follow
2
answers
Nextera Transposon Contamination
fastq nextera written 2.4 years ago by Daniel E Cook130 • updated 8 weeks ago by agata88460
4
votes
3
answers
1.8k
views
3
answers
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