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<prev • 154 results • page 1 of 6 • next >
2
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Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.4 years ago by Nathan S. Watson-Haigh • 200 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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117
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1
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how to analyze/integrate methylation "beta value" and RNA-seq "FPKM" data from only one cell line
beta value omics fpkm integration rna-seq written 5 weeks ago by maria2019 • 100
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196
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Calculating FPKM for large number of samples mapped to co-assembly
assembly metagenomics next-gen fpkm sequencing written 4 months ago by arla_21 • 0
46
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3
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93k
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30 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.4 years ago by biorepine • 1.5k • updated 8 months ago by Renesh • 1.9k
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456
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RSEM Error - rsem-calculate-expression
rsem-calculate-expression fpkm rsem rna-seq written 8 months ago by anoo • 0 • updated 8 months ago by h.mon ♦ 30k
6
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3
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360
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3
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Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 8 months ago by tpaboh • 0
7
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1
answer
450
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1
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Cox proportional hazards regression use log2 fpkm
fpkm cox written 9 months ago by MatthewP • 680 • updated 9 months ago by dsull • 1.5k
2
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2
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621
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2
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Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 10 months ago by hkarakurt • 100 • updated 10 months ago by shoujun.gu • 310
2
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0
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414
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In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 10 months ago by Rajinder Gupta • 10
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456
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How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 11 months ago by LuisNagano • 40 • updated 11 months ago by ATpoint ♦ 36k
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1
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1.1k
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1
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 22 months ago by hxlei613 • 90 • updated 12 months ago by Biostar ♦♦ 20
11
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2
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1.7k
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8 follow
2
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 12 months ago by zhaoliang0302 • 0 • updated 12 months ago by kristoffer.vittingseerup • 3.4k
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FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 5.7 years ago by Ron • 1000 • updated 13 months ago by Biostar ♦♦ 20
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1.8k
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1
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 4.4 years ago by lidia.mateo • 0 • updated 13 months ago by Biostar ♦♦ 20
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0
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392
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Converting FPKM values to raw read counts
R fpkm rna-seq written 14 months ago by Mohamed Omar • 10
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1.4k
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0
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 16 months ago by Joel Wallenius • 70 • updated 14 months ago by Biostar ♦♦ 20
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1
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625
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 14 months ago by jordan.mandel • 0 • updated 14 months ago by h.mon ♦ 30k
0
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1
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307
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1
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how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 15 months ago by doaamohamedsamir • 0 • updated 15 months ago by Bastien Hervé ♦ 4.7k
2
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3
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3.6k
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5 follow
3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 22 months ago by Biologist • 190 • updated 16 months ago by Ahmed Alhendi • 50
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2
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5.1k
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2
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How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 3.1 years ago by manish20072013 • 10 • updated 16 months ago by Ahmed Alhendi • 50
9
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2
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11k
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11 follow
2
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 3.5 years ago by Fill • 70 • updated 16 months ago by Ahmed Alhendi • 50
7
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1
answer
376
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1
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 18 months ago by elmahy2005 • 80 • updated 18 months ago by h.mon ♦ 30k
7
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3
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2.8k
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3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 2.8 years ago by Silvia • 10 • updated 18 months ago by Charles Warden ♦ 7.8k
7
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3
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2.9k
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6 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 3.3 years ago by alexahes • 10 • updated 18 months ago by Charles Warden ♦ 7.8k
6
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2
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2.3k
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9 follow
2
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 19 months ago by Susmita Mandal • 60 • updated 19 months ago by johnsonnathant • 80
0
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555
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which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 19 months ago by yff • 0
11
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2
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2.4k
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5 follow
2
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 20 months ago by carolgalah • 0 • updated 20 months ago by dz2353 • 110
2
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1
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972
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1
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 20 months ago by hxlei613 • 90 • updated 20 months ago by Devon Ryan ♦ 96k
0
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1
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3.1k
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.9 years ago by bassanio • 20 • updated 21 months ago by Biostar ♦♦ 20
10
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2
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1.3k
views
5 follow
2
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TPKM vs FPKM
fpkm rna-seq written 21 months ago by nanoide • 50 • updated 21 months ago by ATpoint ♦ 36k
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