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<prev • 625 results • page 1 of 21 • next >
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94
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Find adapter sequences
fasta adapter sequencing fastq fastqc written 2 days ago by science_lizard • 0
3
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2
answers
123
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2
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How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 4 days ago by MAPK • 1.2k • updated 3 days ago by sschmeier • 80
2
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1
answer
92
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1
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Why do I have more reads in my .bam file than in my .fastq input file?
fastq alignment bam written 6 days ago by francois • 10 • updated 6 days ago by Pierre Lindenbaum ♦ 110k
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1
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118
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1
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Fastq file from SRA database not mapping to to the genome
sra fastq mapping rna-seq written 6 days ago by amoltej • 80 • updated 6 days ago by genomax ♦ 51k
20
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1
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261
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7 follow
1
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How to work with 2.6 TB genome data which is deposited in the server?
exome fastq sequencing written 7 days ago by greyman • 30 • updated 6 days ago by ATpoint • 5.5k
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237
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7 follow
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Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 12 days ago by ATpoint • 5.5k
19
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5
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14k
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10 follow
5
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Efficiently Iterating Over Fastq Records From Python
fasta fastq next-gen biopython python sequencing written 6.6 years ago by User 9996 • 770 • updated 14 days ago by hurfdurf • 460
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5
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1.1k
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5
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SRA to fastq
sra fastq next-gen sequencing written 2.8 years ago by aj123 • 70 • updated 14 days ago by i.sudbery • 2.4k
16
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3
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187
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10 follow
3
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Batch rename *fastq.gz files using regular expression
rename perl fastq regex written 21 days ago by Leonardo Normando • 50 • updated 21 days ago by cpad0112 • 7.6k
3
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0
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133
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0
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filter_fasta.py not removing sequences from fastq based on read IDs
sequencing fastq sequence qiime written 25 days ago by fjs5035 • 0 • updated 25 days ago by Vijay Lakhujani ♦ 2.7k
1
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1
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106
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1
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Filtering reads on the basis of percentage of ambiguous(N's) characters
filter fastq rna-seq written 26 days ago by Varun Gupta • 1000 • updated 25 days ago by Pierre Lindenbaum ♦ 110k
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74
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count and compare microRNA expression value in RNA-Seq data on Galaxy
fastq galaxy rna-seq microrna dge written 29 days ago by lkianmehr • 0
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bcl2fastq is interpreting my experiment folder structure incorrectly as MiSeq-style instead of NextSeq-style
nextseq illumina fastq bcl2fastq bcl written 4 weeks ago by ekofman • 0 • updated 4 weeks ago by h.mon ♦ 16k
3
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1
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110
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1
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How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 4 weeks ago by rice.researcher • 90 • updated 4 weeks ago by Devon Ryan ♦ 81k
8
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1
answer
158
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5 follow
1
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How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 4 weeks ago by 2405592M • 0 • updated 4 weeks ago by Devon Ryan ♦ 81k
7
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1
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188
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1
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get identical number of read1 and read2 aligned
fastq dna written 5 weeks ago by oghzzang • 10
1
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1
answer
137
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1
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Download example data of cancer gene-panel
fastq gene-panel bam written 5 weeks ago by hshah • 20 • updated 5 weeks ago by genomax ♦ 51k
3
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2
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931
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6 follow
2
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Bam to fastq conversion is giving error?
software error genome fastq picard bam written 13 months ago by kirannbishwa01 • 810 • updated 6 weeks ago by Biostar ♦♦ 20
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2
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113
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2
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Removal of non quality read in fastq file
fastq quality written 6 weeks ago by akbioinfo14 • 0 • updated 6 weeks ago by Bastien Hervé • 1.5k
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1
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157
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1
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Questions about bam to fastq
samtools fastq bam question written 7 weeks ago by oghzzang • 10 • updated 7 weeks ago by 5heikki ♦ 7.4k
11
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1
answer
1.1k
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6 follow
1
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Tool: Sequence Database curator
fastq sequence tool blast sequencing written 17 months ago by Eslam Samir • 100
2
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2
answers
127
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5 follow
2
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How to output fastq files from in silico digests?
in silico digest fastq ddrad written 8 weeks ago by gdholmes007 • 0 • updated 8 weeks ago by Pierre Lindenbaum ♦ 110k
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1
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175
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1
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Trying to Identify larger indels from NGS data, FASTQ format
rad-seq fasta ngs fastq dna written 9 weeks ago by alice_pieplow • 0 • updated 9 weeks ago by Kevin Blighe ♦ 24k
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2
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138
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2
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using NCBI SRA data for prinseq
software error sra fastq sequence prinseq written 9 weeks ago by mforthman • 30 • updated 9 weeks ago by swbarnes2 ♦ 3.8k
6
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2
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134
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2
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Gene Expression data and variants from the same fastq raw file
fastq gene expression variant analysis fastqc written 11 weeks ago by gemini.venkat • 0 • updated 11 weeks ago by Michael Dondrup ♦ 44k
2
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3
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327
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5 follow
3
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Merging two fastq.gz files
merging fastq written 11 weeks ago by tcf.hcdg • 60 • updated 11 weeks ago by igor ♦ 6.3k
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213
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0
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Mapping with Fasta vs fastq
fasta bowtie1 command fastq mapping written 12 weeks ago by jaqx008 • 30 • updated 12 weeks ago by genomax ♦ 51k
5
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1
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337
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1
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10X scRNA-seq sample sheet generation issue
10x fastq sequencing bcl written 3 months ago by nikitavlassenko • 0 • updated 3 months ago by genomax ♦ 51k
1
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0
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235
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0
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AB1 to FASTQ
fastq ab1 conversion written 3 months ago by DK • 50
1
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3
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1.0k
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3
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Match read length and quality string length
fastq rna-seq sequencing written 2.1 years ago by Jason • 20 • updated 3 months ago by peterhuang1108 • 0
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