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2
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131
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 9 days ago by hxlei613 • 80 • updated 9 days ago by Devon Ryan ♦ 86k
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1
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2.6k
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.3 years ago by vinumanikandan • 0 • updated 4 weeks ago by Biostar ♦♦ 20
10
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2
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288
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5 follow
2
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TPKM vs FPKM
fpkm rna-seq written 7 weeks ago by nanoide • 10 • updated 7 weeks ago by ATpoint ♦ 10k
3
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1
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130
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1
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Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 8 weeks ago by Maryam • 20
0
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1
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145
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1
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 8 weeks ago by hxlei613 • 80 • updated 8 weeks ago by Kevin Blighe ♦ 33k
0
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1
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170
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1
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 9 weeks ago by AnneC • 0 • updated 9 weeks ago by Kevin Blighe ♦ 33k
0
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2
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284
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2
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 10 weeks ago by Biologist • 110 • updated 10 weeks ago by h.mon ♦ 21k
1
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2
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1.2k
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.2 years ago by ando.kelli • 40 • updated 11 weeks ago by egtabilin • 0
5
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2
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2.4k
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2
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RNA seq results as fpkm
fpkm rna-seq sequencing written 2.8 years ago by charbel.feghaly • 10 • updated 12 weeks ago by RamRS ♦ 19k
2
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1
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289
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1
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 3 months ago by Bioinfo • 270 • updated 3 months ago by Adrian Pelin • 2.2k
2
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2
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960
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2
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 2.6 years ago by nazaninhoseinkhan • 340 • updated 3 months ago by Biostar ♦♦ 20
1
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0
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739
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0
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 17 months ago by s.herrera706 • 0 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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250
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1
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Why survival plots look different with same data?
survivalanalysis tcga fpkm survival rna-seq written 4 months ago by Biologist • 110 • updated 4 months ago by Friederike • 2.3k
8
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0
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424
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0
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 4 months ago by nanoide • 10
10
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1
answer
387
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1
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 6 months ago by shenwei1376 • 0 • updated 5 months ago by Charles Warden ♦ 5.7k
4
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1
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300
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1
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Question about Fpkm sum
fpkm rna-seq written 6 months ago by lyrae • 0 • updated 6 months ago by h.mon ♦ 21k
4
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1
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445
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1
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data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 7 months ago by modarzi • 60 • updated 7 months ago by Kevin Blighe ♦ 33k
2
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1
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1.1k
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1
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Calculating fpkm from raw counts
R fpkm rna-seq written 7 months ago by vinayjrao • 110
0
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1
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373
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1
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RNA-seq of two non-model species: differential expression and FPKM
fpkm compatative transcriptomics rna-seq written 8 months ago by maxnest • 10 • updated 8 months ago by c.chakraborty • 110
1
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1
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1.3k
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1
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Formula to calculate FPKM
fpkm rna-seq written 9 months ago by vinayjrao • 110 • updated 9 months ago by Rahul Sharma • 560
0
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0
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390
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0
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ChIP-seq output to FPKM
fpkm chip-seq written 9 months ago by Clara • 0
50
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3
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16k
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48 follow
3
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 5.2 years ago by Irsan • 6.8k • updated 10 months ago by lhdcsu • 10
1
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1
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562
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1
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RNA-seq heatmap output order
fpkm cluster 3.0 rna-seq heatmap written 10 months ago by Sathish • 50 • updated 10 months ago by Rashedul Islam • 290
2
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1
answer
889
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1
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 11 months ago by galozs • 20 • updated 10 months ago by Macspider • 2.6k
1
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2
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1.7k
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How to plot PCA with fpkm values
pca plot rnaseq fpkm written 21 months ago by raya.girish • 20 • updated 11 months ago by RamRS ♦ 19k
10
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0
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6.3k
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5 follow
0
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Cufflinks : Analysis Comparison With And Without A Gtf Reference File
fpkm cufflinks rna written 7.5 years ago by Hélène • 90 • updated 12 months ago by Biostar ♦♦ 20
4
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2
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1.0k
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2
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 13 months ago by Silvia • 0 • updated 13 months ago by igor ♦ 7.1k
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1
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1.3k
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1
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 2.8 years ago by lidia.mateo • 0 • updated 13 months ago by Zhao fei • 0
0
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1
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502
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1
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Is it possible to analyze together rna seq outputs from cufflinks and rsem?
fpkm cufflinks rna-seq rsem written 13 months ago by SandraGarcia • 0 • updated 13 months ago by Kevin Blighe ♦ 33k
0
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0
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893
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0
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Differential Expressed Genes by FPKM expression matrix
R fpkm rna-seq deg written 14 months ago by morteza.kouhsar • 0
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