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<prev • 760 results • page 1 of 26 • next >
1
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97
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1
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Mapping to contigs or predicted genes, for quantitative gene analysis (DNAseq)
dnaseq fastq alignment contigs map written 1 day ago by allerdrengen55 • 20 • updated 22 hours ago by Asaf ♦ 6.4k
3
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1
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1.5k
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1
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Fastq files with very high per base sequencing quality score
quality scores fastq sequencing written 3.3 years ago by Ivan S • 0 • updated 4 days ago by Biostar ♦♦ 20
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0
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74
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0
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Fastq-dump does not work
fastq xml/libxml biostars book written 7 days ago by obuhovadarina • 0
215
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8
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191 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.2 years ago by Obi Griffith ♦ 18k • updated 14 days ago by yousefifariba6 • 0
1
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98
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Python script for filtering out read quality
python fastq written 16 days ago by JohnJACK • 0
3
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1
answer
137
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1
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Finding FASTQ files for TCGA Data
fastq tcga rna-seq written 18 days ago by allosteric+biostars • 0 • updated 16 days ago by kristoffer.vittingseerup • 2.6k
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109
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How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
fastq paired-end written 16 days ago by isu2017 • 0
1
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1
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140
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1
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Base count NOT read count - Downsampling to specific number of bases not reads?
reads bases fastq downsample seqtk written 19 days ago by jnowacki • 70 • updated 19 days ago by genomax ♦ 74k
3
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0
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288
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0
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bwa mem -R (RGline) format for DNBseq fastq
wgs dnbseq bwa mem fastq bwa written 11 weeks ago by joe • 120 • updated 23 days ago by Biostar ♦♦ 20
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16 follow
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Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 8 months ago by Phil Ewels • 460 • updated 25 days ago by psschlogl • 20
0
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1
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92
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1
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Aligning multiple Fastq files using Bowtie2
bowtie2 fastq alignment rna-seq written 26 days ago by deepak18 • 10 • updated 26 days ago by WouterDeCoster ♦ 42k
2
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0
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170
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0
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Bowtie2 Error: *.* has more quality values than read characters
software error bowtie2 fastq written 9 weeks ago by rbronste • 290 • updated 26 days ago by Biostar ♦♦ 20
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1
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126
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1
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Problem with N sequences in fastqc file
fastq fastqc written 28 days ago by carina2817 • 10 • updated 28 days ago by yztxwd • 170
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1
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7.0k
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1
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Ion Torrent Fastq Format Type?
ion-torrent fastq written 7.6 years ago by Ian ♦ 5.5k • updated 29 days ago by lakhujanivijay ♦ 4.5k
2
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1
answer
149
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1
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 10 weeks ago by demolidd77 • 40 • updated 4 weeks ago by Biostar ♦♦ 20
1
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1
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1.5k
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1
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How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 3.9 years ago by Yuka Takemon • 20 • updated 4 weeks ago by ATpoint ♦ 25k
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100
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0
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 4 weeks ago by SSK • 0
8
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2
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162
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6 follow
2
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Is it possible to retrieve the original reads from a BAM file?
fastq next-gen bam written 5 weeks ago by elcortegano • 10 • updated 5 weeks ago by ctseto • 250
0
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0
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96
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0
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How to performs genome assembly of multiple phages in one Fastq single-end file?
genome assembly fastq written 5 weeks ago by DanielC • 100
0
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1
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155
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1
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This File Contains Inconsistent Headers
fastq fastq headers fastq trimming written 6 weeks ago by gtasource • 30 • updated 6 weeks ago by swbarnes2 ♦ 6.9k
0
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0
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101
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0
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ENA Run Submission Error (Inaccessible file)
fastq ena dna written 6 weeks ago by jfy133 • 0
3
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2
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118
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2
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FASTX Trimming First and Last X Bases
fastq fastx trimming written 6 weeks ago by gtasource • 30 • updated 6 weeks ago by genomax ♦ 74k
0
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0
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110
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0
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PacBio ccs fastq files
demultplex fastq next-gen written 7 weeks ago by channen1221 • 0
0
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1
answer
193
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1
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concatenating FASTQ forward and reverse reads in Snakemake
reads fastq forward concatenate bash written 7 weeks ago by Hansen_869 • 10 • updated 7 weeks ago by Eric Lim • 1.6k
3
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3
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198
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5 follow
3
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How can I add Sample Identifier to paired fastq file names
fastq written 7 weeks ago by Tawny • 130
2
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1
answer
168
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1
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Re-mapping contigs or predicted genes?
genome alignment fastq sequence fasta written 8 weeks ago by Hansen_869 • 10 • updated 8 weeks ago by Joe ♦ 14k
3
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1
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116
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1
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Confusion with 2nd Read pair SRA download
sra fastq paired reads written 8 weeks ago by jaqx008 • 60
5
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1
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209
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1
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How to run spades.py for multiple files(fastq) at once?
assembly loop sequence fastq spades written 8 weeks ago by subrahmanya • 0
2
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1
answer
121
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1
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issue with fastQ reads download from NCBI-SRA database?
ncbi sra fastq ngs sequencing written 9 weeks ago by Dineshkumar K • 30 • updated 8 weeks ago by Researcher • 50
31
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5
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12k
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8 follow
5
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Quick One Liner For Fastq Header Renaming
fastq awk written 6.6 years ago by Josh Herr ♦ 5.7k • updated 9 weeks ago by ATpoint ♦ 25k
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