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questions about qiime2 manifest file; error message: semantic type SampleData[SequenceWithQuality] does not have a compatible directory format.
fastq manifest file metagenome qiime2 qiime written 1 day ago by seok1213neo • 0 • updated 1 day ago by antonioggsousa • 1.5k
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59
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I have questions about importing fastq data from ENA to qiime2
fastq qiime written 2 days ago by seok1213neo • 0
1
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0
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39
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0
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how to convert FASTQ to complementary sequences
fastq alignment rna-seq written 2 days ago by dahun73 • 10
0
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0
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32
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Bowtie: Mate files mapping error
fastq chip-seq mapping bowtie written 3 days ago by priya.dalvi • 0
0
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1
answer
44
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1
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Possibility of mapping opposite strand
fastq alignment star rna-seq written 3 days ago by dahun73 • 10 • updated 3 days ago by swbarnes2 ♦ 8.9k
2
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99
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Tool: Trimviz, a lightweight QC tool to assess impact of read-trimming and aligner soft-clipping
trimming tool fastq clipping alignment qc written 3 days ago by stuart archer • 60
0
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84
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error: BAM to FASTQ
fastq bam samtools convert written 9 days ago by mailard • 0 • updated 9 days ago by RamRS ♦ 30k
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115
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Is there any way to distinguish between a company or a device through the unique device header in the Fastq file?
illumina fastq pacific biosciences written 13 days ago by jseon.jeon • 0
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2
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Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fasta fastq seqkit tool written 4.1 years ago by shenwei356 ♦ 5.5k • updated 17 days ago by adriana.gallego.02 • 10
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1
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85
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Trimmomatic trims most of the reverse strand
trimmomatic fastq trim bwa written 18 days ago by hkarakurt • 100 • updated 18 days ago by genomax ♦ 91k
1
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1
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102
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1
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bcl2fastq error? (bcl2fastq::common::InputDataError)
nextseq fastq bcl2fastq illumina written 22 days ago by mhmtgenc85 • 40 • updated 22 days ago by RamRS ♦ 30k
3
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143
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How to extract reads with exact match with BBDuk?
fastq bbduk rna-seq written 5 weeks ago by camelest • 10
44
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27 follow
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Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 20 months ago by Phil Ewels • 600 • updated 4 weeks ago by ATpoint ♦ 40k
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How to split PE fastq file (hear me out), where instead of listing as a pair of 150bp reads, the previous user concatenated them into one 300bp string?
paired-end sequence fastq rna-seq written 5 weeks ago by turo.1 • 20
0
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1
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144
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1
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How get read group information from fastq files in SRA
sra fastq read group bwa written 6 weeks ago by zamani_2012 • 0 • updated 6 weeks ago by ATpoint ♦ 40k
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119
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Error while converting sra to fastq
ncbi sra fastq dna written 6 weeks ago by gunavaran.15 • 0
3
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0
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954
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bwa mem -R (RGline) format for DNBseq fastq
wgs dnbseq bwa mem fastq bwa written 14 months ago by joe • 140 • updated 6 weeks ago by xxa • 0
0
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1
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155
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1
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Convert in fastq format a list of SRA files
sra fastq rna-seq cmd convert written 3 months ago by stefaquara • 0 • updated 6 weeks ago by ATpoint ♦ 40k
2
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1
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146
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1
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SRA ftp site change?
sra fastq ftp download written 7 weeks ago by michael.j.apostolides • 0 • updated 7 weeks ago by genomax ♦ 91k
6
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1
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150
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1
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NGS Sequencing Outputs
fasta illumina ngs bam fastq written 7 weeks ago by speycast • 0 • updated 7 weeks ago by genomax ♦ 91k
5
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1
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990
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5 follow
1
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Viewing and editing FASTQ files
next-gen fastq alignment rna-seq sequencing written 17 months ago by gprashant17 • 70 • updated 7 weeks ago by Biostar ♦♦ 20
13
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1
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3.9k
views
9 follow
1
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Split fastq according to barcodes
scrna-seq fastq demultiplexing written 22 months ago by Houyu Zhang • 20 • updated 9 weeks ago by SV • 0
95
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2
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19k
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80 follow
2
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Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 2.3 years ago by ATpoint ♦ 40k • updated 10 weeks ago by Brunox13 • 20
4
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1
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276
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1
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How do I process a FASTQ file in RStudio?
R fastq processing written 11 weeks ago by bousbiat.ilhem • 0 • updated 11 weeks ago by JC ♦ 12k
6
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1
answer
229
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1
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convert SRA to fastq
fastq sra toolkit fastq-dump written 11 weeks ago by mo.ghasemi717 • 10 • updated 11 weeks ago by dariober ♦ 11k
4
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1
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239
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5 follow
1
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Paired-End Reads and Variant Calling
fastq sam bwa written 12 weeks ago by ocortes • 0 • updated 12 weeks ago by h.mon ♦ 31k
2
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1
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144
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1
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mix of strains
vcf fastq snp written 12 weeks ago by sami • 20 • updated 12 weeks ago by colindaven • 2.4k
0
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157
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Interpreting paired-end tumor-normal WES
exome sra fastq paired-end written 12 weeks ago by the_darkside • 0
2
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1
answer
204
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1
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Fastq files with only " ! " score
fastq samtools written 3 months ago by pablo • 140 • updated 3 months ago by genomax ♦ 91k
1
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0
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146
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0
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Masking fastq file for repeats
bed fastq psmc written 3 months ago by thjnant • 110 • updated 3 months ago by RamRS ♦ 30k
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