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<prev • 150 results • page 1 of 5 • next >
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In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 3 days ago by Rajinder Gupta • 10
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132
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How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 13 days ago by LuisNagano • 10 • updated 13 days ago by ATpoint ♦ 23k
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647
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1
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 11 months ago by hxlei613 • 80 • updated 6 weeks ago by Biostar ♦♦ 20
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240
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8 follow
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 9 weeks ago by zhaoliang0302 • 0 • updated 9 weeks ago by kristoffer.vittingseerup • 2.3k
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FPKM for Normal vs Tumor
fpkm cufflinks rna-seq written 4.8 years ago by Ron • 970 • updated 11 weeks ago by Biostar ♦♦ 20
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comparisson of RNA-seq FPKMs across samples
fpkm rna-seq written 3.5 years ago by lidia.mateo • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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212
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Converting FPKM values to raw read counts
R fpkm rna-seq written 3 months ago by Mohamed Omar • 10
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425
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 5 months ago by Joel Wallenius • 70 • updated 3 months ago by Biostar ♦♦ 20
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225
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 3 months ago by jordan.mandel • 0 • updated 3 months ago by h.mon ♦ 27k
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1
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how to convert UniqueReadCounts.txt to FPKM
fpkm rna-seq written 4 months ago by doaamohamedsamir • 0 • updated 4 months ago by Bastien Hervé ♦ 4.4k
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3
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5 follow
3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 11 months ago by Biologist • 150 • updated 5 months ago by Ahmed Alhendi • 30
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How to perform FPKM on raw reads in R
R fpkm rna-seq sequencing written 2.2 years ago by manish20072013 • 0 • updated 5 months ago by Ahmed Alhendi • 30
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11 follow
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.6 years ago by Fill • 70 • updated 6 months ago by Ahmed Alhendi • 30
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240
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Is possible to recreate RNASeq count dataset from a dataset normalized with FPKM ?
fpkm rna-seq written 7 months ago by elmahy2005 • 40 • updated 7 months ago by h.mon ♦ 27k
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3
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 22 months ago by Silvia • 10 • updated 7 months ago by Charles Warden ♦ 7.2k
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3
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1.8k
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5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 2.4 years ago by alexahes • 10 • updated 7 months ago by Charles Warden ♦ 7.2k
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951
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 8 months ago by Susmita Mandal • 50 • updated 8 months ago by johnsonnathant • 80
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which file and column outputted from Cuffdiff corresponds to each sample FPKM standard deviation?
cuffdiff fpkm cufflinks sd rna-seq written 8 months ago by yff • 0
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5 follow
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 9 months ago by carolgalah • 0 • updated 9 months ago by dz2353 • 80
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 9 months ago by hxlei613 • 80 • updated 9 months ago by Devon Ryan ♦ 91k
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.1 years ago by vinumanikandan • 0 • updated 10 months ago by Biostar ♦♦ 20
10
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2
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753
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5 follow
2
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TPKM vs FPKM
fpkm rna-seq written 11 months ago by nanoide • 30 • updated 11 months ago by ATpoint ♦ 23k
3
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1
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363
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1
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Which normalization is good for gene expression classification and clustering
classification fpkm deseq2 normalization written 11 months ago by Maryam • 40
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 11 months ago by AnneC • 0 • updated 11 months ago by Kevin Blighe ♦ 48k
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.9 years ago by ando.kelli • 40 • updated 12 months ago by egtabilin • 0
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RNA seq results as fpkm
fpkm rna-seq sequencing written 3.6 years ago by charbel.feghaly • 10 • updated 12 months ago by RamRS ♦ 24k
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885
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 12 months ago by Vasu • 370 • updated 12 months ago by Adrian Pelin • 2.3k
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 3.4 years ago by nazaninhoseinkhan • 370 • updated 12 months ago by Biostar ♦♦ 20
1
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 2.2 years ago by s_herrera • 0 • updated 13 months ago by Biostar ♦♦ 20
0
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Why survival plots look different with same data?
survivalanalysis tcga fpkm survival rna-seq written 13 months ago by Biologist • 150 • updated 13 months ago by Friederike ♦ 5.1k
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