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14
votes
3
answers
166
views
3
answers
How to merge multiple fastq file using table?
fastq cat bash written 1 day ago by rimgubaev • 120
0
votes
2
answers
537
views
2
answers
Trying to Identify larger indels from NGS data, FASTQ format
rad-seq fasta ngs fastq dna written 11 months ago by alice_pieplow • 0 • updated 1 day ago by geocarvalho • 110
0
votes
0
answers
51
views
0
answers
Segmentation fault (core dumped) in SOAP
assembly fastq sequence soap written 1 day ago by choi.yisoo.hi • 0
2
votes
2
answers
146
views
2
answers
How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 4 days ago by Beginner • 0 • updated 2 days ago by emeline.a.favreau • 10
2
votes
1
answer
89
views
1
answer
Download data from GEO/SRA using link
geo sra fastq written 10 days ago by rioualen • 330 • updated 10 days ago by genomax ♦ 65k
2
votes
0
answers
80
views
0
answers
RNASeq analysis, FastQC how to solve warning and fail
rnaseq fastq fastqc ngs duplication written 10 days ago by Kian • 40
0
votes
0
answers
57
views
0
answers
Quast shows different reads count for the same fastq file?
reads fastq contig quast written 11 days ago by DanielC • 80
1
vote
1
answer
83
views
1
answer
bbmerge merged read smaller that original reads
bbmerge fastq alignment flash vsearch written 14 days ago by snishtala03 • 10 • updated 14 days ago by RamRS ♦ 21k
3
votes
2
answers
142
views
5 follow
2
answers
Are the Fastq files content is truly random
illumina fastq hiseq written 18 days ago by yonis • 0 • updated 18 days ago by Istvan Albert ♦♦ 80k
1
vote
1
answer
81
views
1
answer
Picard error: Sequences at index 0 don't match
genome fastq picard don't match index written 18 days ago by zachariasawaged • 0 • updated 18 days ago by swbarnes2 ♦ 5.2k
4
votes
1
answer
106
views
1
answer
How to deal with AB SOLiD paired end reads?
fastq alignment rna-seq ab solid written 18 days ago by biock • 0 • updated 18 days ago by h.mon ♦ 24k
1
vote
0
answers
94
views
0
answers
slurm Exceeded step memory limit: Interleaving FastQ files
fastq slurm written 19 days ago by Biogeek • 340
1
vote
1
answer
104
views
1
answer
Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 21 days ago by Ankit • 70 • updated 21 days ago by gb • 610
3
votes
2
answers
102
views
2
answers
How to use BBMap's reformat.sh to correctly interleaved reads?
genome fastq next-gen mapping written 23 days ago by O.rka • 90 • updated 23 days ago by h.mon ♦ 24k
0
votes
1
answer
113
views
1
answer
working with Sanger fasta + qual + clip files
sanger trimming fastq written 29 days ago by sullis02 • 0 • updated 29 days ago by JC ♦ 7.7k
1
vote
1
answer
84
views
1
answer
Running 3 FASTQ files for WGBS
fastq methylation wgbs written 4 weeks ago by Batu • 110
3
votes
1
answer
224
views
1
answer
How can I split WES FASTQ file into sub-files for each chromosome ?
fastq wes split chromosome written 5 weeks ago by Laven9 • 0
7
votes
1
answer
141
views
1
answer
SRA from NCBI?
ncbi sra fastq rna-seq written 5 weeks ago by star • 140
2
votes
1
answer
150
views
1
answer
Can't run fastqc in cmd windows
fastq windows written 5 weeks ago by anasofiamoreira94 • 30
1
vote
0
answers
476
views
0
answers
PSMC: fq2psmc conversion problems
psmcfa psmc fastq conversion written 7 months ago by miles.thorburn • 80 • updated 5 weeks ago by h.mon ♦ 24k
0
votes
0
answers
130
views
0
answers
search multiple sequences in multiple fastqs
fastq sequencing written 5 weeks ago by max_19 • 50
0
votes
4
answers
142
views
6 follow
4
answers
How to access specifically 30x NA12878 sequencing runs
wgs giab data-access fastq benchmark written 6 weeks ago by Fungsten • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 119k
0
votes
1
answer
113
views
1
answer
fastq reads cleaning
reads fastq cleaning written 6 weeks ago by blueskypie • 30
7
votes
2
answers
140
views
6 follow
2
answers
Simple FASTQ/A manipulation... how to add a single adapter sequence to 5' of all reads?
fasta fastq written 6 weeks ago by quickquark • 0
1
vote
1
answer
1.5k
views
1
answer
What does yield refer to in demultiplexing statistics
rnaseq ngs fastq yeild demultiplexing written 3.5 years ago by bioinforesearchquestions • 200 • updated 6 weeks ago by bmahesh07 • 0
8
votes
2
answers
224
views
2
answers
awk or/and cut command for reformatting sequence header identifiers of fastq file
fastq header identifiers reformat written 6 weeks ago by qinglong • 10 • updated 6 weeks ago by c_dampier • 50
2
votes
2
answers
224
views
2
answers
Extract overrepresented sequences from fastq or fastqc
fastq overrepresented rna-seq fastqc written 7 weeks ago by michele.tebaldi.92 • 0 • updated 7 weeks ago by Ido Tamir ♦ 5.0k
1
vote
1
answer
130
views
1
answer
How to take out sequences with barcode?
illumina fastq sequencing barcode written 7 weeks ago by suvratha • 20 • updated 7 weeks ago by Ido Tamir ♦ 5.0k
26
votes
0
answers
3.0k
views
25 follow
0
answers
Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 9 months ago by ATpoint ♦ 15k
20
votes
0
answers
308
views
10 follow
0
answers
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 7 weeks ago by Phil Ewels • 380
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