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10
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 12 days ago by shenwei1376 • 0 • updated 9 days ago by Charles Warden ♦ 5.0k
4
votes
1
answer
117
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1
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Question about Fpkm sum
fpkm rna-seq written 4 weeks ago by lyrae • 0 • updated 4 weeks ago by h.mon ♦ 15k
3
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1
answer
145
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1
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data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 6 weeks ago by modarzi • 20 • updated 6 weeks ago by Kevin Blighe ♦ 22k
2
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1
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218
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1
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Calculating fpkm from raw counts
R fpkm rna-seq written 8 weeks ago by vinayjrao • 100
0
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1
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189
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1
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RNA-seq of two non-model species: differential expression and FPKM
fpkm compatative transcriptomics rna-seq written 3 months ago by maxnest • 0 • updated 3 months ago by c.chakraborty • 70
1
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1
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325
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1
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Formula to calculate FPKM
fpkm rna-seq written 3 months ago by vinayjrao • 100 • updated 3 months ago by Rahul Sharma • 540
0
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235
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0
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ChIP-seq output to FPKM
fpkm chip-seq written 4 months ago by Clara • 0
48
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3
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14k
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43 follow
3
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 4.7 years ago by Irsan • 6.6k • updated 4 months ago by lhdcsu • 10
1
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1
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378
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1
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RNA-seq heatmap output order
fpkm cluster 3.0 rna-seq heatmap written 5 months ago by Sathish • 30 • updated 5 months ago by Rashedul Islam • 220
2
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1
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486
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1
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 5 months ago by galozs • 20 • updated 5 months ago by Macspider • 2.4k
1
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2
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1.2k
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2
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How to plot PCA with fpkm values
pca plot rnaseq fpkm written 16 months ago by raya.girish • 20 • updated 5 months ago by Ram ♦ 15k
10
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0
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6.0k
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5 follow
0
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Cufflinks : Analysis Comparison With And Without A Gtf Reference File
fpkm cufflinks rna written 7.0 years ago by Hélène • 90 • updated 6 months ago by Biostar ♦♦ 20
4
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3
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697
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3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 7 months ago by Silvia • 0 • updated 7 months ago by igor ♦ 6.2k
0
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1
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1.1k
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1
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 2.3 years ago by lidia.mateo • 0 • updated 8 months ago by Zhao fei • 0
0
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1
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348
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1
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Is it possible to analyze together rna seq outputs from cufflinks and rsem?
fpkm cufflinks rna-seq rsem written 8 months ago by SandraGarcia • 0 • updated 8 months ago by Kevin Blighe ♦ 22k
0
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0
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563
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0
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Differential Expressed Genes by FPKM expression matrix
R fpkm rna-seq deg written 8 months ago by morteza.kouhsar • 0
1
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2
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2
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Accessing Expression Levels for Genes of Interest from GEO Experiments
geo fpkm rna rna-seq lncrna written 2.3 years ago by a.aiezza • 30 • updated 8 months ago by Biostar ♦♦ 20
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1
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1.1k
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1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 8 months ago by sd.gamboa.t • 0 • updated 8 months ago by Corentin • 130
9
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1
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7 follow
1
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heatmap using FPKM values
fpkm rna-seq written 16 months ago by ashish • 200 • updated 8 months ago by moldach • 60
0
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1
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481
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1
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Get FPKM across replicates without doing a differential expression
fpkm dna-seq rna-seq written 9 months ago by crouch.k • 10 • updated 8 months ago by Kevin Blighe ♦ 22k
37
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3
answers
66k
views
24 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.2 years ago by biorepine • 1.4k • updated 9 months ago by Renesh • 1.2k
11
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2
answers
7.8k
views
5 follow
2
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Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 2.7 years ago by Alex Reynolds ♦ 24k • updated 9 months ago by fabio-verdao • 0
3
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0
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1.5k
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0
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Calculating FPKM from HTSeq counts table
htseq R fpkm rna-seq written 9 months ago by ann081993 • 0
0
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0
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451
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0
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RNA-seq compare FPKM's or fold change of different organisms
fpkm gene expression foldchange rna-seq written 10 months ago by jehu • 20
2
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2
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3.2k
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2
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Cufflinks - Assigning Transcripts Or Exons
fpkm cufflinks rna-seq written 5.8 years ago by AW • 350 • updated 11 months ago by Biostar ♦♦ 20
1
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1
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343
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1
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Can FPKM in different compartment be added directly?
fpkm rna-seq written 11 months ago by xidianbill • 10 • updated 11 months ago by Devon Ryan ♦ 81k
2
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2
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578
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2
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how to calculate fpkm?
fpkm rna-seq written 11 months ago by vinayjrao • 100 • updated 11 months ago by Vijay Lakhujani ♦ 2.6k
0
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533
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0
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 12 months ago by s.herrera706 • 0
0
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1
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How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 12 months ago by manish20072013 • 0 • updated 12 months ago by Istvan Albert ♦♦ 77k
0
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793
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0
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stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 12 months ago by cpak1981 • 100
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