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<prev • 154 results • page 1 of 6 • next >
41
votes
3
answers
85k
views
28 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.7 years ago by biorepine • 1.4k • updated 18 days ago by Renesh • 1.8k
0
votes
0
answers
139
views
0
answers
RSEM Error - rsem-calculate-expression
rsem-calculate-expression fpkm rsem rna-seq written 25 days ago by anoo • 0 • updated 24 days ago by h.mon ♦ 28k
6
votes
3
answers
97
views
3
answers
Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 28 days ago by tpaboh • 0
7
votes
1
answer
170
views
1
answer
Cox proportional hazards regression use log2 fpkm
fpkm cox written 6 weeks ago by MatthewP • 330 • updated 5 weeks ago by dsull • 630
2
votes
2
answers
179
views
2
answers
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 10 weeks ago by hkarakurt • 80 • updated 10 weeks ago by shoujun.gu • 250
2
votes
0
answers
140
views
0
answers
In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 12 weeks ago by Rajinder Gupta • 10
2
votes
0
answers
202
views
0
answers
How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 3 months ago by LuisNagano • 30 • updated 3 months ago by ATpoint ♦ 26k
0
votes
1
answer
755
views
1
answer
Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 14 months ago by hxlei613 • 90 • updated 4 months ago by Biostar ♦♦ 20
11
votes
2
answers
422
views
8 follow
2
answers
How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 5 months ago by zhaoliang0302 • 0 • updated 4 months ago by kristoffer.vittingseerup • 2.9k
0
votes
1
answer
1.7k
views
1
answer
FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 5.0 years ago by Ron • 990 • updated 5 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.7k
views
1
answer
comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 3.8 years ago by lidia.mateo • 0 • updated 5 months ago by Biostar ♦♦ 20
1
vote
0
answers
253
views
0
answers
Converting FPKM values to raw read counts
R fpkm rna-seq written 6 months ago by Mohamed Omar • 10
0
votes
0
answers
657
views
0
answers
Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 8 months ago by Joel Wallenius • 70 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
296
views
1
answer
Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 6 months ago by jordan.mandel • 0 • updated 6 months ago by h.mon ♦ 28k
0
votes
1
answer
198
views
1
answer
how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 7 months ago by doaamohamedsamir • 0 • updated 7 months ago by Bastien Hervé ♦ 4.5k
2
votes
3
answers
2.0k
views
5 follow
3
answers
How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 14 months ago by Biologist • 190 • updated 8 months ago by Ahmed Alhendi • 30
2
votes
2
answers
3.6k
views
2
answers
How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 2.5 years ago by manish20072013 • 0 • updated 8 months ago by Ahmed Alhendi • 30
9
votes
2
answers
9.0k
views
11 follow
2
answers
Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.8 years ago by Fill • 70 • updated 8 months ago by Ahmed Alhendi • 30
7
votes
1
answer
286
views
1
answer
Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 10 months ago by elmahy2005 • 40 • updated 10 months ago by h.mon ♦ 28k
7
votes
3
answers
2.2k
views
3
answers
FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 2.1 years ago by Silvia • 10 • updated 10 months ago by Charles Warden ♦ 7.5k
7
votes
3
answers
2.0k
views
5 follow
3
answers
Converting TPM to FPKM
fpkm tpm rna-seq written 2.6 years ago by alexahes • 10 • updated 10 months ago by Charles Warden ♦ 7.5k
6
votes
2
answers
1.3k
views
9 follow
2
answers
What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 11 months ago by Susmita Mandal • 60 • updated 11 months ago by johnsonnathant • 80
0
votes
0
answers
391
views
0
answers
which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 11 months ago by yff • 0
11
votes
2
answers
1.3k
views
5 follow
2
answers
FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 12 months ago by carolgalah • 0 • updated 12 months ago by dz2353 • 80
2
votes
1
answer
653
views
1
answer
What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 12 months ago by hxlei613 • 90 • updated 12 months ago by Devon Ryan ♦ 93k
0
votes
1
answer
3.0k
views
1
answer
Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.3 years ago by bassanio • 20 • updated 13 months ago by Biostar ♦♦ 20
10
votes
2
answers
934
views
5 follow
2
answers
TPKM vs FPKM
fpkm rna-seq written 13 months ago by nanoide • 30 • updated 13 months ago by ATpoint ♦ 26k
3
votes
1
answer
436
views
1
answer
Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 14 months ago by Maryam • 40
0
votes
1
answer
1.1k
views
1
answer
calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 14 months ago by AnneC • 0 • updated 14 months ago by Kevin Blighe ♦ 52k
1
vote
2
answers
1.7k
views
2
answers
TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 3.2 years ago by ando.kelli • 40 • updated 14 months ago by egtabilin • 0
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