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<prev • 636 results • page 1 of 22 • next >
4
votes
3
answers
1.2k
views
3
answers
What size should I expect from a SFF file?
viewer editor fastq sff free written 4.4 years ago by BioApps • 720 • updated 8 hours ago by Biostar ♦♦ 20
4
votes
2
answers
77
views
2
answers
What is the next step after download the ncbi sra data of pacbio RSII sequencing
sra fastq pacbio written 1 day ago by Sparrow_kop • 190 • updated 14 hours ago by harish • 130
2
votes
2
answers
1.7k
views
2
answers
fastq-dump download pair-end fastq without split-files
fastq-dupm fastq split-files pair-end written 2.6 years ago by Shicheng Guo • 6.5k • updated 4 days ago by Ram ♦ 17k
10
votes
2
answers
141
views
2
answers
Why do R1 and R2 compressed files have different size
fastq gzip written 6 days ago by MAPK • 1.3k • updated 5 days ago by dariober ♦ 9.4k
8
votes
2
answers
157
views
2
answers
Extract fastq sequences based on date/time (which is in the header)
fastq sequence written 7 days ago by a.b.g • 0 • updated 7 days ago by WouterDeCoster ♦ 32k
13
votes
0
answers
623
views
10 follow
0
answers
Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 10 weeks ago by ATpoint ♦ 7.4k
9
votes
2
answers
160
views
2
answers
How to append the cell barcode and UMI information to the fastq header in paired-end single-cell RNA-seq data?
single-cell fastq sequence rna-seq written 8 days ago by sc243 • 0
24
votes
3
answers
9.8k
views
7 follow
3
answers
Filtering Paired End Reads
filter fastq fastx written 8.2 years ago by brentp ♦ 22k • updated 9 days ago by Ram ♦ 17k
4
votes
2
answers
4.6k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 8.2 years ago by Michael Dondrup ♦ 44k • updated 10 days ago by Ram ♦ 17k
6
votes
2
answers
3.0k
views
2
answers
How Do I Create A Seqrecord In Biopython?
fastq biopython written 8.4 years ago by Jeremy Leipzig ♦ 17k • updated 12 days ago by Ram ♦ 17k
13
votes
3
answers
6.4k
views
3
answers
What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 8.4 years ago by Allpowerde • 1.2k • updated 12 days ago by Ram ♦ 17k
28
votes
5
answers
8.1k
views
12 follow
5
answers
Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
python fastq next-gen biopython sequencing written 8.4 years ago by Darked89 ♦ 4.2k • updated 12 days ago by Ram ♦ 17k
16
votes
2
answers
1.3k
views
2
answers
what happened to ea-utils?
fastq ea-utils written 2.2 years ago by igor ♦ 6.5k • updated 13 days ago by Biostar ♦♦ 20
6
votes
3
answers
1.6k
views
5 follow
3
answers
How Can A Base-Called Position Be "Unknown" But Have A Non-Minimal Score?
fastq written 8.5 years ago by Jeremy Leipzig ♦ 17k • updated 13 days ago by Ram ♦ 17k
2
votes
1
answer
161
views
1
answer
How to convert fastq to cram, and from cram back to fastq
fastq cram written 21 days ago by Niek De Klein • 2.4k • updated 21 days ago by finswimmer ♦ 5.3k
3
votes
2
answers
487
views
2
answers
AB1 to FASTQ
fastq ab1 conversion written 5 months ago by DK • 70 • updated 4 weeks ago by trausch • 1.1k
10
votes
0
answers
148
views
5 follow
0
answers
Can two mates have different file size?
fastq sequencing written 5 weeks ago by marongiu.luigi • 300
9
votes
1
answer
295
views
6 follow
1
answer
How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 3 months ago by 2405592M • 10
12
votes
8
answers
16k
views
10 follow
8
answers
How to count fastq reads
reads sequence fastq next-gen written 3.4 years ago by Chenglin • 90 • updated 5 weeks ago by johnsonnathant • 0
3
votes
0
answers
186
views
6 follow
0
answers
Tool: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
compress repaq fastq tool written 5 weeks ago by chen • 1.7k
3
votes
1
answer
121
views
1
answer
How do you convert single end sam file to fastq?
samtfastq fastq sam written 6 weeks ago by MAPK • 1.3k • updated 6 weeks ago by Pierre Lindenbaum ♦ 112k
17
votes
0
answers
8.6k
views
16 follow
0
answers
Tool: Tools to merge overlapping paired-end reads
assembly overlapping ngs fastq tool written 21 months ago by Abdul Rafay Khan • 880 • updated 7 weeks ago by kate.j.mckenzie • 0
0
votes
1
answer
1.2k
views
1
answer
Microbiome 16s sequencing raw data analysis
microbiome 16s next-gen fastq qiime written 17 months ago by aidpranculis • 0 • updated 7 weeks ago by gtrwst9 • 0
4
votes
2
answers
173
views
6 follow
2
answers
How do you get rid of reads with matching pattern in fastq
fastq written 7 weeks ago by MAPK • 1.3k • updated 7 weeks ago by genomax ♦ 55k
8
votes
2
answers
243
views
7 follow
2
answers
Command to count reads in fastq file with last bases
fastq readcount written 7 weeks ago by MAPK • 1.3k • updated 7 weeks ago by Eric Lim • 960
8
votes
3
answers
202
views
3
answers
Separate unaligned reads in fastq format using bowtie
fastq bowtie written 7 weeks ago by MAPK • 1.3k
33
votes
5
answers
6.4k
views
13 follow
5
answers
Which C++ Libraries Are Best For Dealing With Fastq Files?
fastq next-gen C sequencing written 8.5 years ago by Jeremy Leipzig ♦ 17k • updated 7 weeks ago by cartoonist • 20
9
votes
4
answers
895
views
4
answers
Cases where indexing is efficient for read retrieval
read fastq speed database index written 3.2 years ago by blaise.li__biostars • 50 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
163
views
0
answers
Find adapter sequences
fasta adapter sequencing fastq fastqc written 9 weeks ago by science_lizard • 0
3
votes
2
answers
217
views
2
answers
How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 9 weeks ago by MAPK • 1.3k • updated 9 weeks ago by sschmeier • 80
<prev • 636 results • page 1 of 22 • next >
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