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<prev • 147 results • page 1 of 5 • next >
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Converting FPKM values to raw read counts
R fpkm rna-seq written 2 days ago by Mohamed Omar • 0
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213
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 8 weeks ago by Joel Wallenius • 10 • updated 22 days ago by Biostar ♦♦ 20
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120
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 23 days ago by jordan.mandel • 0 • updated 23 days ago by h.mon ♦ 25k
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96
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how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 5 weeks ago by doaamohamedsamir • 0 • updated 5 weeks ago by Bastien Hervé ♦ 4.2k
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3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 8 months ago by Biologist • 150 • updated 8 weeks ago by Ahmed Alhendi • 10
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How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 24 months ago by manish20072013 • 0 • updated 9 weeks ago by Ahmed Alhendi • 10
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11 follow
2
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.3 years ago by Fill • 70 • updated 12 weeks ago by Ahmed Alhendi • 10
7
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1
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184
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1
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 4 months ago by elmahy2005 • 40 • updated 4 months ago by h.mon ♦ 25k
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3
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3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 19 months ago by Silvia • 10 • updated 4 months ago by Charles Warden ♦ 6.8k
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3
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1.5k
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5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 2.1 years ago by alexahes • 10 • updated 4 months ago by Charles Warden ♦ 6.8k
6
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2
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583
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 5 months ago by Susmita Mandal • 40 • updated 5 months ago by johnsonnathant • 80
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235
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which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 5 months ago by yff • 0
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2
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634
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5 follow
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 6 months ago by carolgalah • 0 • updated 6 months ago by dz2353 • 70
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1
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430
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1
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 6 months ago by hxlei613 • 80 • updated 6 months ago by Devon Ryan ♦ 90k
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2.8k
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.8 years ago by vinumanikandan • 0 • updated 7 months ago by Biostar ♦♦ 20
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2
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5 follow
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TPKM vs FPKM
fpkm rna-seq written 7 months ago by nanoide • 30 • updated 7 months ago by ATpoint ♦ 17k
3
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1
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292
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1
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Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 8 months ago by Maryam • 40
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1
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474
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1
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 8 months ago by hxlei613 • 80 • updated 8 months ago by Kevin Blighe ♦ 43k
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1
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624
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1
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 8 months ago by AnneC • 0 • updated 8 months ago by Kevin Blighe ♦ 43k
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.7 years ago by ando.kelli • 40 • updated 8 months ago by egtabilin • 0
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2.8k
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2
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RNA seq results as fpkm
fpkm rna-seq sequencing written 3.3 years ago by charbel.feghaly • 10 • updated 9 months ago by RamRS ♦ 21k
2
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1
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694
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1
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 9 months ago by Vasu • 330 • updated 9 months ago by Adrian Pelin • 2.3k
2
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2
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1.1k
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 3.1 years ago by nazaninhoseinkhan • 360 • updated 9 months ago by Biostar ♦♦ 20
1
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 24 months ago by s.herrera706 • 0 • updated 10 months ago by Biostar ♦♦ 20
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1
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497
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Why survival plots look different with same data?
survivalanalysis tcga fpkm survival rna-seq written 10 months ago by Biologist • 150 • updated 10 months ago by Friederike ♦ 4.2k
8
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943
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 10 months ago by nanoide • 30
10
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1
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633
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 12 months ago by shenwei1376 • 0 • updated 12 months ago by Charles Warden ♦ 6.8k
4
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1
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522
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1
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Question about Fpkm sum
fpkm rna-seq written 13 months ago by lyrae • 0 • updated 12 months ago by h.mon ♦ 25k
4
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1
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907
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1
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data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 13 months ago by modarzi • 70 • updated 13 months ago by Kevin Blighe ♦ 43k
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1
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2.3k
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1
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Calculating fpkm from raw counts
R fpkm rna-seq written 13 months ago by vinayjrao • 120
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