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2
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1
answer
77
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1
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bowtie2 error "Read xyz has more quality values than read characters" -> signal 6 (ABRT)
bowtie2 fastq rna-seq written 8 days ago by normanreppingen • 0
0
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0
answers
124
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0
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What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 13 days ago by MutationalMeltdown • 20
2
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1
answer
105
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1
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ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 16 days ago by Mr Locuace • 90 • updated 16 days ago by Sean Davis ♦ 25k
3
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0
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106
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5 follow
0
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Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
decompression fastq bcl2fastq2 raw bcl written 16 days ago by badredda • 110
47
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1
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5.7k
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40 follow
1
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Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 13 months ago by ATpoint ♦ 21k
0
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2
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2.4k
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2
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output of bedtools bamtofastq are empty files
bamtofastq bedtools fastq bam samtools written 4.3 years ago by szuszmok • 40 • updated 23 days ago by gohchengang1994 • 0
1
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1
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328
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6 follow
1
answer
Fastq to BAM
fastq bam written 10 weeks ago by zliew • 0 • updated 4 weeks ago by Biostar ♦♦ 20
13
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3
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220
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6 follow
3
answers
Is it possible to directly convert fastq to CRAM ?
fastq bam cram storage written 5 weeks ago by lakhujanivijay ♦ 4.3k
3
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1
answer
259
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1
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Issue With CRAM -> BAM -> FASTQ Conversion
samtools fastq bam cram view written 6 weeks ago by denis.k • 10 • updated 5 weeks ago by jkbonfield • 160
0
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2
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120
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2
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Filter nanopore fastq files by start time
filter fastq nanopore start time written 5 weeks ago by sendhelp • 0 • updated 5 weeks ago by genomax ♦ 70k
1
vote
1
answer
93
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1
answer
BWA index getting killed
fastq bam bwa index written 5 weeks ago by abbysue • 10 • updated 5 weeks ago by swbarnes2 ♦ 6.2k
0
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1
answer
211
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5 follow
1
answer
How to align 10X R1 and R2 fastqs?
10x pairend fastq alignment rna-seq written 6 weeks ago by sambunga094 • 0 • updated 6 weeks ago by Zhixue • 10
1
vote
1
answer
135
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1
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Megahit Assembly - command line error
assembly fastq megahit bioinformatics written 8 weeks ago by yuki4208 • 0 • updated 8 weeks ago by Mensur Dlakic • 540
2
votes
1
answer
238
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1
answer
Can't pair-end fastqs after filtering
fastq pair-ending written 8 weeks ago by miles.thorburn • 80 • updated 8 weeks ago by h.mon ♦ 27k
0
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0
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130
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0
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what is the fastest way to extract reads of a specific barcode from a fastq
illumina fastq next-gen bcl2fastq demultiplexing written 8 weeks ago by b10hazard • 20
3
votes
1
answer
113
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1
answer
bwa job - error with file size
fastq alignment bwa rna-seq sam written 9 weeks ago by Laura SMC • 0
1
vote
1
answer
215
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1
answer
Keeping only matching reads in fastq files
fastq written 9 weeks ago by miles.thorburn • 80 • updated 9 weeks ago by genomax ♦ 70k
7
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0
answers
193
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9 follow
0
answers
fastq dump usage of microRNA-seq data
fastq rna-seq microrna written 10 weeks ago by K.patel5 • 30
2
votes
0
answers
144
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0
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understanding bowtie2 unmapped reads
bowtie2 fastq unmapped-reads written 10 weeks ago by Assa Yeroslaviz • 1.2k • updated 10 weeks ago by lieven.sterck ♦ 5.5k
27
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4
answers
8.6k
views
14 follow
4
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Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 5.6 years ago by Devon Ryan ♦ 91k • updated 11 weeks ago by sschmeier • 80
3
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1
answer
223
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5 follow
1
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Viewing and editing FASTQ files
next-gen fastq alignment rna-seq sequencing written 11 weeks ago by gprashant17 • 60
2
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0
answers
127
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0
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How to remove the 5' sepecific sequence of fastq file
remove fastq cutadapt written 11 weeks ago by hsu • 10
5
votes
0
answers
214
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5 follow
0
answers
How to extract reads which contain specific sequence from fastq file
reads fastq extract written 11 weeks ago by hsu • 10 • updated 11 weeks ago by WouterDeCoster ♦ 40k
4
votes
1
answer
198
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1
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ValueError("End of file without quality information.") when using SeqIO
python fastq seqio fastqgeneraliterator biopython written 12 weeks ago by Arko • 20 • updated 12 weeks ago by RamRS ♦ 23k
1
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1
answer
208
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1
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biojava get qualityscores of sequence
biojava java fastq written 12 weeks ago by t-jim • 30 • updated 12 weeks ago by dariober ♦ 10k
5
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0
answers
207
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0
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Insert variant into fastq file
fastq ngs written 12 weeks ago by rachel.berman6 • 0
0
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0
answers
218
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0
answers
Fastq-dump error time exhausted
ncbi fastq rna-seq written 3 months ago by bharata1803 • 420
3
votes
1
answer
172
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5 follow
1
answer
Fasta to FastQ with known qualities
fasta fastq sequence written 3 months ago by ADDNOTHIING • 0 • updated 3 months ago by Bastien Hervé ♦ 4.4k
8
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0
answers
243
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0
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fastq file format error
illumina fastq written 3 months ago by hafiz.talhamalik • 90 • updated 3 months ago by Pierre Lindenbaum ♦ 122k
3
votes
1
answer
270
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5 follow
1
answer
ENA data download : difference between "FASTQ" and "Submitted" files ?
ebi fastq ena written 3 months ago by guillaume.rbt • 620
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