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<prev • 143 results • page 1 of 5 • next >
7
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1
answer
103
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1
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 6 days ago by elmahy2005 • 30 • updated 5 days ago by h.mon ♦ 23k
5
votes
3
answers
1.3k
views
3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 15 months ago by Silvia • 10 • updated 9 days ago by Charles Warden ♦ 6.1k
7
votes
3
answers
1.3k
views
5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 21 months ago by alexahes • 10 • updated 21 days ago by Charles Warden ♦ 6.1k
6
votes
2
answers
192
views
9 follow
2
answers
What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 5 weeks ago by Susmita Mandal • 20 • updated 5 weeks ago by johnsonnathant • 80
0
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0
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137
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0
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which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 6 weeks ago by yff • 0
11
votes
2
answers
296
views
5 follow
2
answers
FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 9 weeks ago by carolgalah • 0 • updated 9 weeks ago by dz2353 • 50
2
votes
1
answer
249
views
1
answer
What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 11 weeks ago by hxlei613 • 80 • updated 11 weeks ago by Devon Ryan ♦ 88k
0
votes
1
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2.7k
views
1
answer
Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.5 years ago by vinumanikandan • 0 • updated 3 months ago by Biostar ♦♦ 20
10
votes
2
answers
401
views
5 follow
2
answers
TPKM vs FPKM
fpkm rna-seq written 4 months ago by nanoide • 10 • updated 4 months ago by ATpoint ♦ 13k
3
votes
1
answer
196
views
1
answer
Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 4 months ago by Maryam • 40
0
votes
1
answer
254
views
1
answer
Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 4 months ago by hxlei613 • 80 • updated 4 months ago by Kevin Blighe ♦ 37k
0
votes
1
answer
322
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1
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 4 months ago by AnneC • 0 • updated 4 months ago by Kevin Blighe ♦ 37k
0
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2
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527
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2
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 4 months ago by Biologist • 140 • updated 4 months ago by h.mon ♦ 23k
1
vote
2
answers
1.3k
views
2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.4 years ago by ando.kelli • 40 • updated 5 months ago by egtabilin • 0
6
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2
answers
2.6k
views
2
answers
RNA seq results as fpkm
fpkm rna-seq sequencing written 3.0 years ago by charbel.feghaly • 10 • updated 5 months ago by RamRS ♦ 20k
2
votes
1
answer
446
views
1
answer
FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 5 months ago by Vasu • 300 • updated 5 months ago by Adrian Pelin • 2.2k
2
votes
2
answers
1.0k
views
2
answers
problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 2.8 years ago by nazaninhoseinkhan • 360 • updated 5 months ago by Biostar ♦♦ 20
1
vote
0
answers
817
views
0
answers
FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 20 months ago by s.herrera706 • 0 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
354
views
1
answer
Why survival plots look different with same data?
survivalanalysis tcga fpkm survival rna-seq written 6 months ago by Biologist • 140 • updated 6 months ago by Friederike ♦ 2.6k
8
votes
0
answers
603
views
0
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 6 months ago by nanoide • 10
10
votes
1
answer
477
views
1
answer
calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 8 months ago by shenwei1376 • 0 • updated 8 months ago by Charles Warden ♦ 6.1k
4
votes
1
answer
370
views
1
answer
Question about Fpkm sum
fpkm rna-seq written 9 months ago by lyrae • 0 • updated 9 months ago by h.mon ♦ 23k
4
votes
1
answer
597
views
1
answer
data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 9 months ago by modarzi • 60 • updated 9 months ago by Kevin Blighe ♦ 37k
2
votes
1
answer
1.5k
views
1
answer
Calculating fpkm from raw counts
R fpkm rna-seq written 9 months ago by vinayjrao • 110
0
votes
1
answer
442
views
1
answer
RNA-seq of two non-model species: differential expression and FPKM
fpkm compatative transcriptomics rna-seq written 11 months ago by maxnest • 10 • updated 11 months ago by c.chakraborty • 110
1
vote
1
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1.7k
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1
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Formula to calculate FPKM
fpkm rna-seq written 11 months ago by vinayjrao • 110 • updated 11 months ago by Rahul Sharma • 560
0
votes
0
answers
448
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0
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ChIP-seq output to FPKM
fpkm chip-seq written 12 months ago by Clara • 0
50
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3
answers
16k
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48 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 5.3 years ago by Irsan • 6.8k • updated 12 months ago by lhdcsu • 10
1
vote
1
answer
618
views
1
answer
RNA-seq heatmap output order
fpkm cluster 3.0 rna-seq heatmap written 13 months ago by Sathish • 50 • updated 13 months ago by Rashedul Islam • 290
2
votes
1
answer
1.0k
views
1
answer
Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 13 months ago by galozs • 20 • updated 13 months ago by Macspider • 2.7k
<prev • 143 results • page 1 of 5 • next >
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