Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: fpkm • reset
or   Classic search
<prev • 115 results • page 1 of 4 • next >
0
votes
0
answers
131
views
0
answers
RNA-seq compare FPKM's or fold change of different organisms
fpkm gene expression foldchange rna-seq written 13 days ago by jehu • 10
2
votes
2
answers
2.8k
views
2
answers
Cufflinks - Assigning Transcripts Or Exons
fpkm cufflinks rna-seq written 5.0 years ago by AW • 280 • updated 26 days ago by Biostar ♦♦ 20
1
vote
1
answer
157
views
1
answer
Can FPKM in different compartment be added directly?
fpkm rna-seq written 4 weeks ago by xidianbill • 10 • updated 4 weeks ago by Devon Ryan ♦ 70k
2
votes
2
answers
153
views
2
answers
how to calculate fpkm?
fpkm rna-seq written 5 weeks ago by vinayjrao • 60 • updated 5 weeks ago by Vijay Lakhujani • 1.1k
0
votes
0
answers
191
views
0
answers
FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 7 weeks ago by s.herrera706 • 0
0
votes
1
answer
190
views
1
answer
How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 8 weeks ago by manish20072013 • 0 • updated 8 weeks ago by Istvan Albert ♦♦ 73k
0
votes
0
answers
158
views
0
answers
stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 8 weeks ago by cpak1981 • 20
4
votes
1
answer
242
views
7 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 11 weeks ago by jamieson.pierce • 10 • updated 11 weeks ago by Brian Bushnell ♦ 13k
2
votes
1
answer
238
views
1
answer
Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 3 months ago by rbronste • 140 • updated 3 months ago by Devon Ryan ♦ 70k
4
votes
1
answer
355
views
1
answer
Converting TPM to FPKM
fpkm tpm rna-seq written 3 months ago by alexahes • 10 • updated 3 months ago by karl.stamm ♦ 3.2k
5
votes
1
answer
265
views
5 follow
1
answer
Detecting isoforms in raw counts (or FPKM) after htseq-count
htseq-count fpkm rna-seq alternative splicing written 4 months ago by Fill • 70
2
votes
1
answer
255
views
1
answer
How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 5 months ago by JimiOli • 0 • updated 5 months ago by Carlo Yague • 3.1k
3
votes
1
answer
377
views
1
answer
Is log-transformation needed to calculate Euclidean distance metric from FPKM/TPM?
distance metric tpm fpkm clustering rna-seq written 5 months ago by MMa • 210 • updated 5 months ago by Petr Ponomarenko • 2.4k
1
vote
2
answers
448
views
2
answers
How to plot PCA with fpkm values
pca plot rnaseq fpkm written 5 months ago by raya.girish • 20 • updated 5 months ago by igor • 4.4k
0
votes
0
answers
215
views
0
answers
What does 'frac' mean in cufflinks output transcripts.gtf
fpkm cufflinkts frac written 5 months ago by Jackie • 40
4
votes
0
answers
454
views
0
answers
heatmap using FPKM values
fpkm rna-seq written 5 months ago by ashish • 110
8
votes
2
answers
1.2k
views
8 follow
2
answers
Calculating FPKM after htseq-count
htseq fpkm rna-seq written 5 months ago by Fill • 70
0
votes
0
answers
348
views
0
answers
Fragments Per Kilobase of transcript per Million mapped reads
fpkm cufflink written 6 months ago by sanathoi • 10
0
votes
0
answers
438
views
0
answers
Differential expression on Combat-adjusted FPKM
fpkm combat rna-seq differential expression written 8 months ago by mare116 • 0
0
votes
1
answer
466
views
1
answer
How do I find an example of how to calculate FPKM with cufflinks?
fpkm cufflinks written 8 months ago by blur • 50 • updated 8 months ago by vchris_ngs • 3.7k
1
vote
1
answer
523
views
1
answer
TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 10 months ago by ando.kelli • 30
2
votes
1
answer
720
views
1
answer
Tissue Specificity index (tau) should FPKM data be log transformed?
tau fpkm rna-seq written 12 months ago by microfuge • 710 • updated 11 months ago by kennethcondon2007 • 810
1
vote
1
answer
433
views
1
answer
cuffdiff "value_1" & "value_2", are they mean FPKM values from replicates for each condition?
fpkm cuffdiff rna-seq written 11 months ago by vivekananthrp • 0 • updated 11 months ago by Devon Ryan ♦ 70k
28
votes
2
answers
88k
views
20 follow
2
answers
How To Calculate Fpkm (Fragments Per Kilobase Of Exon Per Million Fragments Mapped)
rpkm fpkm rna written 6.4 years ago by User 5402 • 210 • updated 11 months ago by jokipokemon0001 • 0
8
votes
4
answers
1.1k
views
4
answers
PCA tpm fpkm
pca fpkm tpm written 11 months ago by riccardo • 40 • updated 11 months ago by Ar • 700
0
votes
0
answers
429
views
0
answers
Calculating FPKM of reads that overlap regions of interest
bedtools fpkm chip-seq written 12 months ago by AB • 60
1
vote
0
answers
451
views
0
answers
Top 20% expressed orthologus genes in two species
rpkm fpkm rna-seq written 14 months ago by Saad Khan • 310 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
452
views
0
answers
Please help me with the issue on FPKM value calculation and validation of transcriptome assembly
fpkm assembly validation qrt-pcr written 15 months ago by seta • 920 • updated 13 months ago by Biostar ♦♦ 20
11
votes
1
answer
2.5k
views
7 follow
1
answer
FPKM not suitable for DE?
normalization fpkm rna-seq written 3.2 years ago by nevev • 90 • updated 13 months ago by Biostar ♦♦ 20
0
votes
2
answers
890
views
2
answers
Length of transcripts of mm9
biomart fpkm rna-seq written 14 months ago by qwzhang0601 • 40 • updated 14 months ago by EagleEye • 4.5k
<prev • 115 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • USA/Tampa/Biotech, just now
  • McGill University, Montreal, Canada, just now
  • United Kingdom, 1 minute ago
  • Mexico, 2 minutes ago
  • UK, 5 minutes ago
  • Spain, 6 minutes ago
  • Pune, India, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1301 users visited in the last hour