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<prev • 153 results • page 1 of 6 • next >
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Calculating FPKM for large number of samples mapped to co-assembly
assembly metagenomics next-gen fpkm sequencing written 25 days ago by arla_21 • 0
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3
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89k
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28 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.0 years ago by biorepine • 1.4k • updated 4 months ago by Renesh • 1.8k
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244
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RSEM Error - rsem-calculate-expression
rsem-calculate-expression fpkm rsem rna-seq written 4 months ago by anoo • 0 • updated 4 months ago by h.mon ♦ 29k
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3
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205
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3
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Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 4 months ago by tpaboh • 0
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Cox proportional hazards regression use log2 fpkm
fpkm cox written 5 months ago by MatthewP • 410 • updated 5 months ago by dsull • 1.0k
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336
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Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 6 months ago by hkarakurt • 90 • updated 6 months ago by shoujun.gu • 290
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264
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In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 6 months ago by Rajinder Gupta • 10
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297
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How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 7 months ago by LuisNagano • 40 • updated 7 months ago by ATpoint ♦ 32k
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 18 months ago by hxlei613 • 90 • updated 8 months ago by Biostar ♦♦ 20
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8 follow
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 8 months ago by zhaoliang0302 • 0 • updated 8 months ago by kristoffer.vittingseerup • 3.0k
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FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 5.3 years ago by Ron • 990 • updated 9 months ago by Biostar ♦♦ 20
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 4.1 years ago by lidia.mateo • 0 • updated 9 months ago by Biostar ♦♦ 20
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Converting FPKM values to raw read counts
R fpkm rna-seq written 9 months ago by Mohamed Omar • 10
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 11 months ago by Joel Wallenius • 70 • updated 10 months ago by Biostar ♦♦ 20
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1
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407
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 10 months ago by jordan.mandel • 0 • updated 10 months ago by h.mon ♦ 29k
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1
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how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 11 months ago by doaamohamedsamir • 0 • updated 11 months ago by Bastien Hervé ♦ 4.5k
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5 follow
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 18 months ago by Biologist • 190 • updated 11 months ago by Ahmed Alhendi • 40
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4.2k
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How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 2.8 years ago by manish20072013 • 0 • updated 12 months ago by Ahmed Alhendi • 40
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9.8k
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11 follow
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 3.1 years ago by Fill • 70 • updated 12 months ago by Ahmed Alhendi • 40
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 13 months ago by elmahy2005 • 80 • updated 13 months ago by h.mon ♦ 29k
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2.4k
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3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 2.4 years ago by Silvia • 10 • updated 14 months ago by Charles Warden ♦ 7.6k
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3
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2.3k
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5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 2.9 years ago by alexahes • 10 • updated 14 months ago by Charles Warden ♦ 7.6k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 14 months ago by Susmita Mandal • 60 • updated 14 months ago by johnsonnathant • 80
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which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 15 months ago by yff • 0
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2
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1.7k
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5 follow
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 15 months ago by carolgalah • 0 • updated 15 months ago by dz2353 • 90
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 16 months ago by hxlei613 • 90 • updated 16 months ago by Devon Ryan ♦ 94k
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.6 years ago by bassanio • 20 • updated 17 months ago by Biostar ♦♦ 20
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1.1k
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5 follow
2
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TPKM vs FPKM
fpkm rna-seq written 17 months ago by nanoide • 40 • updated 17 months ago by ATpoint ♦ 32k
4
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1
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523
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6 follow
1
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Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 17 months ago by Maryam • 50
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 18 months ago by AnneC • 0 • updated 18 months ago by Kevin Blighe ♦ 56k
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