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<prev • 157 results • page 1 of 6 • next >
5
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1
answer
1.9k
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1
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Rna-Seq Expression For 3' Transcripts
fpkm rna written 8.9 years ago by Sander Timmer • 700 • updated 3 hours ago by Biostar ♦♦ 20
1
vote
1
answer
54
views
1
answer
htseq-count without GTF?
htseq count fpkm htseq-count gtf written 7 days ago by blur • 140 • updated 7 days ago by ATpoint ♦ 40k
0
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0
answers
104
views
0
answers
Generating barplot of fpkm value
R fpkm rna-seq python written 13 days ago by sidrah.maryam • 20
65
votes
3
answers
20k
views
59 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 7.0 years ago by Irsan • 7.2k • updated 14 days ago by RamRS ♦ 30k
6
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2
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2.8k
views
2
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Clustering of genes using FPKM
R fpkm bioconductor clustering rna-seq written 5.9 years ago by Ron • 1.0k • updated 6 weeks ago by Hamid Ghaedi • 580
1
vote
1
answer
710
views
1
answer
RSEM Error - rsem-calculate-expression
rsem-calculate-expression fpkm rsem rna-seq written 11 months ago by anoo • 0 • updated 8 weeks ago by svp • 240
0
votes
0
answers
144
views
0
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how to calculate p-value of Cuffdiff result?
p-value fpkm cuffdiff rna-seq written 11 weeks ago by dahun73 • 10 • updated 10 weeks ago by Biostar ♦♦ 20
2
votes
0
answers
3.1k
views
0
answers
Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.6 years ago by Nathan S. Watson-Haigh • 200 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
167
views
1
answer
how to analyze/integrate methylation "beta value" and RNA-seq "FPKM" data from only one cell line
beta value omics fpkm integration rna-seq written 4 months ago by maria2019 • 100
0
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0
answers
234
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0
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Calculating FPKM for large number of samples mapped to co-assembly
assembly metagenomics next-gen fpkm sequencing written 7 months ago by arla_21 • 0
46
votes
3
answers
94k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.6 years ago by biorepine • 1.5k • updated 11 months ago by Renesh • 1.9k
6
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3
answers
466
views
3
answers
Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 11 months ago by tpaboh • 0
7
votes
1
answer
566
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1
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Cox proportional hazards regression use log2 fpkm
fpkm cox written 12 months ago by MatthewP • 780 • updated 12 months ago by dsull • 1.6k
2
votes
2
answers
783
views
2
answers
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 13 months ago by hkarakurt • 100 • updated 13 months ago by shoujun.gu • 310
2
votes
0
answers
538
views
0
answers
In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 13 months ago by Rajinder Gupta • 10
2
votes
0
answers
596
views
0
answers
How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 13 months ago by LuisNagano • 70 • updated 13 months ago by ATpoint ♦ 40k
0
votes
1
answer
1.3k
views
1
answer
Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 2.0 years ago by hxlei613 • 90 • updated 14 months ago by Biostar ♦♦ 20
11
votes
2
answers
2.2k
views
8 follow
2
answers
How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 15 months ago by zhaoliang0302 • 10 • updated 15 months ago by kristoffer.vittingseerup • 3.4k
0
votes
1
answer
1.8k
views
1
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FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 5.9 years ago by Ron • 1.0k • updated 16 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.9k
views
1
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 4.6 years ago by lidia.mateo • 0 • updated 16 months ago by Biostar ♦♦ 20
1
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0
answers
513
views
0
answers
Converting FPKM values to raw read counts
R fpkm rna-seq written 16 months ago by Mohamed Omar • 10
0
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0
answers
1.7k
views
0
answers
Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 18 months ago by Joel Wallenius • 70 • updated 17 months ago by Biostar ♦♦ 20
0
votes
1
answer
764
views
1
answer
Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 17 months ago by jordan.mandel • 0 • updated 17 months ago by h.mon ♦ 31k
0
votes
1
answer
342
views
1
answer
how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 18 months ago by doaamohamedsamir • 0 • updated 18 months ago by Bastien Hervé ♦ 4.8k
2
votes
3
answers
4.2k
views
5 follow
3
answers
How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 2.1 years ago by Biologist • 190 • updated 18 months ago by Ahmed Alhendi • 50
2
votes
2
answers
5.7k
views
2
answers
How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 3.4 years ago by manish20072013 • 10 • updated 19 months ago by Ahmed Alhendi • 50
9
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2
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11k
views
11 follow
2
answers
Calculating FPKM after htseq-count
htseq fpkm rna-seq written 3.7 years ago by Fill • 70 • updated 19 months ago by Ahmed Alhendi • 50
7
votes
1
answer
396
views
1
answer
Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 20 months ago by elmahy2005 • 90 • updated 20 months ago by h.mon ♦ 31k
7
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3
answers
3.0k
views
3
answers
FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 3.0 years ago by Silvia • 10 • updated 20 months ago by Charles Warden ♦ 7.9k
7
votes
3
answers
3.2k
views
6 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 3.5 years ago by alexahes • 10 • updated 21 months ago by Charles Warden ♦ 7.9k
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