Showing: fpkmreset
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 15 months ago by Silvia10 • updated 9 days ago by Charles Warden6.1k
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Converting TPM to FPKM
fpkm tpm rna-seq written 21 months ago by alexahes10 • updated 21 days ago by Charles Warden6.1k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 5 weeks ago by Susmita Mandal20 • updated 5 weeks ago by johnsonnathant80
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 9 weeks ago by carolgalah0 • updated 9 weeks ago by dz235350
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 11 weeks ago by hxlei61380 • updated 11 weeks ago by Devon Ryan88k
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.5 years ago by vinumanikandan0 • updated 3 months ago by Biostar ♦♦ 20
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5 follow
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TPKM vs FPKM
fpkm rna-seq written 4 months ago by nanoide10 • updated 4 months ago by ATpoint13k
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 4 months ago by hxlei61380 • updated 4 months ago by Kevin Blighe37k
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 4 months ago by AnneC0 • updated 4 months ago by Kevin Blighe37k
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 4 months ago by Biologist130 • updated 4 months ago by h.mon23k
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.4 years ago by ando.kelli40 • updated 4 months ago by egtabilin0
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RNA seq results as fpkm
fpkm rna-seq sequencing written 3.0 years ago by charbel.feghaly10 • updated 5 months ago by RamRS20k
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 5 months ago by Vasu300 • updated 5 months ago by Adrian Pelin2.2k
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 2.8 years ago by nazaninhoseinkhan360 • updated 5 months ago by Biostar ♦♦ 20
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 20 months ago by s.herrera7060 • updated 6 months ago by Biostar ♦♦ 20
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Why survival plots look different with same data?
survivalanalysis tcga fpkm survival rna-seq written 6 months ago by Biologist130 • updated 6 months ago by Friederike2.6k
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 8 months ago by shenwei13760 • updated 8 months ago by Charles Warden6.1k
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Question about Fpkm sum
fpkm rna-seq written 9 months ago by lyrae0 • updated 9 months ago by h.mon23k
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data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 9 months ago by modarzi60 • updated 9 months ago by Kevin Blighe37k
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Calculating fpkm from raw counts
R fpkm rna-seq written 9 months ago by vinayjrao110
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Formula to calculate FPKM
fpkm rna-seq written 11 months ago by vinayjrao110 • updated 11 months ago by Rahul Sharma560
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ChIP-seq output to FPKM
fpkm chip-seq written 12 months ago by Clara0
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48 follow
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 5.3 years ago by Irsan6.8k • updated 12 months ago by lhdcsu10
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RNA-seq heatmap output order
fpkm cluster 3.0 rna-seq heatmap written 13 months ago by Sathish50 • updated 13 months ago by Rashedul Islam290
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 13 months ago by galozs20 • updated 13 months ago by Macspider2.7k
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