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<prev • 652 results • page 1 of 22 • next >
4
votes
2
answers
93
views
2
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convert paired fastq files to fasta with EMBOSS:seqret or FASTX-toolkit:fastq_to_fasta
fasta fastq fastx emboss conversion written 1 day ago by marongiu.luigi • 340 • updated 1 day ago by finswimmer ♦ 7.0k
6
votes
1
answer
625
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6 follow
1
answer
Merge FastQ Files
fastq rna-seq written 11 months ago by shounak.chakraborty1990 • 0 • updated 2 days ago by Biostar ♦♦ 20
5
votes
1
answer
160
views
5 follow
1
answer
Split a sequence in a fastq file
sequence fastq next-gen sequencing written 3 days ago by ste.lu • 20 • updated 3 days ago by Pierre Lindenbaum ♦ 114k
1
vote
0
answers
64
views
0
answers
Why are file names deleted during submission of RNA-seq data to ENA, after disabling editor mode.
fastq rna-seq ena written 7 days ago by caggtaagtat • 370
0
votes
1
answer
584
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1
answer
bioawk output in original fastq format
fastq bioawk written 15 months ago by weixiaokuan • 80 • updated 15 days ago by Stephane Plaisance • 370
1
vote
1
answer
1.2k
views
1
answer
What does yield refer to in demultiplexing statistics
rnaseq ngs fastq yeild demultiplexing written 3.1 years ago by bioinforesearchquestions • 180 • updated 18 days ago by astropan • 0
3
votes
1
answer
131
views
1
answer
Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 20 days ago by ovon • 20 • updated 20 days ago by finswimmer ♦ 7.0k
4
votes
1
answer
133
views
1
answer
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
bam2fastq bam fastq conversion rna-seq written 22 days ago by rodd • 20 • updated 21 days ago by swbarnes2 ♦ 4.5k
0
votes
1
answer
112
views
1
answer
BAM file doesn't show the altered sample identifier
fastq bam written 22 days ago by Badh2 • 0 • updated 22 days ago by finswimmer ♦ 7.0k
0
votes
0
answers
139
views
0
answers
Split oxford nanopore MinION fastq file based on barcode
barcode fastq minion oxford nanopore minion split written 28 days ago by ambi1999 • 30 • updated 28 days ago by WouterDeCoster ♦ 34k
1
vote
1
answer
106
views
1
answer
De-duplicate UMI at FASTQ level
umi fastq written 29 days ago by jomo018 • 440 • updated 29 days ago by i.sudbery • 2.7k
3
votes
0
answers
107
views
0
answers
Merging fastq files
illumina fastq miseq merge rna-seq written 4 weeks ago by william.mcentegart • 0
1
vote
3
answers
3.5k
views
8 follow
3
answers
Extracting Read Pairs From Region So That All Pairs Remain Intact
fastq picard samtools bam written 5.2 years ago by Davy • 360 • updated 5 weeks ago by cmdcolin • 930
6
votes
2
answers
121
views
2
answers
Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq written 5 weeks ago by Pin.Bioinf • 170 • updated 5 weeks ago by geek_y ♦ 8.8k
2
votes
0
answers
151
views
0
answers
ubam to fastq?
fastq ubam sequencing written 5 weeks ago by DK • 70 • updated 5 weeks ago by Pierre Lindenbaum ♦ 114k
3
votes
2
answers
131
views
5 follow
2
answers
how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 6 weeks ago by fanglujing • 30 • updated 5 weeks ago by t.kuilman • 700
17
votes
1
answer
2.6k
views
1
answer
Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fasta fastq seqkit tool written 2.1 years ago by shenwei356 ♦ 4.2k • updated 6 weeks ago by bio_d • 0
0
votes
0
answers
115
views
0
answers
Standard Deviation in Fastq
fastq statistic written 6 weeks ago by savscosta • 0 • updated 6 weeks ago by h.mon ♦ 21k
2
votes
0
answers
138
views
0
answers
samtools fastq compression
samtools fastq cram written 6 weeks ago by bsmith030465 • 100
2
votes
1
answer
217
views
1
answer
fastq file do not look as they should (running Hisat2)
fastq rna-seq hisat2 written 7 weeks ago by luzglongoria • 0
8
votes
1
answer
1.9k
views
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 20 months ago by eoin • 30 • updated 8 weeks ago by savscosta • 0
1
vote
1
answer
1.6k
views
1
answer
I can't convert the sam file to fastq file.
fastq sam written 2.8 years ago by porori3000 • 0 • updated 8 weeks ago by RamRS ♦ 19k
0
votes
0
answers
165
views
0
answers
PSMC: fq2psmc conversion problems
psmcfa psmc fastq conversion written 8 weeks ago by miles.thorburn • 10 • updated 8 weeks ago by h.mon ♦ 21k
4
votes
3
answers
1.2k
views
3
answers
What size should I expect from a SFF file?
viewer editor fastq sff free written 4.5 years ago by BioApps • 720 • updated 8 weeks ago by Biostar ♦♦ 20
4
votes
2
answers
259
views
2
answers
What is the next step after download the ncbi sra data of pacbio RSII sequencing
sra fastq pacbio written 9 weeks ago by Sparrow_kop • 190 • updated 9 weeks ago by harish • 130
2
votes
2
answers
1.8k
views
2
answers
fastq-dump download pair-end fastq without split-files
fastq-dupm fastq split-files pair-end written 2.7 years ago by Shicheng Guo • 7.1k • updated 9 weeks ago by RamRS ♦ 19k
10
votes
2
answers
262
views
2
answers
Why do R1 and R2 compressed files have different size
fastq gzip written 9 weeks ago by MAPK • 1.3k • updated 9 weeks ago by dariober ♦ 9.7k
8
votes
2
answers
272
views
2
answers
Extract fastq sequences based on date/time (which is in the header)
fastq sequence written 9 weeks ago by a.b.g • 0 • updated 9 weeks ago by WouterDeCoster ♦ 34k
13
votes
0
answers
1.0k
views
10 follow
0
answers
Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 4 months ago by ATpoint ♦ 9.5k
9
votes
2
answers
355
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2
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How to append the cell barcode and UMI information to the fastq header in paired-end single-cell RNA-seq data?
single-cell fastq sequence rna-seq written 10 weeks ago by sc243 • 0
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