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<prev • 159 results • page 1 of 6 • next >
3
votes
1
answer
25
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1
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RNA-Seq Data analysis
.tsv fpkm volcano plots salmon rna-seq written 1 hour ago by sujitsilas • 0 • updated 1 hour ago by dsull • 1.8k
1
vote
1
answer
234
views
1
answer
Normalize FPKM values for cross-sample comparisons?
normalization fpkm rna-seq written 11 weeks ago by cindy.perscheid • 100
5
votes
1
answer
1.9k
views
1
answer
Rna-Seq Expression For 3' Transcripts
fpkm rna written 9.1 years ago by Sander Timmer • 700 • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
135
views
1
answer
htseq-count without GTF?
htseq count fpkm htseq-count gtf written 3 months ago by blur • 150 • updated 3 months ago by ATpoint ♦ 44k
0
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0
answers
193
views
0
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Generating barplot of fpkm value
R fpkm rna-seq python written 3 months ago by sidrah.maryam • 20
65
votes
3
answers
20k
views
59 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 7.3 years ago by Irsan • 7.2k • updated 3 months ago by _r_am ♦ 32k
6
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2
answers
2.9k
views
2
answers
Clustering of genes using FPKM
R fpkm bioconductor clustering rna-seq written 6.1 years ago by Ron • 1.0k • updated 4 months ago by Hamid Ghaedi • 1.2k
1
vote
1
answer
967
views
1
answer
RSEM Error - rsem-calculate-expression
rsem-calculate-expression fpkm rsem rna-seq written 14 months ago by anoo • 0 • updated 4 months ago by svp • 410
0
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0
answers
212
views
0
answers
how to calculate p-value of Cuffdiff result?
p-value fpkm cuffdiff rna-seq written 5 months ago by dahun73 • 10 • updated 5 months ago by Biostar ♦♦ 20
2
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0
answers
3.2k
views
0
answers
Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.8 years ago by Nathan S. Watson-Haigh • 200 • updated 6 months ago by Biostar ♦♦ 20
1
vote
1
answer
224
views
1
answer
how to analyze/integrate methylation "beta value" and RNA-seq "FPKM" data from only one cell line
beta value omics fpkm integration rna-seq written 6 months ago by maria2019 • 130
0
votes
0
answers
279
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0
answers
Calculating FPKM for large number of samples mapped to co-assembly
assembly metagenomics next-gen fpkm sequencing written 10 months ago by arla_21 • 0
46
votes
3
answers
96k
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30 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.8 years ago by biorepine • 1.5k • updated 14 months ago by Renesh • 1.9k
6
votes
3
answers
606
views
3
answers
Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 14 months ago by tpaboh • 0
7
votes
1
answer
694
views
1
answer
Cox proportional hazards regression use log2 fpkm
fpkm cox written 14 months ago by MatthewP • 850 • updated 14 months ago by dsull • 1.8k
2
votes
2
answers
959
views
2
answers
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 15 months ago by hkarakurt • 100 • updated 15 months ago by shoujun.gu • 310
2
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0
answers
716
views
0
answers
In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 16 months ago by Rajinder Gupta • 10
3
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0
answers
728
views
0
answers
How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 16 months ago by LuisNagano • 80 • updated 16 months ago by ATpoint ♦ 44k
0
votes
1
answer
1.4k
views
1
answer
Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 2.3 years ago by hxlei613 • 90 • updated 17 months ago by Biostar ♦♦ 20
11
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2
answers
3.0k
views
8 follow
2
answers
How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 18 months ago by zhaoliang0302 • 10 • updated 18 months ago by kristoffer.vittingseerup • 3.5k
0
votes
1
answer
1.9k
views
1
answer
FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 6.1 years ago by Ron • 1.0k • updated 18 months ago by Biostar ♦♦ 20
0
votes
1
answer
2.0k
views
1
answer
comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 4.9 years ago by lidia.mateo • 0 • updated 18 months ago by Biostar ♦♦ 20
1
vote
0
answers
757
views
0
answers
Converting FPKM values to raw read counts
R fpkm rna-seq written 19 months ago by Mohamed Omar • 10
0
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0
answers
2.0k
views
0
answers
Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 21 months ago by Joel Wallenius • 70 • updated 20 months ago by Biostar ♦♦ 20
0
votes
1
answer
891
views
1
answer
Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 20 months ago by jordan.mandel • 0 • updated 20 months ago by h.mon ♦ 32k
0
votes
1
answer
385
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1
answer
how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 20 months ago by doaamohamedsamir • 0 • updated 20 months ago by Bastien Hervé ♦ 4.9k
2
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3
answers
4.8k
views
5 follow
3
answers
How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 2.3 years ago by Biologist • 190 • updated 21 months ago by Ahmed Alhendi • 50
2
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2
answers
6.3k
views
2
answers
How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 3.6 years ago by manish20072013 • 10 • updated 21 months ago by Ahmed Alhendi • 50
9
votes
2
answers
12k
views
11 follow
2
answers
Calculating FPKM after htseq-count
htseq fpkm rna-seq written 3.9 years ago by Fill • 70 • updated 22 months ago by Ahmed Alhendi • 50
7
votes
1
answer
434
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1
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 23 months ago by elmahy2005 • 100 • updated 23 months ago by h.mon ♦ 32k
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